Wall clock time and date at job start Fri Apr 10 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86798 * 120.00229 * 2 1 4 4 H 1.48498 * 109.47260 * 240.00173 * 3 2 1 5 5 H 1.48499 * 109.47329 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47194 * 120.00384 * 3 2 1 7 7 C 1.40050 * 119.99934 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00291 * 179.97438 * 7 2 1 9 9 C 1.46380 * 119.99574 * 359.97438 * 7 2 1 10 10 O 1.21686 * 120.00515 * 0.02562 * 9 7 2 11 11 N 1.34784 * 119.99482 * 179.97438 * 9 7 2 12 12 C 1.46496 * 119.99432 * 179.97438 * 11 9 7 13 13 H 1.09001 * 109.47851 * 324.99760 * 12 11 9 14 14 C 1.52999 * 109.47073 * 204.99875 * 12 11 9 15 15 C 1.50696 * 109.47092 * 65.00021 * 14 12 11 16 16 C 1.38246 * 119.98635 * 90.00259 * 15 14 12 17 17 C 1.38216 * 120.01497 * 180.02562 * 16 15 14 18 18 C 1.38357 * 119.98603 * 359.97165 * 17 16 15 19 19 Cl 1.73599 * 120.01134 * 180.02562 * 18 17 16 20 20 C 1.38347 * 119.97107 * 0.28224 * 18 17 16 21 21 C 1.38218 * 119.98918 * 359.46843 * 20 18 17 22 22 C 1.50707 * 109.47348 * 85.00096 * 12 11 9 23 23 N 1.34773 * 120.00409 * 179.97438 * 22 12 11 24 24 O 1.21284 * 119.99707 * 359.97438 * 22 12 11 25 25 H 0.96998 * 119.99778 * 359.97438 * 1 2 3 26 26 H 0.96997 * 120.00362 * 0.02562 * 11 9 7 27 27 H 1.09006 * 109.47397 * 305.00253 * 14 12 11 28 28 H 1.09003 * 109.47313 * 184.99918 * 14 12 11 29 29 H 1.08003 * 119.99321 * 359.97438 * 16 15 14 30 30 H 1.08003 * 120.00776 * 179.97438 * 17 16 15 31 31 H 1.08000 * 120.00645 * 179.69150 * 20 18 17 32 32 H 1.07996 * 119.99376 * 180.26107 * 21 20 18 33 33 H 0.97008 * 119.99822 * 0.02562 * 23 22 12 34 34 H 0.97000 * 120.00394 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2758 2.7465 0.0006 6 1 3.0946 1.6963 1.2124 7 6 2.0069 -1.2129 -0.0005 8 1 3.0869 -1.2129 -0.0010 9 6 1.2749 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9488 -3.6478 -0.0016 12 6 1.2162 -4.9164 -0.0010 13 1 0.3062 -4.8103 0.5895 14 6 2.0941 -6.0119 0.6073 15 6 2.3527 -5.7003 2.0588 16 6 1.4908 -6.1726 3.0311 17 6 1.7272 -5.8866 4.3626 18 6 2.8269 -5.1280 4.7223 19 17 3.1247 -4.7690 6.3944 20 6 3.6860 -4.6511 3.7484 21 6 3.4515 -4.9421 2.4177 22 6 0.8561 -5.2892 -1.4161 23 7 0.1751 -6.4261 -1.6610 24 8 1.1792 -4.5661 -2.3347 25 1 -0.4850 0.8400 0.0004 26 1 2.9188 -3.6478 -0.0020 27 1 3.0420 -6.0577 0.0711 28 1 1.5845 -6.9722 0.5271 29 1 0.6322 -6.7645 2.7502 30 1 1.0536 -6.2554 5.1220 31 1 4.5418 -4.0547 4.0281 32 1 4.1245 -4.5734 1.6577 33 1 -0.0837 -7.0043 -0.9263 34 1 -0.0564 -6.6663 -2.5719 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286475898.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:17 Heat of formation + Delta-G solvation = -97.035021 kcal Electronic energy + Delta-G solvation = -21299.733131 eV Core-core repulsion = 17835.530429 eV Total energy + Delta-G solvation = -3464.202702 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.071 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.11436 -40.03583 -38.84846 -37.49101 -35.89100 -34.67879 -34.38082 -32.81062 -31.93792 -29.94817 -27.99135 -25.52408 -23.78408 -22.44990 -22.15382 -20.95509 -19.24775 -18.46003 -18.00392 -17.77179 -17.42107 -16.53820 -16.34111 -15.92978 -15.84595 -15.39853 -15.11606 -14.45051 -14.39260 -14.35111 -14.26537 -13.95310 -13.52672 -12.99433 -12.77884 -12.68215 -12.58111 -12.38825 -12.24622 -12.12374 -12.03144 -11.70866 -11.11866 -10.87936 -10.57559 -9.92128 -9.84227 -9.53756 -9.38473 -8.26497 -6.80795 0.20006 0.42236 1.19995 1.38341 1.42421 1.52933 1.73525 2.24308 2.41780 2.63662 2.79933 3.12259 3.70623 3.80792 3.86812 4.00501 4.02913 4.25572 4.37515 4.45758 4.48707 4.71752 4.80910 4.96676 5.08111 5.30616 5.33003 5.33981 5.62256 5.90190 5.92515 5.98280 6.16908 6.26758 6.60083 6.90317 7.47653 7.55342 8.53538 8.71600 Molecular weight = 296.07amu Principal moments of inertia in cm(-1) A = 0.010544 B = 0.005911 C = 0.004107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.000679 B = 4735.874910 C = 6816.192275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.991 3.009 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.252 1.252 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.551 3.449 10 O -0.629 6.629 11 N -0.728 5.728 12 C 0.144 3.856 13 H 0.087 0.913 14 C -0.068 4.068 15 C -0.079 4.079 16 C -0.104 4.104 17 C -0.119 4.119 18 C -0.051 4.051 19 Cl -0.079 7.079 20 C -0.120 4.120 21 C -0.102 4.102 22 C 0.498 3.502 23 N -0.833 5.833 24 O -0.586 6.586 25 H 0.272 0.728 26 H 0.394 0.606 27 H 0.094 0.906 28 H 0.128 0.872 29 H 0.160 0.840 30 H 0.148 0.852 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.418 0.582 34 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.403 -16.538 7.842 19.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.811 3.189 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.355 3.645 10 O -0.516 6.516 11 N -0.381 5.381 12 C 0.034 3.966 13 H 0.104 0.896 14 C -0.106 4.106 15 C -0.079 4.079 16 C -0.122 4.122 17 C -0.137 4.137 18 C -0.078 4.078 19 Cl -0.050 7.050 20 C -0.139 4.139 21 C -0.120 4.120 22 C 0.281 3.719 23 N -0.399 5.399 24 O -0.465 6.465 25 H 0.082 0.918 26 H 0.228 0.772 27 H 0.112 0.888 28 H 0.146 0.854 29 H 0.177 0.823 30 H 0.165 0.835 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.250 0.750 34 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.671 -15.856 7.558 18.459 hybrid contribution 0.264 0.721 -0.012 0.768 sum 5.935 -15.135 7.546 17.923 Atomic orbital electron populations 1.70179 1.09401 1.28714 1.36885 1.26903 0.95501 1.04780 0.91325 0.85169 0.78347 0.75177 0.80219 1.18226 1.19896 1.17550 1.21362 0.94583 0.90343 1.54611 0.89828 1.18396 0.86712 0.84185 0.75175 1.90533 1.16148 1.87782 1.57141 1.45472 1.08798 1.03604 1.80199 1.20619 0.97992 0.86643 0.91387 0.89566 1.20853 1.01215 0.97463 0.91066 1.19930 0.94996 0.97464 0.95521 1.21337 0.99501 1.00039 0.91361 1.21269 0.96335 0.98431 0.97692 1.21107 0.98846 1.02640 0.85171 1.98350 1.95816 1.93957 1.16880 1.21204 1.00079 1.00229 0.92396 1.21227 0.98131 0.97053 0.95609 1.21810 0.76947 0.80635 0.92496 1.43630 1.58878 1.23769 1.13593 1.90718 1.55748 1.52189 1.47844 0.91792 0.77248 0.88752 0.85388 0.82284 0.83467 0.84366 0.84461 0.75031 0.76436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.91 11.83 21.84 0.26 -51.65 16 2 C 0.03 1.72 5.50 85.31 0.47 2.18 16 3 Si 0.99 42.67 29.56 68.60 2.03 44.70 16 4 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 5 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.25 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.57 -33.44 9.54 24.83 0.24 -33.20 16 8 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 9 C 0.55 32.30 7.58 86.36 0.65 32.95 16 10 O -0.63 -42.37 14.68 -4.30 -0.06 -42.44 16 11 N -0.73 -31.95 4.05 -450.38 -1.83 -33.78 16 12 C 0.14 4.93 2.37 44.25 0.10 5.03 16 13 H 0.09 3.31 7.58 -2.39 -0.02 3.29 16 14 C -0.07 -1.43 4.83 29.85 0.14 -1.29 16 15 C -0.08 -1.83 4.95 -19.86 -0.10 -1.93 16 16 C -0.10 -2.19 9.70 22.27 0.22 -1.97 16 17 C -0.12 -2.65 9.83 22.29 0.22 -2.43 16 18 C -0.05 -1.28 6.32 22.32 0.14 -1.13 16 19 Cl -0.08 -1.84 28.96 -2.72 -0.08 -1.92 16 20 C -0.12 -3.05 9.83 22.29 0.22 -2.83 16 21 C -0.10 -2.55 9.09 22.27 0.20 -2.35 16 22 C 0.50 17.84 7.46 87.66 0.65 18.49 16 23 N -0.83 -18.34 8.73 -173.53 -1.52 -19.85 16 24 O -0.59 -28.50 17.16 -3.04 -0.05 -28.56 16 25 H 0.27 15.67 8.29 -92.71 -0.77 14.90 16 26 H 0.39 15.23 7.80 -92.71 -0.72 14.51 16 27 H 0.09 1.81 8.09 -2.38 -0.02 1.79 16 28 H 0.13 1.56 7.37 -2.39 -0.02 1.54 16 29 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.15 2.66 8.06 -2.91 -0.02 2.63 16 31 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 32 H 0.14 3.13 7.57 -2.91 -0.02 3.11 16 33 H 0.42 5.44 8.19 -92.70 -0.76 4.68 16 34 H 0.40 8.00 8.93 -92.71 -0.83 7.17 16 Total: -1.00 -89.28 319.13 0.78 -88.50 By element: Atomic # 1 Polarization: 34.59 SS G_CDS: -1.13 Total: 33.46 kcal Atomic # 6 Polarization: 8.38 SS G_CDS: 3.16 Total: 11.54 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -3.08 Total: -105.28 kcal Atomic # 8 Polarization: -70.88 SS G_CDS: -0.12 Total: -70.99 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -89.28 0.78 -88.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286475898.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.537 kcal (2) G-P(sol) polarization free energy of solvation -89.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds