Wall clock time and date at job start Fri Apr 10 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47260 * 240.00173 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47194 * 120.00384 * 3 2 1 7 7 C 1.40050 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99574 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00515 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99482 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99432 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.47851 * 324.99760 * 12 11 9 14 14 C 1.52999 * 109.47073 * 204.99875 * 12 11 9 15 15 C 1.50696 * 109.47092 * 65.00021 * 14 12 11 16 16 C 1.38246 * 119.98635 * 90.00259 * 15 14 12 17 17 C 1.38216 * 120.01497 * 180.02562 * 16 15 14 18 18 C 1.38357 * 119.98603 * 359.97165 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38218 * 119.98918 * 359.46843 * 20 18 17 22 22 C 1.50707 * 109.47348 * 85.00096 * 12 11 9 23 23 N 1.34773 * 120.00409 * 179.97438 * 22 12 11 24 24 O 1.21284 * 119.99707 * 359.97438 * 22 12 11 25 25 H 0.96998 * 119.99778 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00362 * 0.02562 * 11 9 7 27 27 H 1.09006 * 109.47397 * 305.00253 * 14 12 11 28 28 H 1.09003 * 109.47313 * 184.99918 * 14 12 11 29 29 H 1.08003 * 119.99321 * 359.97438 * 16 15 14 30 30 H 1.08003 * 120.00776 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00645 * 179.69150 * 20 18 17 32 32 H 1.07996 * 119.99376 * 180.26107 * 21 20 18 33 33 H 0.97008 * 119.99822 * 0.02562 * 23 22 12 34 34 H 0.97000 * 120.00394 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2162 -4.9164 -0.0010 13 1 0.3062 -4.8103 0.5895 14 6 2.0941 -6.0119 0.6073 15 6 2.3527 -5.7003 2.0588 16 6 1.4908 -6.1726 3.0311 17 6 1.7272 -5.8866 4.3626 18 6 2.8269 -5.1280 4.7223 19 17 3.1247 -4.7690 6.3944 20 6 3.6860 -4.6511 3.7484 21 6 3.4515 -4.9421 2.4177 22 6 0.8561 -5.2892 -1.4161 23 7 0.1751 -6.4261 -1.6610 24 8 1.1792 -4.5661 -2.3347 25 1 -0.4850 0.8400 0.0004 26 1 2.9188 -3.6478 -0.0020 27 1 3.0420 -6.0577 0.0711 28 1 1.5845 -6.9722 0.5271 29 1 0.6322 -6.7645 2.7502 30 1 1.0536 -6.2554 5.1220 31 1 4.5418 -4.0547 4.0281 32 1 4.1245 -4.5734 1.6577 33 1 -0.0837 -7.0043 -0.9263 34 1 -0.0564 -6.6663 -2.5719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286475898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:17 Heat of formation + Delta-G solvation = -66.378248 kcal Electronic energy + Delta-G solvation = -21298.403753 eV Core-core repulsion = 17835.530429 eV Total energy + Delta-G solvation = -3462.873324 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.071 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.81120 -38.85453 -36.90896 -36.46529 -34.39036 -33.15095 -32.40088 -31.35962 -30.98644 -28.51616 -26.05639 -24.24195 -22.82628 -21.22553 -20.55621 -19.34624 -17.43148 -17.05461 -17.01404 -16.34479 -15.55825 -15.36011 -15.16876 -14.32071 -14.29068 -13.90754 -13.69129 -13.47801 -13.30856 -13.17789 -12.40038 -12.32584 -12.01593 -11.54034 -11.37536 -11.35100 -11.06920 -10.99582 -10.90733 -10.77840 -10.39976 -10.21122 -9.51892 -9.29701 -8.97276 -8.78905 -8.48141 -7.64733 -7.53577 -6.13558 -4.57716 1.18002 1.36438 2.16286 3.16743 3.20283 3.24549 3.26439 3.65097 3.89743 4.15095 4.59600 4.67363 4.75786 4.86440 4.92481 5.20205 5.28615 5.36910 5.48959 5.55552 5.64192 5.78211 5.97451 5.99153 6.17037 6.25015 6.29067 6.58834 6.84905 7.12103 7.48387 7.61895 7.91754 8.06222 8.34762 8.76826 9.08036 9.52423 10.64756 10.83063 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.005911 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.000679 B = 4735.874910 C = 6816.192275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.088 3.912 3 Si 0.906 3.094 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.564 3.436 10 O -0.579 6.579 11 N -0.738 5.738 12 C 0.146 3.854 13 H 0.104 0.896 14 C -0.083 4.083 15 C -0.065 4.065 16 C -0.104 4.104 17 C -0.111 4.111 18 C -0.038 4.038 19 Cl -0.081 7.081 20 C -0.105 4.105 21 C -0.088 4.088 22 C 0.501 3.499 23 N -0.866 5.866 24 O -0.520 6.520 25 H 0.268 0.732 26 H 0.382 0.618 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.395 0.605 34 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.509 -15.347 7.418 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.577 4.577 8 H 0.085 0.915 9 C 0.368 3.632 10 O -0.461 6.461 11 N -0.393 5.393 12 C 0.034 3.966 13 H 0.122 0.878 14 C -0.121 4.121 15 C -0.066 4.066 16 C -0.122 4.122 17 C -0.129 4.129 18 C -0.065 4.065 19 Cl -0.052 7.052 20 C -0.124 4.124 21 C -0.106 4.106 22 C 0.283 3.717 23 N -0.431 5.431 24 O -0.393 6.393 25 H 0.079 0.921 26 H 0.214 0.786 27 H 0.100 0.900 28 H 0.102 0.898 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.222 0.778 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 4.759 -14.546 7.105 16.873 hybrid contribution 0.571 0.504 0.082 0.766 sum 5.330 -14.042 7.187 16.650 Atomic orbital electron populations 1.70007 1.07031 1.27252 1.35362 1.25678 0.94601 1.00200 0.92641 0.86459 0.79862 0.81167 0.79413 1.19268 1.20599 1.19298 1.20765 0.93463 0.89230 1.54192 0.91546 1.18147 0.87145 0.82199 0.75659 1.90586 1.14125 1.86502 1.54925 1.45924 1.08248 1.03323 1.81794 1.20391 0.97870 0.86891 0.91422 0.87799 1.20866 1.01309 0.98019 0.91946 1.19775 0.94756 0.97059 0.94980 1.20953 0.99103 1.00424 0.91737 1.20958 0.96385 0.98734 0.96850 1.20889 0.98350 1.02267 0.84952 1.98354 1.95790 1.93937 1.17139 1.21025 0.99499 0.99723 0.92141 1.21008 0.97485 0.96756 0.95353 1.21735 0.76937 0.79909 0.93072 1.43998 1.61524 1.25652 1.11949 1.90739 1.52658 1.49687 1.46230 0.92146 0.78586 0.89969 0.89775 0.85190 0.85230 0.85025 0.85007 0.77775 0.77700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.56 11.83 55.55 0.66 -22.90 16 2 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 3 Si 0.91 20.71 29.56 -169.99 -5.02 15.69 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -0.54 -15.51 9.54 -35.63 -0.34 -15.85 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.56 16.10 7.58 -12.98 -0.10 16.00 16 10 O -0.58 -18.80 14.68 5.20 0.08 -18.72 16 11 N -0.74 -16.11 4.05 -56.34 -0.23 -16.33 16 12 C 0.15 2.56 2.37 -69.08 -0.16 2.39 16 13 H 0.10 2.01 7.58 -51.93 -0.39 1.62 16 14 C -0.08 -0.99 4.83 -27.89 -0.13 -1.12 16 15 C -0.07 -0.83 4.95 -104.62 -0.52 -1.35 16 16 C -0.10 -1.22 9.70 -39.59 -0.38 -1.60 16 17 C -0.11 -1.33 9.83 -39.55 -0.39 -1.72 16 18 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 19 Cl -0.08 -0.98 28.96 -51.86 -1.50 -2.48 16 20 C -0.11 -1.36 9.83 -39.55 -0.39 -1.75 16 21 C -0.09 -1.14 9.09 -39.59 -0.36 -1.50 16 22 C 0.50 9.19 7.46 -10.98 -0.08 9.11 16 23 N -0.87 -10.60 8.73 31.22 0.27 -10.33 16 24 O -0.52 -12.48 17.16 5.55 0.10 -12.39 16 25 H 0.27 7.49 8.29 -40.82 -0.34 7.16 16 26 H 0.38 7.41 7.80 -40.82 -0.32 7.09 16 27 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 28 H 0.08 0.71 7.37 -51.93 -0.38 0.33 16 29 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 30 H 0.13 1.31 8.06 -52.48 -0.42 0.88 16 31 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.13 1.56 7.57 -52.49 -0.40 1.16 16 33 H 0.39 3.32 8.19 -40.82 -0.33 2.98 16 34 H 0.39 4.36 8.93 -40.82 -0.36 4.00 16 LS Contribution 319.13 15.07 4.81 4.81 Total: -1.00 -38.96 319.13 -7.47 -46.44 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -3.42 Total: 11.92 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: -3.20 Total: 4.30 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: 0.70 Total: -49.56 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: 0.17 Total: -31.11 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -38.96 -7.47 -46.44 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286475898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.942 kcal (2) G-P(sol) polarization free energy of solvation -38.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds