Wall clock time and date at job start Fri Apr 10 2020 17:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34768 * 117.00608 * 2 1 4 4 O 1.21530 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.47312 * 120.00335 * 179.97438 * 3 2 1 6 6 C 1.41638 * 120.26541 * 359.97438 * 5 3 2 7 7 C 1.35952 * 119.00899 * 180.02562 * 6 5 3 8 8 N 1.48020 * 120.25438 * 179.97438 * 7 6 5 9 9 O 1.21800 * 119.99594 * 359.97438 * 8 7 6 10 10 O 1.21795 * 120.00017 * 180.02562 * 8 7 6 11 11 C 1.40785 * 119.49940 * 359.76270 * 7 6 5 12 12 O 1.21952 * 119.74266 * 180.24446 * 11 7 6 13 13 N 1.34534 * 120.51248 * 0.51044 * 11 7 6 14 14 C 1.46505 * 119.47162 * 179.73347 * 13 11 7 15 15 C 1.52997 * 109.47212 * 269.73029 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.34568 * 121.05737 * 359.46038 * 13 11 7 25 25 H 1.08999 * 109.46814 * 60.00083 * 1 2 3 26 26 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46781 * 300.00542 * 1 2 3 28 28 H 1.08006 * 120.50015 * 359.97438 * 6 5 3 29 29 H 1.09002 * 109.47068 * 29.73090 * 14 13 11 30 30 H 1.09001 * 109.47372 * 149.73177 * 14 13 11 31 31 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 32 32 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 33 33 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 34 34 H 1.08001 * 119.77557 * 180.27328 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4021 2.2200 0.0005 5 6 3.5350 1.2778 0.0006 6 6 4.3119 0.0934 0.0017 7 6 5.6677 0.1943 0.0027 8 7 6.5062 -1.0255 0.0044 9 8 5.9819 -2.1249 0.0054 10 8 7.7204 -0.9298 0.0058 11 6 6.2681 1.4676 -0.0024 12 8 7.4839 1.5632 -0.0060 13 7 5.5111 2.5798 0.0020 14 6 6.1600 3.8933 0.0025 15 6 6.3843 4.3509 1.4451 16 6 7.0522 5.7017 1.4457 17 1 7.2924 6.1857 0.5105 18 6 7.3559 6.3203 2.6399 19 7 7.0629 5.7311 3.7786 20 14 8.1845 7.9944 2.6406 21 1 7.1493 9.0591 2.6380 22 1 9.0292 8.1282 3.8545 23 1 9.0337 8.1269 1.4295 24 6 4.1675 2.5051 0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8344 -0.8754 0.0025 29 1 7.1194 3.8248 -0.5103 30 1 5.5236 4.6132 -0.5122 31 1 5.4248 4.4194 1.9579 32 1 7.0207 3.6311 1.9599 33 1 7.2762 6.1664 4.6189 34 1 3.5800 3.4113 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000298435465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:21 Heat of formation + Delta-G solvation = -89.127862 kcal Electronic energy + Delta-G solvation = -23505.303243 eV Core-core repulsion = 19600.734257 eV Total energy + Delta-G solvation = -3904.568986 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.42281 -41.37979 -40.47938 -37.55203 -36.67878 -36.15380 -35.70250 -33.34459 -31.34542 -30.45367 -28.09398 -26.82274 -25.97775 -24.42903 -23.49150 -21.95083 -21.20079 -19.46317 -18.81302 -17.75745 -17.65819 -17.44268 -17.30807 -16.86570 -16.66328 -16.53538 -15.77540 -15.41571 -14.61730 -14.35283 -13.69171 -13.68013 -13.46386 -13.22455 -12.85038 -12.41280 -12.31619 -11.85321 -11.34913 -11.27329 -11.21848 -11.15723 -11.12841 -10.88309 -10.85802 -10.67826 -10.46558 -10.27601 -9.91048 -9.54762 -8.68120 -8.63323 -6.27521 -4.34379 -0.30970 0.60811 1.25758 1.33835 2.09195 2.29137 2.54248 3.12615 3.18192 3.26056 3.28577 3.91190 4.11058 4.13744 4.22976 4.29830 4.81067 4.83870 4.90001 4.95677 5.09691 5.22477 5.26474 5.32793 5.71059 5.80503 5.97136 6.10175 6.37461 6.53163 7.15073 7.27909 7.37034 7.49352 7.65287 7.90914 7.96948 8.69728 9.32420 10.83657 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004582 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.484350 B = 6109.960675 C = 7762.327876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.355 6.355 3 C 0.537 3.463 4 O -0.507 6.507 5 C -0.277 4.277 6 C 0.118 3.882 7 C -0.197 4.197 8 N 0.055 4.945 9 O -0.190 6.190 10 O -0.127 6.127 11 C 0.533 3.467 12 O -0.460 6.460 13 N -0.462 5.462 14 C 0.078 3.922 15 C 0.012 3.988 16 C -0.532 4.532 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.271 1.271 24 C 0.293 3.707 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.174 0.826 29 H 0.107 0.893 30 H 0.099 0.901 31 H 0.025 0.975 32 H 0.031 0.969 33 H 0.266 0.734 34 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.479 -9.361 -8.662 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.271 6.271 3 C 0.382 3.618 4 O -0.396 6.396 5 C -0.285 4.285 6 C 0.095 3.905 7 C -0.287 4.287 8 N 0.572 4.428 9 O -0.395 6.395 10 O -0.350 6.350 11 C 0.328 3.672 12 O -0.333 6.333 13 N -0.163 5.163 14 C -0.039 4.039 15 C -0.026 4.026 16 C -0.570 4.570 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.525 5.525 20 Si 0.729 3.271 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.150 3.850 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.191 0.809 29 H 0.125 0.875 30 H 0.117 0.883 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -13.166 -8.428 -8.471 17.780 hybrid contribution 0.286 0.601 0.242 0.709 sum -12.880 -7.827 -8.229 17.172 Atomic orbital electron populations 1.23330 0.75220 1.04007 1.02907 1.86516 1.24069 1.32026 1.84488 1.19992 0.87265 0.81853 0.72726 1.90903 1.66235 1.35692 1.46778 1.18133 0.91096 0.91832 1.27426 1.21539 0.90680 1.00786 0.77488 1.21395 0.91293 0.87044 1.28970 1.42718 1.01387 1.01010 0.97698 1.94497 1.76663 1.12354 1.55972 1.94648 0.94817 1.93537 1.51984 1.16049 0.87974 0.83103 0.80068 1.91144 1.11261 1.85647 1.45291 1.46149 1.05755 1.12079 1.52359 1.23129 0.99410 0.76232 1.05136 1.19504 0.98414 0.97682 0.86967 1.20870 1.40988 1.02094 0.93045 0.91904 1.24998 0.95315 0.98306 0.95354 1.69952 1.46533 1.38480 0.97556 0.86437 0.79472 0.83303 0.77930 1.20412 1.20957 1.19579 1.22936 0.84213 1.00086 0.77788 0.91607 0.87751 0.91514 0.80904 0.87458 0.88294 0.95691 0.95093 0.92464 0.78392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.25 10.57 101.05 1.07 1.31 16 2 O -0.35 -3.29 9.87 -40.68 -0.40 -3.69 16 3 C 0.54 5.83 7.89 34.42 0.27 6.11 16 4 O -0.51 -6.46 16.11 -19.29 -0.31 -6.77 16 5 C -0.28 -3.07 5.87 -104.97 -0.62 -3.69 16 6 C 0.12 1.39 9.16 -39.11 -0.36 1.03 16 7 C -0.20 -3.09 6.87 -79.80 -0.55 -3.64 16 8 N 0.05 0.97 4.45 34.03 0.15 1.12 16 9 O -0.19 -3.13 18.46 -29.46 -0.54 -3.68 16 10 O -0.13 -2.54 17.42 -36.42 -0.63 -3.17 16 11 C 0.53 9.37 7.40 -15.41 -0.11 9.25 16 12 O -0.46 -9.90 14.73 -16.91 -0.25 -10.15 16 13 N -0.46 -6.93 2.55 -119.29 -0.30 -7.24 16 14 C 0.08 1.32 5.25 -4.04 -0.02 1.29 16 15 C 0.01 0.27 5.30 -27.89 -0.15 0.12 16 16 C -0.53 -13.52 9.11 -34.44 -0.31 -13.83 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.16 13.29 55.43 0.74 -24.43 16 20 Si 0.90 20.32 29.54 -169.99 -5.02 15.30 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 C 0.29 3.40 9.85 -16.41 -0.16 3.24 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.17 1.66 7.24 -52.48 -0.38 1.28 16 29 H 0.11 1.92 7.36 -51.93 -0.38 1.53 16 30 H 0.10 1.33 8.00 -51.93 -0.42 0.92 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 34 H 0.20 1.82 7.57 -52.49 -0.40 1.42 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -32.89 317.35 -6.06 -38.95 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: -3.23 Total: -3.84 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: -1.04 Total: 2.80 kcal Atomic # 7 Polarization: -31.13 SS G_CDS: 0.58 Total: -30.54 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -2.14 Total: -27.46 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.89 -6.06 -38.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298435465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.179 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds