Wall clock time and date at job start Fri Apr 10 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65601 * 120.00215 * 2 1 4 4 O 1.42106 * 106.39791 * 312.07499 * 3 2 1 5 5 O 1.42101 * 106.40192 * 179.15216 * 3 2 1 6 6 C 1.76201 * 107.22103 * 65.61166 * 3 2 1 7 7 C 1.37945 * 119.71140 * 243.19968 * 6 3 2 8 8 C 1.38225 * 119.83053 * 179.97438 * 7 6 3 9 9 C 1.38001 * 119.71599 * 0.23833 * 8 7 6 10 10 C 1.38798 * 120.50416 * 359.96107 * 9 8 7 11 11 C 1.37656 * 119.86585 * 359.67548 * 10 9 8 12 12 C 1.50600 * 122.91246 * 180.71134 * 11 10 9 13 13 C 1.52784 * 110.81990 * 340.23314 * 12 11 10 14 14 N 1.47237 * 107.90115 * 47.43337 * 13 12 11 15 15 C 1.36936 * 121.35091 * 115.67217 * 14 13 12 16 16 H 1.08001 * 119.99488 * 336.28258 * 15 14 13 17 17 C 1.38806 * 120.00238 * 156.28143 * 15 14 13 18 18 N 1.31625 * 119.99856 * 344.19944 * 17 15 14 19 19 Si 1.86802 * 120.00188 * 164.19543 * 17 15 14 20 20 H 1.48503 * 109.47088 * 89.99855 * 19 17 15 21 21 H 1.48494 * 109.47318 * 210.00245 * 19 17 15 22 22 H 1.48505 * 109.46862 * 330.00210 * 19 17 15 23 23 C 1.46691 * 117.30117 * 295.64817 * 14 13 12 24 24 H 1.09003 * 109.46806 * 64.86113 * 1 2 3 25 25 H 1.08995 * 109.47332 * 184.86110 * 1 2 3 26 26 H 1.08998 * 109.47339 * 304.86754 * 1 2 3 27 27 H 0.96994 * 119.99889 * 179.97438 * 2 1 3 28 28 H 1.08003 * 120.08563 * 359.97438 * 7 6 3 29 29 H 1.07997 * 120.14542 * 180.25247 * 8 7 6 30 30 H 1.07999 * 119.74622 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.19498 * 219.90712 * 12 11 10 32 32 H 1.08995 * 109.20506 * 100.56896 * 12 11 10 33 33 H 1.09004 * 109.77772 * 167.03572 * 13 12 11 34 34 H 1.09002 * 109.77895 * 287.77709 * 13 12 11 35 35 H 0.97006 * 119.99529 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.43563 * 164.40375 * 23 14 13 37 37 H 1.08994 * 109.43973 * 284.28179 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7025 2.2383 -1.0119 5 8 3.6741 1.1000 0.0202 6 6 1.9521 2.2334 1.5328 7 6 1.2915 3.4443 1.5404 8 6 1.0222 4.0732 2.7415 9 6 1.4211 3.4867 3.9252 10 6 2.0895 2.2703 3.9186 11 6 2.3519 1.6388 2.7240 12 6 3.0578 0.3113 2.6379 13 6 3.8400 0.0280 3.9194 14 7 2.9529 0.3047 5.0615 15 6 2.5609 -0.6904 5.9166 16 1 2.5610 -1.7183 5.5851 17 6 2.1633 -0.3781 7.2093 18 7 2.4489 0.8014 7.7188 19 14 1.2228 -1.6317 8.2259 20 1 2.1820 -2.4700 8.9892 21 1 0.3208 -0.9261 9.1712 22 1 0.4180 -2.4958 7.3253 23 6 2.5064 1.6897 5.2466 24 1 -0.3633 0.4366 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 -0.3634 0.5875 0.8431 27 1 1.9499 -0.8400 0.0004 28 1 0.9854 3.8999 0.6102 29 1 0.5018 5.0195 2.7535 30 1 1.2114 3.9779 4.8639 31 1 3.7468 0.3258 1.7933 32 1 2.3210 -0.4774 2.4858 33 1 4.1508 -1.0166 3.9385 34 1 4.7164 0.6743 3.9671 35 1 2.1707 1.0198 8.6221 36 1 1.6600 1.7093 5.9330 37 1 3.3225 2.2816 5.6610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284372379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:13 Heat of formation + Delta-G solvation = -20.399701 kcal Electronic energy + Delta-G solvation = -22616.310546 eV Core-core repulsion = 19293.307802 eV Total energy + Delta-G solvation = -3323.002744 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49363 -37.24365 -35.92794 -35.77992 -35.04991 -32.93153 -31.75432 -30.26439 -28.60631 -26.05458 -25.65244 -23.36417 -22.57388 -22.26191 -19.55708 -19.03369 -17.71985 -17.08180 -16.88326 -16.17725 -15.54978 -15.11776 -14.87306 -14.52920 -14.30740 -13.89275 -13.67869 -13.28444 -13.03806 -12.86179 -12.68767 -12.31617 -12.18826 -12.01919 -11.84432 -11.66350 -11.45175 -11.30648 -11.04837 -10.92708 -10.77975 -10.44713 -10.18992 -9.94437 -9.88515 -9.59490 -8.94026 -8.67727 -8.03953 -6.89095 -5.91788 -3.31006 0.53112 1.14137 1.70719 3.07514 3.30568 3.37815 3.39366 3.69063 3.97198 4.38850 4.55738 4.97976 5.04932 5.09434 5.20295 5.35030 5.38630 5.38984 5.57513 5.61968 5.66018 5.77639 5.91123 5.95837 6.02005 6.24065 6.38760 6.44812 6.59326 6.66693 6.74578 6.87700 6.89612 7.08133 7.26286 7.46019 7.66896 8.25295 9.06534 9.68977 10.26504 11.18891 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.005345 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.052801 B = 5237.063264 C = 5689.824920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -1.120 6.120 3 S 2.702 3.298 4 O -0.969 6.969 5 O -0.959 6.959 6 C -0.687 4.687 7 C -0.040 4.040 8 C -0.151 4.151 9 C -0.065 4.065 10 C -0.098 4.098 11 C 0.040 3.960 12 C -0.158 4.158 13 C 0.148 3.852 14 N -0.594 5.594 15 C -0.249 4.249 16 H 0.072 0.928 17 C 0.000 4.000 18 N -0.909 5.909 19 Si 0.906 3.094 20 H -0.286 1.286 21 H -0.289 1.289 22 H -0.280 1.280 23 C 0.204 3.796 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.062 0.938 27 H 0.419 0.581 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.127 0.873 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.066 0.934 34 H 0.032 0.968 35 H 0.256 0.744 36 H 0.101 0.899 37 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.374 1.794 -12.782 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.879 5.879 3 S 2.793 3.207 4 O -0.959 6.959 5 O -0.950 6.950 6 C -0.775 4.775 7 C -0.060 4.060 8 C -0.170 4.170 9 C -0.084 4.084 10 C -0.101 4.101 11 C 0.038 3.962 12 C -0.196 4.196 13 C 0.021 3.979 14 N -0.316 5.316 15 C -0.378 4.378 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.554 5.554 19 Si 0.736 3.264 20 H -0.213 1.213 21 H -0.215 1.215 22 H -0.205 1.205 23 C 0.078 3.922 24 H 0.082 0.918 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.253 0.747 28 H 0.152 0.848 29 H 0.143 0.857 30 H 0.145 0.855 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.085 0.915 34 H 0.050 0.950 35 H 0.066 0.934 36 H 0.119 0.881 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.017 2.282 -13.269 14.051 hybrid contribution -0.749 -0.697 1.462 1.784 sum -4.766 1.585 -11.808 12.832 Atomic orbital electron populations 1.21436 0.78455 1.04063 1.01906 1.55253 1.16205 1.24318 1.92158 1.01562 0.72951 0.72493 0.73736 1.93530 1.78563 1.68428 1.55371 1.93543 1.31028 1.83231 1.87152 1.30566 1.17716 1.09948 1.19314 1.20687 0.93763 0.92600 0.98919 1.21085 1.02757 1.00582 0.92559 1.21483 0.94352 0.94277 0.98305 1.21171 0.96448 0.94429 0.98029 1.19200 0.91733 0.94512 0.90715 1.21855 1.00729 0.93361 1.03703 1.20816 0.91604 0.99553 0.85924 1.44049 1.53122 1.05086 1.29327 1.19181 1.38817 0.88496 0.91321 0.91071 1.25005 1.01335 0.97270 0.96174 1.69998 1.48236 1.21663 1.15479 0.86237 0.79748 0.80552 0.79904 1.21277 1.21505 1.20507 1.19826 0.99695 0.84553 0.88092 0.91776 0.90000 0.91933 0.74737 0.84808 0.85728 0.85505 0.88062 0.89871 0.91519 0.95017 0.93433 0.88123 0.93887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 11.13 59.85 0.67 1.50 16 2 N -1.12 -12.46 5.53 -16.64 -0.09 -12.55 16 3 S 2.70 39.28 5.01 -107.50 -0.54 38.74 16 4 O -0.97 -15.53 16.69 -57.17 -0.95 -16.48 16 5 O -0.96 -16.12 15.35 -57.17 -0.88 -16.99 16 6 C -0.69 -11.15 5.89 -39.40 -0.23 -11.38 16 7 C -0.04 -0.60 9.53 -39.69 -0.38 -0.98 16 8 C -0.15 -2.20 10.05 -39.67 -0.40 -2.60 16 9 C -0.07 -1.10 9.62 -39.46 -0.38 -1.48 16 10 C -0.10 -1.95 5.82 -104.57 -0.61 -2.56 16 11 C 0.04 0.74 5.76 -104.60 -0.60 0.14 16 12 C -0.16 -2.81 4.83 -28.04 -0.14 -2.95 16 13 C 0.15 3.05 6.51 -3.75 -0.02 3.03 16 14 N -0.59 -14.47 2.98 -173.93 -0.52 -14.99 16 15 C -0.25 -6.56 9.71 -15.06 -0.15 -6.71 16 16 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 17 C 0.00 0.01 5.00 -17.43 -0.09 -0.08 16 18 N -0.91 -25.29 11.04 55.49 0.61 -24.68 16 19 Si 0.91 20.96 29.58 -169.99 -5.03 15.93 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.20 4.75 4.86 -5.04 -0.02 4.73 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.42 3.82 8.96 -34.47 -0.31 3.51 16 28 H 0.13 1.75 7.31 -52.48 -0.38 1.36 16 29 H 0.12 1.42 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.93 8.05 -52.49 -0.42 1.50 16 31 H 0.10 1.70 5.02 -51.93 -0.26 1.44 16 32 H 0.08 1.37 7.89 -51.93 -0.41 0.96 16 33 H 0.07 1.30 7.96 -51.93 -0.41 0.88 16 34 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 36 H 0.10 2.56 6.28 -51.93 -0.33 2.23 16 37 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -32.31 312.65 -9.65 -41.96 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -4.61 Total: 3.70 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -2.35 Total: -19.35 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 0.00 Total: -52.21 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.83 Total: -33.48 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 39.28 SS G_CDS: -0.54 Total: 38.74 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.31 -9.65 -41.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284372379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.560 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds