Wall clock time and date at job start Fri Apr 10 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47307 * 275.28350 * 3 2 1 5 5 H 1.48499 * 109.46918 * 35.28176 * 3 2 1 6 6 H 1.48500 * 109.47058 * 155.28202 * 3 2 1 7 7 C 1.38818 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99510 * 37.07536 * 7 2 1 9 9 N 1.36929 * 120.00276 * 217.35632 * 7 2 1 10 10 C 1.46972 * 120.59073 * 26.23339 * 9 7 2 11 11 C 1.53815 * 108.39473 * 124.76046 * 10 9 7 12 12 N 1.46973 * 108.57877 * 49.63763 * 11 10 9 13 13 C 1.34774 * 120.59110 * 124.62153 * 12 11 10 14 14 O 1.21286 * 119.99766 * 180.02562 * 13 12 11 15 15 C 1.50704 * 120.00284 * 0.02618 * 13 12 11 16 16 O 1.42897 * 109.46897 * 179.97438 * 15 13 12 17 17 C 1.42905 * 113.99595 * 179.97438 * 16 15 13 18 18 C 1.53007 * 109.46811 * 179.97438 * 17 16 15 19 19 F 1.39898 * 109.47286 * 59.99826 * 18 17 16 20 20 F 1.39903 * 109.46638 * 180.02562 * 18 17 16 21 21 F 1.39903 * 109.47054 * 299.99727 * 18 17 16 22 22 C 1.46957 * 118.81406 * 304.64856 * 12 11 10 23 23 C 1.46960 * 120.59772 * 206.52209 * 9 7 2 24 24 H 0.97000 * 120.00046 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.61298 * 244.54233 * 10 9 7 26 26 H 1.08995 * 109.61261 * 5.05756 * 10 9 7 27 27 H 1.08994 * 109.74454 * 289.85281 * 11 10 9 28 28 H 1.09004 * 109.67411 * 169.38330 * 11 10 9 29 29 H 1.08997 * 109.46855 * 299.99436 * 15 13 12 30 30 H 1.08994 * 109.46932 * 59.99795 * 15 13 12 31 31 H 1.08994 * 109.47270 * 299.99662 * 17 16 15 32 32 H 1.09002 * 109.47074 * 60.00002 * 17 16 15 33 33 H 1.09004 * 109.60829 * 295.48016 * 22 12 11 34 34 H 1.08993 * 109.75563 * 175.05475 * 22 12 11 35 35 H 1.09001 * 109.60662 * 354.94142 * 23 9 7 36 36 H 1.08998 * 109.61756 * 115.28412 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3861 2.1108 -1.3941 5 1 1.5079 2.6178 0.8087 6 1 3.5991 1.4104 0.5854 7 6 2.0102 -1.2022 -0.0005 8 1 1.6339 -2.0427 -0.5648 9 7 3.1689 -1.3242 0.7189 10 6 3.4071 -0.4842 1.9012 11 6 3.7059 -1.4036 3.0976 12 7 4.7362 -2.3725 2.6978 13 6 5.8770 -2.4918 3.4054 14 8 6.7202 -3.2946 3.0655 15 6 6.1049 -1.6278 4.6189 16 8 7.3759 -1.9389 5.1932 17 6 7.6920 -1.1706 6.3560 18 6 9.0670 -1.5859 6.8833 19 9 10.0329 -1.3584 5.8973 20 9 9.3761 -0.8342 8.0220 21 9 9.0487 -2.9454 7.2134 22 6 4.5005 -3.2084 1.5123 23 6 4.1992 -2.2929 0.3191 24 1 -0.4850 0.8400 -0.0004 25 1 4.2586 0.1714 1.7186 26 1 2.5201 0.1137 2.1099 27 1 2.7995 -1.9334 3.3902 28 1 4.0688 -0.8087 3.9359 29 1 6.0852 -0.5780 4.3263 30 1 5.3199 -1.8157 5.3513 31 1 7.7058 -0.1115 6.0990 32 1 6.9397 -1.3483 7.1244 33 1 3.6505 -3.8667 1.6921 34 1 5.3872 -3.8056 1.3004 35 1 3.8352 -2.8898 -0.5171 36 1 5.1047 -1.7631 0.0236 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000217710703.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:46 Heat of formation + Delta-G solvation = -210.922748 kcal Electronic energy + Delta-G solvation = -24384.069032 eV Core-core repulsion = 20068.194977 eV Total energy + Delta-G solvation = -4315.874055 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.10786 -48.65688 -48.60375 -41.21625 -39.19379 -38.28412 -35.65098 -33.62927 -32.43157 -31.30307 -29.38481 -27.94503 -25.16278 -24.72430 -24.25682 -22.41976 -20.38990 -19.65044 -19.64088 -19.23536 -18.44740 -17.97400 -17.46139 -17.28136 -16.94720 -16.40086 -16.03331 -15.92617 -15.49233 -15.43851 -15.27074 -15.04129 -15.03157 -14.78302 -14.75492 -14.72916 -14.21311 -14.11077 -13.73819 -13.46809 -13.28481 -12.76687 -12.58373 -12.47523 -12.24315 -12.10737 -11.87718 -11.39991 -11.04040 -10.81876 -10.65793 -9.89134 -8.88074 -8.22096 -5.38159 1.28343 1.37325 1.51061 1.52757 1.56317 1.85036 2.44342 2.47639 2.84456 2.95593 3.00861 3.35755 3.38999 3.61171 4.02598 4.10499 4.12256 4.13820 4.21235 4.24429 4.34384 4.44582 4.59128 4.64285 4.77784 4.89017 5.02197 5.19933 5.41006 5.67386 5.86542 6.12012 6.40765 6.91241 7.10181 7.63408 8.05362 8.95915 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.027553 B = 0.003369 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.970653 B = 8309.896942 C = 8839.944108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.009 4.009 3 Si 0.900 3.100 4 H -0.308 1.308 5 H -0.291 1.291 6 H -0.233 1.233 7 C -0.268 4.268 8 H 0.048 0.952 9 N -0.613 5.613 10 C 0.121 3.879 11 C 0.094 3.906 12 N -0.600 5.600 13 C 0.507 3.493 14 O -0.577 6.577 15 C 0.050 3.950 16 O -0.386 6.386 17 C 0.016 3.984 18 C 0.457 3.543 19 F -0.191 7.191 20 F -0.173 7.173 21 F -0.190 7.190 22 C 0.106 3.894 23 C 0.132 3.868 24 H 0.264 0.736 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.075 0.925 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.126 0.874 31 H 0.130 0.870 32 H 0.133 0.867 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.696 0.970 17.040 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.207 4.207 3 Si 0.727 3.273 4 H -0.237 1.237 5 H -0.217 1.217 6 H -0.156 1.156 7 C -0.397 4.397 8 H 0.066 0.934 9 N -0.338 5.338 10 C -0.004 4.004 11 C -0.030 4.030 12 N -0.333 5.333 13 C 0.296 3.704 14 O -0.457 6.457 15 C -0.028 4.028 16 O -0.305 6.305 17 C -0.062 4.062 18 C 0.403 3.597 19 F -0.172 7.172 20 F -0.154 7.154 21 F -0.171 7.171 22 C -0.018 4.018 23 C 0.007 3.993 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.084 0.916 27 H 0.094 0.906 28 H 0.143 0.857 29 H 0.137 0.863 30 H 0.144 0.856 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.087 0.913 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 14.141 0.466 16.798 21.963 hybrid contribution 0.000 0.825 -0.602 1.022 sum 14.141 1.292 16.196 21.540 Atomic orbital electron populations 1.70199 1.07824 1.27641 1.51229 1.25693 0.95187 1.00334 0.99533 0.86584 0.81837 0.81726 0.77184 1.23715 1.21750 1.15627 1.18687 0.97425 0.95908 1.27668 0.93381 1.44420 1.17664 1.43626 1.28047 1.21914 0.99333 0.92785 0.86410 1.22591 0.91225 0.91079 0.98089 1.48029 1.17983 1.39192 1.28127 1.20845 0.80827 0.83726 0.85012 1.90696 1.44811 1.39393 1.70805 1.22502 0.86450 0.99926 0.93940 1.87956 1.37048 1.62562 1.42944 1.23840 0.91901 0.99302 0.91137 1.20536 0.88874 0.74719 0.75560 1.93199 1.67352 1.94233 1.62424 1.93216 1.94102 1.76202 1.51923 1.93200 1.96935 1.34251 1.92728 1.21981 1.01415 0.93193 0.85224 1.21407 0.90996 0.91452 0.95485 0.92739 0.94171 0.91600 0.90648 0.85680 0.86279 0.85650 0.85248 0.84957 0.91323 0.89500 0.91014 0.95316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.92 13.97 21.65 0.30 -53.61 16 2 C -0.01 -0.50 4.80 84.86 0.41 -0.09 16 3 Si 0.90 40.79 26.47 68.60 1.82 42.61 16 4 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.23 -9.46 4.99 99.48 0.50 -8.96 16 7 C -0.27 -14.08 9.84 84.04 0.83 -13.25 16 8 H 0.05 2.79 8.05 -2.91 -0.02 2.77 16 9 N -0.61 -26.25 2.71 -697.32 -1.89 -28.14 16 10 C 0.12 4.27 4.58 86.56 0.40 4.67 16 11 C 0.09 2.39 6.52 86.56 0.56 2.95 16 12 N -0.60 -17.26 2.95 -817.13 -2.41 -19.66 16 13 C 0.51 14.39 7.77 87.66 0.68 15.07 16 14 O -0.58 -21.83 15.91 15.99 0.25 -21.58 16 15 C 0.05 0.85 4.76 71.24 0.34 1.19 16 16 O -0.39 -8.13 9.76 -129.94 -1.27 -9.40 16 17 C 0.02 0.18 5.90 71.98 0.42 0.61 16 18 C 0.46 7.86 3.32 71.98 0.24 8.10 16 19 F -0.19 -4.22 17.26 44.97 0.78 -3.44 16 20 F -0.17 -2.62 17.32 44.97 0.78 -1.85 16 21 F -0.19 -4.11 17.26 44.97 0.78 -3.33 16 22 C 0.11 3.41 6.59 86.42 0.57 3.98 16 23 C 0.13 4.87 6.67 86.42 0.58 5.45 16 24 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 25 H 0.04 1.38 6.78 -2.39 -0.02 1.36 16 26 H 0.07 2.52 5.60 -2.39 -0.01 2.50 16 27 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.13 1.87 5.91 -2.39 -0.01 1.85 16 29 H 0.12 1.31 7.72 -2.39 -0.02 1.29 16 30 H 0.13 1.19 7.91 -2.39 -0.02 1.17 16 31 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.09 2.81 7.00 -2.39 -0.02 2.79 16 35 H 0.07 2.64 7.93 -2.39 -0.02 2.63 16 36 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -73.45 309.48 5.07 -68.39 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 0.90 Total: 1.36 kcal Atomic # 6 Polarization: 23.64 SS G_CDS: 5.03 Total: 28.67 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -3.99 Total: -101.41 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: -1.01 Total: -30.98 kcal Atomic # 9 Polarization: -10.95 SS G_CDS: 2.33 Total: -8.62 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.82 Total: 42.61 kcal Total: -73.45 5.07 -68.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000217710703.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.538 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds