Wall clock time and date at job start Fri Apr 10 2020 17:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 S 1.65601 * 120.00215 * 2 1 4 4 O 1.42106 * 106.39791 * 312.07499 * 3 2 1 5 5 O 1.42101 * 106.40192 * 179.15216 * 3 2 1 6 6 C 1.76201 * 107.22103 * 65.61166 * 3 2 1 7 7 C 1.37945 * 119.71140 * 243.19968 * 6 3 2 8 8 C 1.38225 * 119.83053 * 179.97438 * 7 6 3 9 9 C 1.38001 * 119.71599 * 0.23833 * 8 7 6 10 10 C 1.38798 * 120.50416 * 359.96107 * 9 8 7 11 11 C 1.37656 * 119.86585 * 359.67548 * 10 9 8 12 12 C 1.50600 * 122.91246 * 180.71134 * 11 10 9 13 13 C 1.52784 * 110.81990 * 340.23314 * 12 11 10 14 14 N 1.47237 * 107.90115 * 47.43337 * 13 12 11 15 15 C 1.36936 * 121.35091 * 115.67217 * 14 13 12 16 16 H 1.08001 * 119.99488 * 336.28258 * 15 14 13 17 17 C 1.38806 * 120.00238 * 156.28143 * 15 14 13 18 18 N 1.31625 * 119.99856 * 344.19944 * 17 15 14 19 19 Si 1.86802 * 120.00188 * 164.19543 * 17 15 14 20 20 H 1.48503 * 109.47088 * 89.99855 * 19 17 15 21 21 H 1.48494 * 109.47318 * 210.00245 * 19 17 15 22 22 H 1.48505 * 109.46862 * 330.00210 * 19 17 15 23 23 C 1.46691 * 117.30117 * 295.64817 * 14 13 12 24 24 H 1.09003 * 109.46806 * 64.86113 * 1 2 3 25 25 H 1.08995 * 109.47332 * 184.86110 * 1 2 3 26 26 H 1.08998 * 109.47339 * 304.86754 * 1 2 3 27 27 H 0.96994 * 119.99889 * 179.97438 * 2 1 3 28 28 H 1.08003 * 120.08563 * 359.97438 * 7 6 3 29 29 H 1.07997 * 120.14542 * 180.25247 * 8 7 6 30 30 H 1.07999 * 119.74622 * 179.97438 * 9 8 7 31 31 H 1.09000 * 109.19498 * 219.90712 * 12 11 10 32 32 H 1.08995 * 109.20506 * 100.56896 * 12 11 10 33 33 H 1.09004 * 109.77772 * 167.03572 * 13 12 11 34 34 H 1.09002 * 109.77895 * 287.77709 * 13 12 11 35 35 H 0.97006 * 119.99529 * 179.97438 * 18 17 15 36 36 H 1.08997 * 109.43563 * 164.40375 * 23 14 13 37 37 H 1.08994 * 109.43973 * 284.28179 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4341 0.0000 4 8 1.7025 2.2383 -1.0119 5 8 3.6741 1.1000 0.0202 6 6 1.9521 2.2334 1.5328 7 6 1.2915 3.4443 1.5404 8 6 1.0222 4.0732 2.7415 9 6 1.4211 3.4867 3.9252 10 6 2.0895 2.2703 3.9186 11 6 2.3519 1.6388 2.7240 12 6 3.0578 0.3113 2.6379 13 6 3.8400 0.0280 3.9194 14 7 2.9529 0.3047 5.0615 15 6 2.5609 -0.6904 5.9166 16 1 2.5610 -1.7183 5.5851 17 6 2.1633 -0.3781 7.2093 18 7 2.4489 0.8014 7.7188 19 14 1.2228 -1.6317 8.2259 20 1 2.1820 -2.4700 8.9892 21 1 0.3208 -0.9261 9.1712 22 1 0.4180 -2.4958 7.3253 23 6 2.5064 1.6897 5.2466 24 1 -0.3633 0.4366 -0.9304 25 1 -0.3634 -1.0239 0.0871 26 1 -0.3634 0.5875 0.8431 27 1 1.9499 -0.8400 0.0004 28 1 0.9854 3.8999 0.6102 29 1 0.5018 5.0195 2.7535 30 1 1.2114 3.9779 4.8639 31 1 3.7468 0.3258 1.7933 32 1 2.3210 -0.4774 2.4858 33 1 4.1508 -1.0166 3.9385 34 1 4.7164 0.6743 3.9671 35 1 2.1707 1.0198 8.6221 36 1 1.6600 1.7093 5.9330 37 1 3.3225 2.2816 5.6610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284372379.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:13 Heat of formation + Delta-G solvation = -43.038896 kcal Electronic energy + Delta-G solvation = -22617.292255 eV Core-core repulsion = 19293.307802 eV Total energy + Delta-G solvation = -3323.984453 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.88989 -38.47307 -37.56723 -37.00259 -35.95561 -34.57104 -33.31469 -31.89375 -30.12464 -27.50798 -26.81974 -24.94510 -23.96097 -23.84788 -20.89583 -20.37612 -18.85610 -18.68808 -18.28469 -17.34334 -16.96242 -16.63938 -16.27069 -16.03123 -15.62226 -15.43658 -14.88497 -14.75264 -14.43815 -14.23543 -13.86743 -13.68974 -13.55959 -13.34264 -13.18098 -13.07106 -12.83716 -12.76510 -12.63958 -12.49500 -12.42714 -12.19265 -11.86328 -11.53528 -11.47103 -10.72819 -10.50685 -10.14402 -9.49764 -8.83795 -7.92919 -5.35217 -0.60535 -0.14501 0.38136 1.46858 1.48054 1.57506 2.01173 2.45950 2.48337 2.74754 3.24291 3.38071 3.57561 3.73479 3.87484 4.04250 4.17909 4.24572 4.38445 4.48249 4.53841 4.65147 4.69202 4.83410 4.89957 4.94673 5.00362 5.03734 5.05993 5.14304 5.26465 5.31682 5.44530 5.58836 5.74220 5.94181 6.11238 6.28389 7.07076 7.75117 8.30718 9.16453 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.021417 B = 0.005345 C = 0.004920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.052801 B = 5237.063264 C = 5689.824920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -1.110 6.110 3 S 2.722 3.278 4 O -0.980 6.980 5 O -0.984 6.984 6 C -0.691 4.691 7 C -0.036 4.036 8 C -0.139 4.139 9 C -0.071 4.071 10 C -0.130 4.130 11 C 0.023 3.977 12 C -0.149 4.149 13 C 0.141 3.859 14 N -0.611 5.611 15 C -0.260 4.260 16 H 0.077 0.923 17 C -0.052 4.052 18 N -0.940 5.940 19 Si 0.971 3.029 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.269 1.269 23 C 0.219 3.781 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.429 0.571 28 H 0.161 0.839 29 H 0.165 0.835 30 H 0.135 0.865 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.023 0.977 35 H 0.251 0.749 36 H 0.071 0.929 37 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.873 1.532 -14.804 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.873 5.873 3 S 2.811 3.189 4 O -0.970 6.970 5 O -0.974 6.974 6 C -0.778 4.778 7 C -0.055 4.055 8 C -0.158 4.158 9 C -0.090 4.090 10 C -0.132 4.132 11 C 0.022 3.978 12 C -0.187 4.187 13 C 0.015 3.985 14 N -0.334 5.334 15 C -0.389 4.389 16 H 0.095 0.905 17 C -0.247 4.247 18 N -0.586 5.586 19 Si 0.799 3.201 20 H -0.211 1.211 21 H -0.219 1.219 22 H -0.194 1.194 23 C 0.093 3.907 24 H 0.092 0.908 25 H 0.126 0.874 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.178 0.822 29 H 0.183 0.817 30 H 0.153 0.847 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -5.507 2.016 -15.311 16.395 hybrid contribution -0.283 -0.582 1.994 2.097 sum -5.790 1.434 -13.316 14.591 Atomic orbital electron populations 1.21698 0.77045 1.05880 1.02224 1.55004 1.17080 1.23592 1.91655 1.00932 0.72324 0.72780 0.72859 1.93514 1.78702 1.69408 1.55371 1.93503 1.32948 1.83691 1.87222 1.30826 1.17289 1.10605 1.19079 1.21148 0.92282 0.91899 1.00200 1.21486 1.01486 1.01567 0.91234 1.21654 0.93930 0.93434 0.99960 1.20881 0.99381 0.96293 0.96623 1.19239 0.92578 0.94900 0.91089 1.21754 1.00948 0.93927 1.02097 1.20976 0.91381 0.99893 0.86214 1.44293 1.54054 1.05098 1.29937 1.19551 1.38285 0.89273 0.91794 0.90515 1.25777 1.02490 0.99081 0.97352 1.70168 1.49509 1.23470 1.15502 0.85225 0.78311 0.78337 0.78266 1.21145 1.21945 1.19364 1.19399 0.97378 0.84113 0.89798 0.90828 0.87392 0.92455 0.73420 0.82184 0.81735 0.84718 0.86783 0.88429 0.90643 0.95931 0.93953 0.91129 0.97281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 11.13 127.77 1.42 2.64 16 2 N -1.11 -21.64 5.53 -206.55 -1.14 -22.78 16 3 S 2.72 72.80 5.01 -56.49 -0.28 72.52 16 4 O -0.98 -28.61 16.69 -128.00 -2.14 -30.75 16 5 O -0.98 -31.34 15.35 -128.00 -1.97 -33.30 16 6 C -0.69 -21.04 5.89 22.38 0.13 -20.91 16 7 C -0.04 -0.97 9.53 22.20 0.21 -0.76 16 8 C -0.14 -3.66 10.05 22.21 0.22 -3.44 16 9 C -0.07 -2.35 9.62 22.35 0.22 -2.14 16 10 C -0.13 -5.21 5.82 -19.83 -0.12 -5.32 16 11 C 0.02 0.85 5.76 -19.85 -0.11 0.74 16 12 C -0.15 -5.21 4.83 29.74 0.14 -5.07 16 13 C 0.14 5.92 6.51 86.17 0.56 6.48 16 14 N -0.61 -30.67 2.98 -704.19 -2.10 -32.77 16 15 C -0.26 -13.92 9.71 84.03 0.82 -13.11 16 16 H 0.08 3.93 7.88 -2.91 -0.02 3.90 16 17 C -0.05 -2.84 5.00 84.86 0.42 -2.42 16 18 N -0.94 -54.37 11.04 21.65 0.24 -54.13 16 19 Si 0.97 43.66 29.58 68.60 2.03 45.68 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.22 10.72 4.86 85.63 0.42 11.14 16 24 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.43 6.63 8.96 -96.75 -0.87 5.76 16 28 H 0.16 3.50 7.31 -2.91 -0.02 3.48 16 29 H 0.17 3.00 8.06 -2.91 -0.02 2.98 16 30 H 0.13 4.10 8.05 -2.91 -0.02 4.08 16 31 H 0.11 3.69 5.02 -2.39 -0.01 3.68 16 32 H 0.10 3.07 7.89 -2.39 -0.02 3.05 16 33 H 0.08 2.95 7.96 -2.39 -0.02 2.93 16 34 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.25 14.07 8.31 -92.70 -0.77 13.29 16 36 H 0.07 3.81 6.28 -2.39 -0.01 3.79 16 37 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -70.70 312.65 -0.79 -71.49 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: 0.23 Total: 16.21 kcal Atomic # 6 Polarization: -36.51 SS G_CDS: 4.34 Total: -32.17 kcal Atomic # 7 Polarization: -106.68 SS G_CDS: -3.00 Total: -109.68 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -4.10 Total: -64.05 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: 72.80 SS G_CDS: -0.28 Total: 72.52 kcal Total: -70.70 -0.79 -71.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284372379.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.448 kcal (2) G-P(sol) polarization free energy of solvation -70.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds