Wall clock time and date at job start Fri Apr 10 2020 17:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47456 * 16.25446 * 3 2 1 5 5 C 1.36932 * 120.00266 * 275.00537 * 4 3 2 6 6 H 1.08003 * 120.00364 * 187.00353 * 5 4 3 7 7 C 1.38816 * 119.99938 * 6.99916 * 5 4 3 8 8 N 1.31616 * 120.00234 * 24.74836 * 7 5 4 9 9 Si 1.86802 * 119.99946 * 204.74919 * 7 5 4 10 10 H 1.48499 * 109.47298 * 59.99964 * 9 7 5 11 11 H 1.48494 * 109.46866 * 180.02562 * 9 7 5 12 12 H 1.48509 * 109.47062 * 299.99846 * 9 7 5 13 13 S 1.65604 * 119.99873 * 94.99963 * 4 3 2 14 14 O 1.42096 * 106.40398 * 150.34062 * 13 4 3 15 15 O 1.42098 * 106.39986 * 17.41880 * 13 4 3 16 16 C 1.76207 * 107.21872 * 263.88179 * 13 4 3 17 17 C 1.38253 * 120.38644 * 269.72640 * 16 13 4 18 18 N 1.31846 * 120.88519 * 179.70594 * 17 16 13 19 19 C 1.31838 * 121.77846 * 0.57878 * 18 17 16 20 20 C 1.38703 * 120.68715 * 359.70523 * 19 18 17 21 21 O 1.35909 * 120.47737 * 180.02562 * 20 19 18 22 22 C 1.42903 * 116.99864 * 359.97438 * 21 20 19 23 23 C 1.38532 * 120.38870 * 89.99965 * 16 13 4 24 24 H 4.40646 * 5.51405 * 180.02562 * 4 1 2 25 25 H 1.08999 * 109.46669 * 256.25397 * 3 2 1 26 26 H 1.08994 * 109.46875 * 136.25725 * 3 2 1 27 27 H 0.96990 * 120.00226 * 180.02562 * 8 7 5 28 28 H 1.08007 * 119.55773 * 359.97438 * 17 16 13 29 29 H 1.07999 * 119.66016 * 179.73265 * 19 18 17 30 30 H 1.08999 * 109.46549 * 299.99434 * 22 21 20 31 31 H 1.08996 * 109.47242 * 59.99434 * 22 21 20 32 32 H 1.09000 * 109.47029 * 179.97438 * 22 21 20 33 33 H 1.07994 * 120.81509 * 359.97438 * 23 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3251 -0.3866 5 6 3.2662 -2.3085 0.5572 6 1 3.7315 -3.2479 0.2972 7 6 2.8012 -2.0981 1.8481 8 7 1.8405 -1.2257 2.0675 9 14 3.5390 -3.0533 3.2739 10 1 4.9926 -2.7634 3.3645 11 1 2.8733 -2.6485 4.5380 12 1 3.3371 -4.5078 3.0524 13 16 3.5290 -1.6344 -1.9651 14 8 4.5518 -2.6205 -1.9375 15 8 3.6851 -0.3702 -2.5948 16 6 2.1261 -2.3934 -2.7138 17 6 1.9857 -3.7687 -2.7022 18 7 0.9371 -4.3466 -3.2544 19 6 -0.0100 -3.6464 -3.8467 20 6 0.0636 -2.2625 -3.9037 21 8 -0.9154 -1.5447 -4.5149 22 6 -2.0006 -2.2806 -5.0834 23 6 1.1538 -1.6194 -3.3258 24 1 -1.0498 -0.0004 -0.0003 25 1 3.0092 0.2450 0.9982 26 1 3.0090 0.7432 -0.7105 27 1 1.5159 -1.0784 2.9696 28 1 2.7429 -4.3777 -2.2307 29 1 -0.8520 -4.1555 -4.2917 30 1 -1.6186 -2.9617 -5.8438 31 1 -2.5009 -2.8522 -4.3018 32 1 -2.7099 -1.5889 -5.5379 33 1 1.2396 -0.5432 -3.3533 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281305622.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:02 Heat of formation + Delta-G solvation = -13.660349 kcal Electronic energy + Delta-G solvation = -22108.510794 eV Core-core repulsion = 18649.967196 eV Total energy + Delta-G solvation = -3458.543598 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.066 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.62468 -39.11530 -38.16112 -37.77878 -36.38126 -33.81951 -33.58440 -32.93568 -31.55397 -28.44593 -28.38824 -25.70194 -24.86971 -24.22634 -20.45568 -19.98937 -19.40254 -18.55488 -18.30555 -18.11713 -17.73385 -17.03353 -16.88664 -16.45373 -16.12190 -15.33380 -15.11510 -15.02274 -14.73894 -14.27764 -14.18364 -13.80718 -13.58844 -13.12432 -12.89183 -12.70722 -12.65365 -12.58539 -12.47936 -12.32895 -12.19463 -11.97032 -11.49825 -11.16722 -10.91024 -10.63668 -10.49437 -10.12682 -9.60966 -8.40712 -5.84891 -0.44157 -0.10163 0.11819 1.52725 1.58584 1.67245 2.01056 2.14663 2.32987 2.46964 2.49585 2.78696 2.88347 3.22276 3.37182 3.46622 3.75278 3.90645 3.94781 3.97850 4.33069 4.34351 4.41848 4.53231 4.69499 4.77290 4.87026 4.94642 5.20049 5.26352 5.37237 5.48282 6.13295 6.28523 6.67857 6.69051 7.10330 7.22770 8.47243 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.017361 B = 0.006333 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.384177 B = 4420.541093 C = 4633.841451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.141 4.141 3 C 0.232 3.768 4 N -0.791 5.791 5 C -0.257 4.257 6 H 0.122 0.878 7 C 0.001 3.999 8 N -0.823 5.823 9 Si 0.994 3.006 10 H -0.263 1.263 11 H -0.274 1.274 12 H -0.265 1.265 13 S 2.521 3.479 14 O -0.999 6.999 15 O -1.015 7.015 16 C -0.680 4.680 17 C 0.131 3.869 18 N -0.477 5.477 19 C 0.047 3.953 20 C 0.058 3.942 21 O -0.324 6.324 22 C 0.010 3.990 23 C -0.036 4.036 24 H 0.223 0.777 25 H 0.113 0.887 26 H 0.091 0.909 27 H 0.283 0.717 28 H 0.167 0.833 29 H 0.198 0.802 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.128 0.872 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -1.143 -4.387 8.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.144 4.144 3 C 0.108 3.892 4 N -0.612 5.612 5 C -0.407 4.407 6 H 0.140 0.860 7 C -0.211 4.211 8 N -0.460 5.460 9 Si 0.815 3.185 10 H -0.187 1.187 11 H -0.199 1.199 12 H -0.190 1.190 13 S 2.621 3.379 14 O -0.989 6.989 15 O -1.005 7.005 16 C -0.760 4.760 17 C -0.027 4.027 18 N -0.186 5.186 19 C -0.112 4.112 20 C 0.010 3.990 21 O -0.236 6.236 22 C -0.084 4.084 23 C -0.064 4.064 24 H 0.240 0.760 25 H 0.130 0.870 26 H 0.109 0.891 27 H 0.094 0.906 28 H 0.184 0.816 29 H 0.214 0.786 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -6.895 -1.512 -5.051 8.680 hybrid contribution -0.889 0.071 0.418 0.985 sum -7.783 -1.441 -4.633 9.172 Atomic orbital electron populations 1.24890 0.96130 1.01601 1.04968 1.23515 0.95013 0.99026 0.96855 1.18549 0.84448 0.83874 1.02370 1.55678 1.71570 1.14898 1.19032 1.20435 1.30863 1.00885 0.88524 0.86033 1.26415 0.94759 0.98464 1.01497 1.70292 1.20352 1.31539 1.23828 0.84962 0.79020 0.78509 0.75967 1.18720 1.19906 1.19009 1.12666 0.78614 0.72486 0.74107 1.93315 1.57637 1.61128 1.86860 1.93287 1.87802 1.42465 1.76898 1.33248 1.24673 1.05910 1.12148 1.22389 0.94987 0.90958 0.94358 1.67603 1.01904 1.40622 1.08521 1.23588 0.99243 0.89739 0.98600 1.20060 0.90479 0.92371 0.96096 1.86094 1.31855 1.36207 1.69464 1.23522 0.87142 0.99157 0.98535 1.20599 0.90941 1.00677 0.94136 0.75978 0.86967 0.89147 0.90566 0.81569 0.78568 0.90980 0.91284 0.85373 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -10.36 19.21 74.32 1.43 -8.93 16 2 C -0.14 -6.21 11.06 31.13 0.34 -5.87 16 3 C 0.23 10.23 5.45 84.57 0.46 10.69 16 4 N -0.79 -36.90 2.89 -352.52 -1.02 -37.92 16 5 C -0.26 -12.04 9.46 84.04 0.79 -11.25 16 6 H 0.12 5.62 7.36 -2.91 -0.02 5.60 16 7 C 0.00 0.06 4.94 84.86 0.42 0.48 16 8 N -0.82 -37.05 8.82 21.65 0.19 -36.86 16 9 Si 0.99 35.34 29.62 68.60 2.03 37.37 16 10 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 11 H -0.27 -9.43 7.11 99.48 0.71 -8.73 16 12 H -0.27 -9.36 7.11 99.48 0.71 -8.65 16 13 S 2.52 118.55 5.66 -56.49 -0.32 118.23 16 14 O -1.00 -50.41 16.25 -128.00 -2.08 -52.49 16 15 O -1.01 -50.08 15.81 -128.00 -2.02 -52.10 16 16 C -0.68 -29.68 5.99 22.34 0.13 -29.54 16 17 C 0.13 5.47 10.68 84.69 0.90 6.38 16 18 N -0.48 -18.02 10.36 -195.44 -2.02 -20.05 16 19 C 0.05 1.48 10.22 84.80 0.87 2.35 16 20 C 0.06 2.00 6.71 22.60 0.15 2.15 16 21 O -0.32 -9.27 10.51 -92.53 -0.97 -10.25 16 22 C 0.01 0.17 9.82 113.37 1.11 1.28 16 23 C -0.04 -1.47 9.60 22.56 0.22 -1.25 16 24 H 0.22 7.25 7.80 -4.43 -0.03 7.21 16 25 H 0.11 4.90 6.55 -2.39 -0.02 4.88 16 26 H 0.09 3.77 6.87 -2.39 -0.02 3.76 16 27 H 0.28 11.99 8.31 -92.72 -0.77 11.22 16 28 H 0.17 6.73 7.62 -2.91 -0.02 6.71 16 29 H 0.20 4.33 6.32 -2.91 -0.02 4.32 16 30 H 0.07 0.97 7.68 -2.39 -0.02 0.95 16 31 H 0.07 0.99 7.68 -2.39 -0.02 0.97 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 33 H 0.14 5.75 7.71 -2.91 -0.02 5.72 16 Total: -1.00 -62.50 306.40 1.76 -60.73 By element: Atomic # 1 Polarization: 25.70 SS G_CDS: 1.14 Total: 26.84 kcal Atomic # 6 Polarization: -40.34 SS G_CDS: 6.83 Total: -33.51 kcal Atomic # 7 Polarization: -91.98 SS G_CDS: -2.85 Total: -94.83 kcal Atomic # 8 Polarization: -109.76 SS G_CDS: -5.08 Total: -114.84 kcal Atomic # 14 Polarization: 35.34 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 16 Polarization: 118.55 SS G_CDS: -0.32 Total: 118.23 kcal Total: -62.50 1.76 -60.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281305622.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.073 kcal (2) G-P(sol) polarization free energy of solvation -62.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds