Wall clock time and date at job start Fri Apr 10 2020 17:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34780 * 116.99662 * 2 1 4 4 O 1.21543 * 120.00590 * 0.02562 * 3 2 1 5 5 C 1.47150 * 119.99791 * 180.02562 * 3 2 1 6 6 C 1.40054 * 120.23559 * 90.02037 * 5 3 2 7 7 F 1.35100 * 120.07508 * 0.02562 * 6 5 3 8 8 C 1.38068 * 119.85091 * 179.97438 * 6 5 3 9 9 C 1.38492 * 120.32666 * 0.02562 * 8 6 5 10 10 C 1.38028 * 120.48630 * 359.74136 * 9 8 6 11 11 C 1.38881 * 120.13633 * 0.51340 * 10 9 8 12 12 N 1.38848 * 120.16521 * 179.76721 * 11 10 9 13 13 C 1.46493 * 119.99796 * 359.72490 * 12 11 10 14 14 C 1.50706 * 109.47128 * 179.97438 * 13 12 11 15 15 O 1.21297 * 119.99667 * 359.97438 * 14 13 12 16 16 N 1.34773 * 120.00081 * 179.72554 * 14 13 12 17 17 C 1.37095 * 119.99878 * 180.02562 * 16 14 13 18 18 H 1.08004 * 120.00160 * 359.97438 * 17 16 14 19 19 C 1.38950 * 120.00380 * 179.97438 * 17 16 14 20 20 N 1.31412 * 119.99401 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00554 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46783 * 60.00161 * 21 19 17 23 23 H 1.48496 * 109.47291 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.46865 * 300.00343 * 21 19 17 25 25 H 1.08999 * 109.47359 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47432 * 300.00242 * 1 2 3 27 27 H 1.09000 * 109.46978 * 59.99935 * 1 2 3 28 28 H 1.07995 * 119.83688 * 179.97438 * 8 6 5 29 29 H 1.08008 * 119.75814 * 180.02562 * 9 8 6 30 30 H 1.08001 * 119.93459 * 180.28430 * 10 9 8 31 31 H 0.97005 * 119.99674 * 179.72173 * 12 11 10 32 32 H 1.09001 * 109.47786 * 60.00148 * 13 12 11 33 33 H 1.08998 * 109.47558 * 300.00011 * 13 12 11 34 34 H 0.96998 * 120.00525 * 359.97438 * 16 14 13 35 35 H 0.97004 * 120.00112 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2203 0.0005 5 6 3.5333 1.2780 -0.0006 6 6 4.2371 1.3156 -1.2109 7 9 3.5683 1.2817 -2.3842 8 6 5.6158 1.3884 -1.2021 9 6 6.3066 1.4239 -0.0023 10 6 5.6266 1.3924 1.1984 11 6 4.2401 1.3139 1.2127 12 7 3.5557 1.2773 2.4202 13 6 4.2966 1.3154 3.6834 14 6 3.3271 1.2645 4.8362 15 8 2.1346 1.2030 4.6233 16 7 3.7855 1.2824 6.1034 17 6 2.9035 1.2356 7.1520 18 1 1.8415 1.1848 6.9625 19 6 3.3760 1.2534 8.4586 20 7 4.6683 1.3147 8.6891 21 14 2.1743 1.1904 9.8874 22 1 1.3793 -0.0615 9.8105 23 1 2.9256 1.2224 11.1679 24 1 1.2627 2.3606 9.8195 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 6.1583 1.4170 -2.1355 29 1 7.3852 1.4813 -0.0062 30 1 6.1741 1.4252 2.1288 31 1 2.5870 1.2265 2.4273 32 1 4.8762 2.2370 3.7372 33 1 4.9695 0.4596 3.7361 34 1 4.7393 1.3276 6.2737 35 1 4.9982 1.3276 9.6013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175128647.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:32 Heat of formation + Delta-G solvation = -159.370191 kcal Electronic energy + Delta-G solvation = -23156.615965 eV Core-core repulsion = 19261.373833 eV Total energy + Delta-G solvation = -3895.242133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.10516 -41.80303 -40.58198 -39.74695 -37.62518 -36.60570 -35.86771 -33.42561 -32.54578 -30.82426 -28.95131 -28.31354 -26.32967 -25.25187 -22.98285 -22.29409 -21.25527 -20.09967 -19.54319 -18.89947 -18.42889 -18.06614 -17.59675 -17.00479 -16.74956 -16.62992 -16.39971 -16.24790 -15.99020 -15.92971 -15.32764 -14.71943 -14.55641 -14.46716 -14.11672 -13.95146 -13.55982 -13.40218 -13.14155 -12.91949 -12.81582 -12.64392 -12.49653 -12.14951 -11.97731 -11.79969 -11.60524 -11.24509 -10.60294 -10.11945 -9.95759 -8.68049 -8.53665 -6.03215 -0.07971 0.37867 0.76077 1.35717 1.41264 1.50973 1.61831 1.89054 1.99417 2.29690 2.57854 3.06484 3.13780 3.15811 3.59726 3.90822 3.96918 4.08512 4.15570 4.19690 4.33450 4.35377 4.41591 4.43839 4.55691 4.78777 5.02266 5.08223 5.16729 5.35561 5.40942 5.67967 5.86744 6.06639 6.31332 6.40961 6.47951 7.02547 7.41638 7.95127 8.62584 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021586 B = 0.003582 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.832292 B = 7815.934417 C = 8927.330174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.357 6.357 3 C 0.519 3.481 4 O -0.526 6.526 5 C -0.266 4.266 6 C 0.164 3.836 7 F -0.143 7.143 8 C -0.206 4.206 9 C -0.001 4.001 10 C -0.208 4.208 11 C 0.275 3.725 12 N -0.726 5.726 13 C 0.122 3.878 14 C 0.423 3.577 15 O -0.637 6.637 16 N -0.553 5.553 17 C -0.342 4.342 18 H 0.078 0.922 19 C -0.003 4.003 20 N -0.910 5.910 21 Si 0.991 3.009 22 H -0.272 1.272 23 H -0.268 1.268 24 H -0.274 1.274 25 H 0.137 0.863 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.170 0.830 29 H 0.186 0.814 30 H 0.163 0.837 31 H 0.396 0.604 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.403 0.597 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.870 -2.432 -16.440 17.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.273 6.273 3 C 0.363 3.637 4 O -0.415 6.415 5 C -0.273 4.273 6 C 0.145 3.855 7 F -0.121 7.121 8 C -0.226 4.226 9 C -0.019 4.019 10 C -0.230 4.230 11 C 0.166 3.834 12 N -0.352 5.352 13 C -0.005 4.005 14 C 0.211 3.789 15 O -0.525 6.525 16 N -0.189 5.189 17 C -0.471 4.471 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.550 5.550 21 Si 0.815 3.185 22 H -0.197 1.197 23 H -0.192 1.192 24 H -0.199 1.199 25 H 0.155 0.845 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.187 0.813 29 H 0.203 0.797 30 H 0.181 0.819 31 H 0.232 0.768 32 H 0.131 0.869 33 H 0.135 0.865 34 H 0.238 0.762 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.051 -2.182 -16.192 17.423 hybrid contribution -1.479 0.103 0.725 1.651 sum 4.572 -2.079 -15.466 16.261 Atomic orbital electron populations 1.23639 0.74514 1.06137 1.02574 1.86686 1.25285 1.32129 1.83221 1.21333 0.89633 0.81583 0.71105 1.90841 1.67690 1.37119 1.45876 1.18479 0.88766 1.25737 0.94335 1.17523 0.91050 0.98961 0.78014 1.91482 1.81470 1.93545 1.45643 1.21181 0.89635 1.09687 1.02102 1.21412 1.02187 0.89271 0.89071 1.21128 0.89611 1.10495 1.01792 1.17637 0.92614 0.90415 0.82709 1.44549 1.09344 1.78569 1.02702 1.21095 0.93173 1.05498 0.80689 1.20677 0.89548 0.83658 0.85043 1.90505 1.18895 1.58159 1.84951 1.41761 1.10010 1.63115 1.04034 1.19622 0.91185 1.50697 0.85598 0.90359 1.26002 0.98322 0.95668 1.00482 1.69635 1.13219 1.48806 1.23295 0.85016 0.77756 0.78915 0.76850 1.19718 1.19181 1.19904 0.84474 0.92634 0.91084 0.81284 0.79699 0.81944 0.76846 0.86893 0.86470 0.76229 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.61 10.57 113.37 1.20 1.80 16 2 O -0.36 -11.53 10.58 -56.91 -0.60 -12.13 16 3 C 0.52 18.51 5.78 70.16 0.41 18.91 16 4 O -0.53 -21.47 16.90 19.70 0.33 -21.13 16 5 C -0.27 -8.22 5.77 -19.96 -0.12 -8.33 16 6 C 0.16 4.25 7.29 22.67 0.17 4.41 16 7 F -0.14 -3.95 16.83 44.97 0.76 -3.19 16 8 C -0.21 -3.51 10.00 22.29 0.22 -3.29 16 9 C 0.00 -0.01 10.02 22.28 0.22 0.21 16 10 C -0.21 -4.01 9.29 22.37 0.21 -3.80 16 11 C 0.28 7.79 6.66 38.73 0.26 8.05 16 12 N -0.73 -24.34 5.61 -342.53 -1.92 -26.26 16 13 C 0.12 3.81 5.38 85.64 0.46 4.27 16 14 C 0.42 19.09 7.85 87.66 0.69 19.78 16 15 O -0.64 -34.46 15.24 -3.08 -0.05 -34.51 16 16 N -0.55 -26.60 5.29 -306.98 -1.62 -28.22 16 17 C -0.34 -18.62 9.68 84.04 0.81 -17.80 16 18 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 19 C 0.00 -0.17 5.50 84.93 0.47 0.30 16 20 N -0.91 -46.35 13.05 21.66 0.28 -46.06 16 21 Si 0.99 41.27 29.55 68.60 2.03 43.29 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 26 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 27 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 29 H 0.19 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.16 2.35 6.71 -2.91 -0.02 2.33 16 31 H 0.40 15.89 6.29 -92.70 -0.58 15.30 16 32 H 0.11 2.89 7.93 -2.39 -0.02 2.87 16 33 H 0.12 2.91 7.95 -2.39 -0.02 2.90 16 34 H 0.40 17.80 7.90 -92.71 -0.73 17.07 16 35 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 Total: -1.00 -72.86 320.93 4.05 -68.80 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: -0.15 Total: 34.87 kcal Atomic # 6 Polarization: 19.54 SS G_CDS: 4.99 Total: 24.53 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -3.26 Total: -100.54 kcal Atomic # 8 Polarization: -67.45 SS G_CDS: -0.32 Total: -67.77 kcal Atomic # 9 Polarization: -3.95 SS G_CDS: 0.76 Total: -3.19 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Total: -72.86 4.05 -68.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175128647.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.565 kcal (2) G-P(sol) polarization free energy of solvation -72.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds