Wall clock time and date at job start Fri Apr 10 2020 17:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47456 * 16.25446 * 3 2 1 5 5 C 1.36932 * 120.00266 * 275.00537 * 4 3 2 6 6 H 1.08003 * 120.00364 * 187.00353 * 5 4 3 7 7 C 1.38816 * 119.99938 * 6.99916 * 5 4 3 8 8 N 1.31616 * 120.00234 * 24.74836 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 204.74919 * 7 5 4 10 10 H 1.48499 * 109.47298 * 59.99964 * 9 7 5 11 11 H 1.48494 * 109.46866 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47062 * 299.99846 * 9 7 5 13 13 S 1.65604 * 119.99873 * 94.99963 * 4 3 2 14 14 O 1.42096 * 106.40398 * 150.34062 * 13 4 3 15 15 O 1.42098 * 106.39986 * 17.41880 * 13 4 3 16 16 C 1.76207 * 107.21872 * 263.88179 * 13 4 3 17 17 C 1.38253 * 120.38644 * 269.72640 * 16 13 4 18 18 N 1.31846 * 120.88519 * 179.70594 * 17 16 13 19 19 C 1.31838 * 121.77846 * 0.57878 * 18 17 16 20 20 C 1.38703 * 120.68715 * 359.70523 * 19 18 17 21 21 O 1.35909 * 120.47737 * 180.02562 * 20 19 18 22 22 C 1.42903 * 116.99864 * 359.97438 * 21 20 19 23 23 C 1.38532 * 120.38870 * 89.99965 * 16 13 4 24 24 H 4.40646 * 5.51405 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46669 * 256.25397 * 3 2 1 26 26 H 1.08994 * 109.46875 * 136.25725 * 3 2 1 27 27 H 0.96990 * 120.00226 * 180.02562 * 8 7 5 28 28 H 1.08007 * 119.55773 * 359.97438 * 17 16 13 29 29 H 1.07999 * 119.66016 * 179.73265 * 19 18 17 30 30 H 1.08999 * 109.46549 * 299.99434 * 22 21 20 31 31 H 1.08996 * 109.47242 * 59.99434 * 22 21 20 32 32 H 1.09000 * 109.47029 * 179.97438 * 22 21 20 33 33 H 1.07994 * 120.81509 * 359.97438 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3251 -0.3866 5 6 3.2662 -2.3085 0.5572 6 1 3.7315 -3.2479 0.2972 7 6 2.8012 -2.0981 1.8481 8 7 1.8405 -1.2257 2.0675 9 14 3.5390 -3.0533 3.2739 10 1 4.9926 -2.7634 3.3645 11 1 2.8733 -2.6485 4.5380 12 1 3.3371 -4.5078 3.0524 13 16 3.5290 -1.6344 -1.9651 14 8 4.5518 -2.6205 -1.9375 15 8 3.6851 -0.3702 -2.5948 16 6 2.1261 -2.3934 -2.7138 17 6 1.9857 -3.7687 -2.7022 18 7 0.9371 -4.3466 -3.2544 19 6 -0.0100 -3.6464 -3.8467 20 6 0.0636 -2.2625 -3.9037 21 8 -0.9154 -1.5447 -4.5149 22 6 -2.0006 -2.2806 -5.0834 23 6 1.1538 -1.6194 -3.3258 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.2450 0.9982 26 1 3.0090 0.7432 -0.7105 27 1 1.5159 -1.0784 2.9696 28 1 2.7429 -4.3777 -2.2307 29 1 -0.8520 -4.1555 -4.2917 30 1 -1.6186 -2.9617 -5.8438 31 1 -2.5009 -2.8522 -4.3018 32 1 -2.7099 -1.5889 -5.5379 33 1 1.2396 -0.5432 -3.3533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281305622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:03 Heat of formation + Delta-G solvation = 6.545560 kcal Electronic energy + Delta-G solvation = -22107.634600 eV Core-core repulsion = 18649.967196 eV Total energy + Delta-G solvation = -3457.667404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.23807 -37.81698 -36.45207 -35.93081 -34.51507 -32.14470 -32.05742 -31.24232 -30.13619 -27.47661 -26.68784 -23.97712 -23.38966 -22.78375 -18.80388 -18.42626 -17.80405 -16.83753 -16.81152 -16.55440 -16.22857 -15.77201 -15.45883 -14.76377 -14.48732 -14.03464 -13.43735 -13.41851 -13.33304 -12.77728 -12.50045 -12.41378 -11.94987 -11.85298 -11.43960 -11.35963 -11.05341 -10.89189 -10.81764 -10.58727 -10.52935 -10.36869 -9.85135 -9.57794 -9.24896 -9.06136 -8.85836 -8.43338 -8.22711 -6.71880 -4.08280 1.10049 1.60015 1.64613 3.03495 3.08296 3.15163 3.29011 3.68411 3.91865 4.01495 4.14226 4.48180 4.57984 4.71251 4.85332 4.98790 5.04509 5.07063 5.34091 5.35773 5.43237 5.52836 5.58923 6.01538 6.20961 6.22882 6.43541 6.64596 6.70253 6.89940 7.04842 7.13918 7.37948 8.01621 8.18678 8.41116 8.83555 8.88340 10.16175 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.006333 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.384177 B = 4420.541093 C = 4633.841451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.110 4.110 3 C 0.233 3.767 4 N -0.785 5.785 5 C -0.233 4.233 6 H 0.125 0.875 7 C 0.028 3.972 8 N -0.807 5.807 9 Si 0.935 3.065 10 H -0.264 1.264 11 H -0.280 1.280 12 H -0.266 1.266 13 S 2.513 3.487 14 O -0.977 6.977 15 O -0.997 6.997 16 C -0.665 4.665 17 C 0.149 3.851 18 N -0.470 5.470 19 C 0.039 3.961 20 C 0.048 3.952 21 O -0.312 6.312 22 C 0.025 3.975 23 C -0.013 4.013 24 H 0.195 0.805 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.280 0.720 28 H 0.168 0.832 29 H 0.153 0.847 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.471 -0.406 -4.215 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.284 4.284 2 C -0.113 4.113 3 C 0.108 3.892 4 N -0.606 5.606 5 C -0.383 4.383 6 H 0.143 0.857 7 C -0.186 4.186 8 N -0.445 5.445 9 Si 0.759 3.241 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.191 1.191 13 S 2.610 3.390 14 O -0.966 6.966 15 O -0.986 6.986 16 C -0.742 4.742 17 C -0.010 4.010 18 N -0.180 5.180 19 C -0.119 4.119 20 C 0.000 4.000 21 O -0.225 6.225 22 C -0.070 4.070 23 C -0.041 4.041 24 H 0.212 0.788 25 H 0.132 0.868 26 H 0.103 0.897 27 H 0.091 0.909 28 H 0.185 0.815 29 H 0.170 0.830 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.905 -0.800 -4.876 6.963 hybrid contribution -1.306 -0.175 0.498 1.409 sum -6.211 -0.975 -4.378 7.661 Atomic orbital electron populations 1.24159 0.95266 1.02852 1.06163 1.23276 0.94472 0.97854 0.95719 1.18537 0.84069 0.84187 1.02396 1.55727 1.71031 1.14531 1.19330 1.20223 1.29738 1.00521 0.87813 0.85732 1.25721 0.94875 0.97844 1.00173 1.70222 1.19975 1.31082 1.23246 0.85831 0.79799 0.79778 0.78669 1.18893 1.20525 1.19117 1.13013 0.78739 0.73153 0.74099 1.93364 1.56243 1.60585 1.86428 1.93331 1.87352 1.41559 1.76347 1.33576 1.24615 1.05422 1.10594 1.22346 0.94093 0.91181 0.93394 1.67554 1.01778 1.40360 1.08300 1.22895 0.99048 0.89823 1.00129 1.20088 0.90678 0.92048 0.97142 1.86085 1.31372 1.35131 1.69911 1.23051 0.88258 0.97943 0.97746 1.20534 0.89764 1.00793 0.92987 0.78827 0.86761 0.89680 0.90905 0.81513 0.83001 0.92765 0.92651 0.88176 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.48 19.21 29.55 0.57 -4.91 16 2 C -0.11 -2.42 11.06 -37.12 -0.41 -2.83 16 3 C 0.23 5.03 5.45 -6.83 -0.04 4.99 16 4 N -0.79 -17.90 2.89 -62.78 -0.18 -18.08 16 5 C -0.23 -5.37 9.46 -15.06 -0.14 -5.51 16 6 H 0.13 2.80 7.36 -52.48 -0.39 2.42 16 7 C 0.03 0.62 4.94 -17.43 -0.09 0.54 16 8 N -0.81 -18.32 8.82 55.49 0.49 -17.83 16 9 Si 0.93 17.51 29.62 -169.99 -5.04 12.48 16 10 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 11 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 12 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 13 S 2.51 57.34 5.66 -107.50 -0.61 56.73 16 14 O -0.98 -23.85 16.25 -57.17 -0.93 -24.78 16 15 O -1.00 -23.85 15.81 -57.17 -0.90 -24.75 16 16 C -0.67 -14.29 5.99 -39.47 -0.24 -14.53 16 17 C 0.15 3.09 10.68 -17.54 -0.19 2.90 16 18 N -0.47 -9.22 10.36 -13.13 -0.14 -9.35 16 19 C 0.04 0.67 10.22 -17.38 -0.18 0.49 16 20 C 0.05 0.87 6.71 -39.07 -0.26 0.60 16 21 O -0.31 -4.90 10.51 -19.46 -0.20 -5.11 16 22 C 0.03 0.26 9.82 101.05 0.99 1.25 16 23 C -0.01 -0.27 9.60 -39.14 -0.38 -0.65 16 24 H 0.19 3.38 7.80 -54.10 -0.42 2.96 16 25 H 0.11 2.44 6.55 -51.93 -0.34 2.10 16 26 H 0.09 1.72 6.87 -51.93 -0.36 1.36 16 27 H 0.28 6.02 8.31 -40.82 -0.34 5.68 16 28 H 0.17 3.28 7.62 -52.48 -0.40 2.88 16 29 H 0.15 2.03 6.32 -52.49 -0.33 1.69 16 30 H 0.05 0.49 7.68 -51.93 -0.40 0.09 16 31 H 0.05 0.52 7.68 -51.93 -0.40 0.12 16 32 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.15 2.92 7.71 -52.49 -0.40 2.52 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -29.27 306.40 -6.24 -35.51 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -3.00 Total: 8.23 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -0.36 Total: -17.66 kcal Atomic # 7 Polarization: -45.44 SS G_CDS: 0.17 Total: -45.27 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -2.04 Total: -54.64 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.04 Total: 12.48 kcal Atomic # 16 Polarization: 57.34 SS G_CDS: -0.61 Total: 56.73 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.27 -6.24 -35.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281305622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.060 kcal (2) G-P(sol) polarization free energy of solvation -29.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds