Wall clock time and date at job start Fri Apr 10 2020 17:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36000 * 117.00132 * 2 1 4 4 C 1.38085 * 119.99684 * 0.02562 * 3 2 1 5 5 C 1.39835 * 119.84169 * 180.02562 * 4 3 2 6 6 C 1.47436 * 120.07567 * 179.97438 * 5 4 3 7 7 O 1.21508 * 120.00537 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99556 * 180.02562 * 6 5 4 9 9 C 1.33310 * 119.99785 * 179.97438 * 8 6 5 10 10 H 1.08002 * 119.99873 * 359.97438 * 9 8 6 11 11 C 1.46788 * 120.00144 * 179.97438 * 9 8 6 12 12 N 1.29314 * 120.00112 * 180.02562 * 11 9 8 13 13 Si 1.86800 * 119.99735 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.46922 * 90.00455 * 13 11 9 15 15 H 1.48499 * 109.46795 * 209.99861 * 13 11 9 16 16 H 1.48496 * 109.47264 * 329.99900 * 13 11 9 17 17 C 1.39812 * 119.84728 * 0.02562 * 5 4 3 18 18 C 1.37746 * 119.99492 * 359.97395 * 17 5 4 19 19 N 1.48011 * 119.92225 * 180.30520 * 18 17 5 20 20 O 1.31697 * 120.00202 * 359.72465 * 19 18 17 21 21 O 1.31703 * 119.99901 * 179.72476 * 19 18 17 22 22 C 1.38885 * 120.15248 * 0.02562 * 18 17 5 23 23 O 1.35772 * 119.91919 * 180.02562 * 22 18 17 24 24 C 1.42901 * 117.00355 * 90.00147 * 23 22 18 25 25 H 1.09008 * 109.47168 * 300.00283 * 1 2 3 26 26 H 1.08997 * 109.47047 * 60.00293 * 1 2 3 27 27 H 1.09002 * 109.47386 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.08298 * 359.97438 * 4 3 2 29 29 H 0.97002 * 120.00820 * 359.97438 * 8 6 5 30 30 H 0.97002 * 120.00151 * 179.97438 * 12 11 9 31 31 H 1.07996 * 120.00644 * 180.02562 * 17 5 4 32 32 H 1.08994 * 109.47332 * 180.02562 * 24 23 22 33 33 H 1.09003 * 109.46869 * 300.00376 * 24 23 22 34 34 H 1.09005 * 109.46755 * 59.99794 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2943 2.3698 0.0005 5 6 1.9326 3.6140 0.0000 6 6 1.1346 4.8538 0.0000 7 8 -0.0791 4.7952 0.0000 8 7 1.7514 6.0521 -0.0011 9 6 1.0299 7.1731 -0.0016 10 1 -0.0488 7.1210 -0.0016 11 6 1.7017 8.4783 -0.0022 12 7 1.0018 9.5656 -0.0022 13 14 3.5675 8.5684 -0.0014 14 1 4.0624 8.5914 -1.4013 15 1 4.0031 9.8038 0.6980 16 1 4.1201 7.3817 0.6996 17 6 3.3292 3.6796 -0.0016 18 6 4.0730 2.5203 -0.0022 19 7 5.5514 2.5917 0.0030 20 8 6.1542 3.7626 0.0025 21 8 6.2641 1.4841 0.0079 22 6 3.4390 1.2846 -0.0016 23 8 4.1769 0.1449 -0.0016 24 6 4.5299 -0.3995 1.2716 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.2157 2.3148 0.0005 29 1 2.7203 6.0990 -0.0014 30 1 1.4457 10.4281 -0.0022 31 1 3.8247 4.6392 -0.0016 32 1 5.1175 -1.3063 1.1288 33 1 5.1180 0.3302 1.8283 34 1 3.6238 -0.6371 1.8290 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265975360.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:51 Heat of formation + Delta-G solvation = -58.288710 kcal Electronic energy + Delta-G solvation = -23900.171254 eV Core-core repulsion = 19996.939554 eV Total energy + Delta-G solvation = -3903.231700 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.37945 -40.55726 -40.25852 -39.21222 -37.97286 -36.28020 -35.60886 -34.39061 -32.75155 -31.83215 -28.81576 -28.38468 -27.59067 -26.70127 -24.52245 -23.36538 -21.74868 -21.26476 -19.93656 -19.52801 -18.96087 -18.26842 -17.85138 -17.66864 -17.47746 -17.02124 -16.91607 -16.30301 -15.91841 -15.78743 -15.76573 -15.06633 -14.70451 -14.65100 -14.23302 -13.79410 -13.66459 -13.12098 -12.85472 -12.66308 -12.58651 -12.51725 -12.41541 -12.39747 -12.08403 -11.95902 -11.74075 -11.31188 -10.73708 -10.72514 -10.66589 -9.76664 -8.78669 -5.95422 -2.00938 -0.78833 -0.23576 -0.18123 1.17576 1.27111 1.35122 1.44110 1.82653 2.01955 2.15824 2.32449 2.50482 2.98738 3.21746 3.32568 3.47317 3.53926 3.60440 4.09787 4.20765 4.31390 4.34066 4.36624 4.38064 4.47788 4.65335 4.72367 4.77130 4.83387 5.05393 5.47775 5.73108 5.79928 6.10492 6.14290 6.68473 7.12608 7.78766 8.32838 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.016023 B = 0.005469 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.105832 B = 5118.171608 C = 6773.729513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.299 6.299 3 C 0.126 3.874 4 C -0.095 4.095 5 C -0.058 4.058 6 C 0.434 3.566 7 O -0.626 6.626 8 N -0.520 5.520 9 C -0.370 4.370 10 H 0.075 0.925 11 C 0.021 3.979 12 N -0.852 5.852 13 Si 0.941 3.059 14 H -0.248 1.248 15 H -0.254 1.254 16 H -0.237 1.237 17 C -0.072 4.072 18 C 0.003 3.997 19 N -0.013 5.013 20 O -0.211 6.211 21 O -0.131 6.131 22 C 0.134 3.866 23 O -0.318 6.318 24 C 0.037 3.963 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.138 0.862 28 H 0.172 0.828 29 H 0.385 0.615 30 H 0.301 0.699 31 H 0.158 0.842 32 H 0.129 0.871 33 H 0.041 0.959 34 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.727 -17.836 2.186 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.211 6.211 3 C 0.078 3.922 4 C -0.115 4.115 5 C -0.063 4.063 6 C 0.226 3.774 7 O -0.517 6.517 8 N -0.152 5.152 9 C -0.500 4.500 10 H 0.093 0.907 11 C -0.192 4.192 12 N -0.483 5.483 13 Si 0.759 3.241 14 H -0.172 1.172 15 H -0.177 1.177 16 H -0.161 1.161 17 C -0.093 4.093 18 C -0.084 4.084 19 N 0.465 4.535 20 O -0.393 6.393 21 O -0.336 6.336 22 C 0.086 3.914 23 O -0.234 6.234 24 C -0.056 4.056 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.156 0.844 28 H 0.190 0.810 29 H 0.221 0.779 30 H 0.113 0.887 31 H 0.175 0.825 32 H 0.147 0.853 33 H 0.060 0.940 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.398 -17.758 2.046 18.409 hybrid contribution 0.923 1.064 0.125 1.414 sum 5.321 -16.694 2.172 17.656 Atomic orbital electron populations 1.23639 0.75076 1.06905 1.02932 1.86182 1.24121 1.23106 1.87721 1.18644 0.89618 0.86184 0.97789 1.21738 1.02819 0.89208 0.97756 1.19652 0.91104 0.94537 1.01014 1.17429 0.87470 0.82842 0.89668 1.90586 1.14568 1.86459 1.60064 1.40962 1.08641 1.05554 1.60011 1.20081 0.92956 0.83168 1.53747 0.90714 1.27605 1.04676 0.93164 0.93779 1.68677 1.41303 0.99935 1.38394 0.85718 0.75932 0.81244 0.81196 1.17187 1.17720 1.16063 1.20993 0.92850 0.97939 0.97567 1.20227 0.76646 0.95487 1.16062 1.50252 1.04330 1.02671 0.96205 1.96302 1.74111 1.10770 1.58087 1.96245 1.65587 1.19273 1.52476 1.17593 0.87769 0.85094 1.00945 1.86060 1.69591 1.35907 1.31802 1.23305 1.00674 0.99526 0.82110 0.91202 0.91465 0.84367 0.81023 0.77877 0.88677 0.82474 0.85309 0.94033 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.30 -6.28 10.28 -79.54 -0.82 -7.10 16 3 C 0.13 3.21 6.69 22.53 0.15 3.36 16 4 C -0.09 -2.72 8.58 22.62 0.19 -2.52 16 5 C -0.06 -2.01 5.88 -20.09 -0.12 -2.13 16 6 C 0.43 19.63 7.69 86.67 0.67 20.30 16 7 O -0.63 -33.15 15.85 -3.74 -0.06 -33.21 16 8 N -0.52 -24.14 4.97 -306.03 -1.52 -25.66 16 9 C -0.37 -20.16 10.43 86.71 0.90 -19.26 16 10 H 0.07 4.79 7.31 -2.91 -0.02 4.77 16 11 C 0.02 1.05 5.69 87.30 0.50 1.55 16 12 N -0.85 -44.92 13.88 23.26 0.32 -44.60 16 13 Si 0.94 35.43 27.86 68.60 1.91 37.34 16 14 H -0.25 -8.94 7.11 99.48 0.71 -8.24 16 15 H -0.25 -9.06 7.11 99.48 0.71 -8.36 16 16 H -0.24 -8.11 6.62 99.48 0.66 -7.45 16 17 C -0.07 -2.31 9.06 22.53 0.20 -2.11 16 18 C 0.00 0.10 6.89 36.42 0.25 0.35 16 19 N -0.01 -0.43 4.98 -46.37 -0.23 -0.66 16 20 O -0.21 -7.45 19.14 3.52 0.07 -7.38 16 21 O -0.13 -4.17 16.55 10.85 0.18 -3.99 16 22 C 0.13 3.74 5.73 22.72 0.13 3.87 16 23 O -0.32 -8.28 8.51 -63.47 -0.54 -8.82 16 24 C 0.04 0.69 10.36 113.37 1.17 1.86 16 25 H 0.07 0.91 7.66 -2.38 -0.02 0.89 16 26 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 27 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.17 4.64 5.87 -2.91 -0.02 4.63 16 29 H 0.39 15.41 3.97 -92.71 -0.37 15.04 16 30 H 0.30 14.07 8.26 -92.71 -0.77 13.31 16 31 H 0.16 4.91 5.89 -2.91 -0.02 4.89 16 32 H 0.13 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.04 0.83 7.43 -2.39 -0.02 0.81 16 34 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 Total: -1.00 -67.88 308.13 5.25 -62.63 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.77 Total: 24.95 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.17 Total: 6.49 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -1.43 Total: -70.92 kcal Atomic # 8 Polarization: -59.32 SS G_CDS: -1.17 Total: -60.49 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 1.91 Total: 37.34 kcal Total: -67.88 5.25 -62.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265975360.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.341 kcal (2) G-P(sol) polarization free energy of solvation -67.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds