Wall clock time and date at job start Fri Apr 10 2020 17:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00132 * 2 1 4 4 C 1.38085 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.39835 * 119.84169 * 180.02562 * 4 3 2 6 6 C 1.47436 * 120.07567 * 179.97438 * 5 4 3 7 7 O 1.21508 * 120.00537 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99556 * 180.02562 * 6 5 4 9 9 C 1.33310 * 119.99785 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99873 * 359.97438 * 9 8 6 11 11 C 1.46788 * 120.00144 * 179.97438 * 9 8 6 12 12 N 1.29314 * 120.00112 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99735 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46922 * 90.00455 * 13 11 9 15 15 H 1.48499 * 109.46795 * 209.99861 * 13 11 9 16 16 H 1.48496 * 109.47264 * 329.99900 * 13 11 9 17 17 C 1.39812 * 119.84728 * 0.02562 * 5 4 3 18 18 C 1.37746 * 119.99492 * 359.97395 * 17 5 4 19 19 N 1.48011 * 119.92225 * 180.30520 * 18 17 5 20 20 O 1.31697 * 120.00202 * 359.72465 * 19 18 17 21 21 O 1.31703 * 119.99901 * 179.72476 * 19 18 17 22 22 C 1.38885 * 120.15248 * 0.02562 * 18 17 5 23 23 O 1.35772 * 119.91919 * 180.02562 * 22 18 17 24 24 C 1.42901 * 117.00355 * 90.00147 * 23 22 18 25 25 H 1.09008 * 109.47168 * 300.00283 * 1 2 3 26 26 H 1.08997 * 109.47047 * 60.00293 * 1 2 3 27 27 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.08298 * 359.97438 * 4 3 2 29 29 H 0.97002 * 120.00820 * 359.97438 * 8 6 5 30 30 H 0.97002 * 120.00151 * 179.97438 * 12 11 9 31 31 H 1.07996 * 120.00644 * 180.02562 * 17 5 4 32 32 H 1.08994 * 109.47332 * 180.02562 * 24 23 22 33 33 H 1.09003 * 109.46869 * 300.00376 * 24 23 22 34 34 H 1.09005 * 109.46755 * 59.99794 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2943 2.3698 0.0005 5 6 1.9326 3.6140 0.0000 6 6 1.1346 4.8538 0.0000 7 8 -0.0791 4.7952 0.0000 8 7 1.7514 6.0521 -0.0011 9 6 1.0299 7.1731 -0.0016 10 1 -0.0488 7.1210 -0.0016 11 6 1.7017 8.4783 -0.0022 12 7 1.0018 9.5656 -0.0022 13 14 3.5675 8.5684 -0.0014 14 1 4.0624 8.5914 -1.4013 15 1 4.0031 9.8038 0.6980 16 1 4.1201 7.3817 0.6996 17 6 3.3292 3.6796 -0.0016 18 6 4.0730 2.5203 -0.0022 19 7 5.5514 2.5917 0.0030 20 8 6.1542 3.7626 0.0025 21 8 6.2641 1.4841 0.0079 22 6 3.4390 1.2846 -0.0016 23 8 4.1769 0.1449 -0.0016 24 6 4.5299 -0.3995 1.2716 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2157 2.3148 0.0005 29 1 2.7203 6.0990 -0.0014 30 1 1.4457 10.4281 -0.0022 31 1 3.8247 4.6392 -0.0016 32 1 5.1175 -1.3063 1.1288 33 1 5.1180 0.3302 1.8283 34 1 3.6238 -0.6371 1.8290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265975360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:51 Heat of formation + Delta-G solvation = -38.699089 kcal Electronic energy + Delta-G solvation = -23899.321784 eV Core-core repulsion = 19996.939554 eV Total energy + Delta-G solvation = -3902.382231 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.02830 -39.00288 -38.88279 -37.97025 -36.55707 -34.48426 -34.19135 -32.65765 -31.32618 -30.52423 -27.73994 -27.33923 -26.18633 -25.17934 -23.06970 -22.04254 -20.17326 -19.58856 -18.50654 -18.14325 -17.66213 -16.93077 -16.47446 -16.42539 -16.00227 -15.71536 -15.40371 -15.18646 -14.80222 -14.30127 -14.01603 -13.57283 -13.45875 -13.06394 -12.75306 -12.55778 -12.30972 -11.92637 -11.60033 -11.51506 -11.30405 -11.18807 -11.03171 -10.98902 -10.54494 -10.48593 -10.14094 -10.07657 -9.30309 -8.91107 -8.82812 -8.50745 -7.10208 -4.01506 -0.62370 0.57392 1.15114 1.19080 2.64894 2.78804 2.85181 2.87049 2.94292 3.48760 3.58025 3.90658 4.10224 4.61520 4.67073 4.75255 4.81797 4.84844 4.95565 5.04404 5.14401 5.22651 5.28648 5.36824 5.52713 5.60343 5.78372 5.80774 6.11199 6.18968 6.67717 6.81122 6.91490 7.29538 7.65789 7.86421 8.44438 8.87366 9.56347 9.95217 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.005469 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.105832 B = 5118.171608 C = 6773.729513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.300 6.300 3 C 0.117 3.883 4 C -0.120 4.120 5 C -0.046 4.046 6 C 0.419 3.581 7 O -0.593 6.593 8 N -0.514 5.514 9 C -0.308 4.308 10 H 0.133 0.867 11 C 0.053 3.947 12 N -0.794 5.794 13 Si 0.879 3.121 14 H -0.256 1.256 15 H -0.263 1.263 16 H -0.254 1.254 17 C -0.086 4.086 18 C 0.017 3.983 19 N -0.013 5.013 20 O -0.186 6.186 21 O -0.147 6.147 22 C 0.102 3.898 23 O -0.305 6.305 24 C 0.043 3.957 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.105 0.895 28 H 0.161 0.839 29 H 0.372 0.628 30 H 0.295 0.705 31 H 0.152 0.848 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.663 -13.737 1.904 14.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.213 6.213 3 C 0.070 3.930 4 C -0.141 4.141 5 C -0.052 4.052 6 C 0.213 3.787 7 O -0.482 6.482 8 N -0.143 5.143 9 C -0.438 4.438 10 H 0.151 0.849 11 C -0.165 4.165 12 N -0.424 5.424 13 Si 0.702 3.298 14 H -0.180 1.180 15 H -0.187 1.187 16 H -0.179 1.179 17 C -0.107 4.107 18 C -0.071 4.071 19 N 0.466 4.534 20 O -0.374 6.374 21 O -0.347 6.347 22 C 0.054 3.946 23 O -0.220 6.220 24 C -0.051 4.051 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.123 0.877 28 H 0.178 0.822 29 H 0.207 0.793 30 H 0.107 0.893 31 H 0.170 0.830 32 H 0.118 0.882 33 H 0.063 0.937 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.322 -13.680 1.756 13.986 hybrid contribution 1.581 0.620 0.200 1.710 sum 3.904 -13.060 1.956 13.770 Atomic orbital electron populations 1.23236 0.77420 1.04374 1.02392 1.86139 1.21924 1.24808 1.88429 1.18784 0.90022 0.85666 0.98534 1.21544 1.02019 0.89739 1.00839 1.20022 0.90828 0.95649 0.98735 1.16772 0.87619 0.81693 0.92623 1.90618 1.12423 1.85311 1.59833 1.41323 1.08404 1.06491 1.58125 1.20760 0.95076 0.81101 1.46897 0.84948 1.26889 1.00008 0.94415 0.95204 1.68594 1.39160 0.99203 1.35444 0.86626 0.82152 0.80385 0.80658 1.18022 1.18689 1.17864 1.21057 0.93478 0.97299 0.98881 1.20211 0.76887 0.95205 1.14758 1.50207 1.04121 1.02719 0.96323 1.96284 1.73945 1.10731 1.56427 1.96260 1.65437 1.19335 1.53653 1.17325 0.87166 0.84959 1.05173 1.86096 1.69760 1.36588 1.29579 1.22999 0.99475 0.98809 0.83820 0.91952 0.91828 0.87709 0.82160 0.79334 0.89276 0.83017 0.88150 0.93662 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.88 10.28 -34.39 -0.35 -4.23 16 3 C 0.12 1.74 6.69 -39.19 -0.26 1.47 16 4 C -0.12 -1.90 8.58 -39.04 -0.33 -2.24 16 5 C -0.05 -0.84 5.88 -104.97 -0.62 -1.46 16 6 C 0.42 9.31 7.69 -12.51 -0.10 9.22 16 7 O -0.59 -15.17 15.85 5.36 0.08 -15.08 16 8 N -0.51 -11.49 4.97 -10.69 -0.05 -11.55 16 9 C -0.31 -7.76 10.43 -13.46 -0.14 -7.90 16 10 H 0.13 3.80 7.31 -52.49 -0.38 3.41 16 11 C 0.05 1.26 5.69 -15.16 -0.09 1.17 16 12 N -0.79 -19.49 13.88 56.00 0.78 -18.71 16 13 Si 0.88 16.91 27.86 -169.99 -4.74 12.17 16 14 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 15 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 16 H -0.25 -4.63 6.62 56.52 0.37 -4.25 16 17 C -0.09 -1.46 9.06 -39.17 -0.35 -1.82 16 18 C 0.02 0.28 6.89 -79.89 -0.55 -0.27 16 19 N -0.01 -0.23 4.98 33.99 0.17 -0.06 16 20 O -0.19 -3.47 19.14 -31.57 -0.60 -4.08 16 21 O -0.15 -2.61 16.55 -39.25 -0.65 -3.26 16 22 C 0.10 1.64 5.73 -38.89 -0.22 1.41 16 23 O -0.30 -4.68 8.51 -47.82 -0.41 -5.09 16 24 C 0.04 0.51 10.36 101.05 1.05 1.55 16 25 H 0.06 0.54 7.66 -51.92 -0.40 0.14 16 26 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 27 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.16 2.40 5.87 -52.49 -0.31 2.09 16 29 H 0.37 7.38 3.97 -40.82 -0.16 7.22 16 30 H 0.29 6.46 8.26 -40.82 -0.34 6.12 16 31 H 0.15 2.50 5.89 -52.49 -0.31 2.19 16 32 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.55 7.43 -51.93 -0.39 0.17 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 308.13 15.07 4.64 4.64 Total: -1.00 -29.27 308.13 -4.53 -33.80 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -2.77 Total: 9.12 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.63 Total: 2.33 kcal Atomic # 7 Polarization: -31.21 SS G_CDS: 0.89 Total: -30.32 kcal Atomic # 8 Polarization: -29.81 SS G_CDS: -1.93 Total: -31.74 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -4.74 Total: 12.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.27 -4.53 -33.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265975360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.903 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds