Wall clock time and date at job start Fri Apr 10 2020 17:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34768 * 117.00608 * 2 1 4 4 O 1.21530 * 119.99672 * 0.02562 * 3 2 1 5 5 C 1.47312 * 120.00335 * 179.97438 * 3 2 1 6 6 C 1.41638 * 120.26541 * 359.97438 * 5 3 2 7 7 C 1.35952 * 119.00899 * 180.02562 * 6 5 3 8 8 N 1.48020 * 120.25438 * 179.97438 * 7 6 5 9 9 O 1.21800 * 119.99594 * 359.97438 * 8 7 6 10 10 O 1.21795 * 120.00017 * 180.02562 * 8 7 6 11 11 C 1.40785 * 119.49940 * 359.76270 * 7 6 5 12 12 O 1.21952 * 119.74266 * 180.24446 * 11 7 6 13 13 N 1.34534 * 120.51248 * 0.51044 * 11 7 6 14 14 C 1.46505 * 119.47162 * 179.73347 * 13 11 7 15 15 C 1.52997 * 109.47212 * 269.73029 * 14 13 11 16 16 C 1.50697 * 109.47466 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99890 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00428 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99563 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00432 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46838 * 89.99826 * 20 18 16 22 22 H 1.48497 * 109.47419 * 209.99978 * 20 18 16 23 23 H 1.48499 * 109.47011 * 330.00539 * 20 18 16 24 24 C 1.34568 * 121.05737 * 359.46038 * 13 11 7 25 25 H 1.08999 * 109.46814 * 60.00083 * 1 2 3 26 26 H 1.08997 * 109.47159 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46781 * 300.00542 * 1 2 3 28 28 H 1.08006 * 120.50015 * 359.97438 * 6 5 3 29 29 H 1.09002 * 109.47068 * 29.73090 * 14 13 11 30 30 H 1.09001 * 109.47372 * 149.73177 * 14 13 11 31 31 H 1.09002 * 109.47153 * 300.00008 * 15 14 13 32 32 H 1.08998 * 109.47533 * 59.99637 * 15 14 13 33 33 H 0.97002 * 119.99731 * 180.02562 * 19 18 16 34 34 H 1.08001 * 119.77557 * 180.27328 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4021 2.2200 0.0005 5 6 3.5350 1.2778 0.0006 6 6 4.3119 0.0934 0.0017 7 6 5.6677 0.1943 0.0027 8 7 6.5062 -1.0255 0.0044 9 8 5.9819 -2.1249 0.0054 10 8 7.7204 -0.9298 0.0058 11 6 6.2681 1.4676 -0.0024 12 8 7.4839 1.5632 -0.0060 13 7 5.5111 2.5798 0.0020 14 6 6.1600 3.8933 0.0025 15 6 6.3843 4.3509 1.4451 16 6 7.0522 5.7017 1.4457 17 1 7.2924 6.1857 0.5105 18 6 7.3559 6.3203 2.6399 19 7 7.0629 5.7311 3.7786 20 14 8.1845 7.9944 2.6406 21 1 7.1493 9.0591 2.6380 22 1 9.0292 8.1282 3.8545 23 1 9.0337 8.1269 1.4295 24 6 4.1675 2.5051 0.0006 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 3.8344 -0.8754 0.0025 29 1 7.1194 3.8248 -0.5103 30 1 5.5236 4.6132 -0.5122 31 1 5.4248 4.4194 1.9579 32 1 7.0207 3.6311 1.9599 33 1 7.2762 6.1664 4.6189 34 1 3.5800 3.4113 -0.0002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000298435465.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:20 Heat of formation + Delta-G solvation = -108.768118 kcal Electronic energy + Delta-G solvation = -23506.154908 eV Core-core repulsion = 19600.734257 eV Total energy + Delta-G solvation = -3905.420652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.093 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.68752 -42.66386 -41.37163 -38.83083 -37.58483 -37.45660 -37.01296 -35.17907 -32.58557 -32.05441 -28.78446 -28.04436 -27.59661 -25.47494 -25.00453 -23.33681 -22.40154 -20.65606 -20.08107 -19.06445 -18.79102 -18.71447 -18.51016 -18.36816 -17.53867 -17.51895 -17.14213 -16.77241 -16.41276 -15.37073 -15.09598 -14.62119 -14.49004 -14.42245 -14.24634 -13.96234 -13.33094 -12.97329 -12.91219 -12.79406 -12.71856 -12.52263 -12.30353 -12.25299 -12.16151 -11.85105 -11.78552 -11.72035 -11.55837 -11.40360 -10.65161 -9.92655 -8.29942 -6.42482 -1.45866 -0.42371 -0.07069 0.10241 0.99502 1.26452 1.40741 1.43040 1.53021 1.58849 1.99796 2.36884 2.79322 3.06804 3.08605 3.13271 3.30113 3.72920 3.97669 4.07386 4.21862 4.26100 4.38850 4.45060 4.54945 4.65418 4.83015 5.05112 5.17000 5.24010 5.29513 5.45588 5.66464 5.99764 6.21603 6.52994 6.54523 6.72691 7.28920 8.82269 Molecular weight = 296.09amu Principal moments of inertia in cm(-1) A = 0.013579 B = 0.004582 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2061.484350 B = 6109.960675 C = 7762.327876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.353 6.353 3 C 0.546 3.454 4 O -0.522 6.522 5 C -0.259 4.259 6 C 0.152 3.848 7 C -0.221 4.221 8 N 0.058 4.942 9 O -0.139 6.139 10 O -0.217 6.217 11 C 0.526 3.474 12 O -0.517 6.517 13 N -0.465 5.465 14 C 0.095 3.905 15 C 0.017 3.983 16 C -0.542 4.542 17 H 0.077 0.923 18 C 0.005 3.995 19 N -0.931 5.931 20 Si 0.968 3.032 21 H -0.265 1.265 22 H -0.290 1.290 23 H -0.262 1.262 24 C 0.302 3.698 25 H 0.070 0.930 26 H 0.134 0.866 27 H 0.065 0.935 28 H 0.206 0.794 29 H 0.093 0.907 30 H 0.145 0.855 31 H 0.018 0.982 32 H -0.019 1.019 33 H 0.265 0.735 34 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.653 -9.127 -9.895 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.269 6.269 3 C 0.391 3.609 4 O -0.413 6.413 5 C -0.266 4.266 6 C 0.129 3.871 7 C -0.311 4.311 8 N 0.570 4.430 9 O -0.361 6.361 10 O -0.417 6.417 11 C 0.325 3.675 12 O -0.395 6.395 13 N -0.167 5.167 14 C -0.023 4.023 15 C -0.021 4.021 16 C -0.580 4.580 17 H 0.095 0.905 18 C -0.194 4.194 19 N -0.571 5.571 20 Si 0.792 3.208 21 H -0.190 1.190 22 H -0.216 1.216 23 H -0.186 1.186 24 C 0.161 3.839 25 H 0.088 0.912 26 H 0.152 0.848 27 H 0.084 0.916 28 H 0.222 0.778 29 H 0.111 0.889 30 H 0.163 0.837 31 H 0.036 0.964 32 H 0.000 1.000 33 H 0.074 0.926 34 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.221 -8.118 -9.728 20.583 hybrid contribution 0.902 0.377 0.620 1.158 sum -15.319 -7.741 -9.108 19.431 Atomic orbital electron populations 1.23671 0.73270 1.06148 1.03110 1.86508 1.25862 1.30714 1.83824 1.19744 0.86640 0.82219 0.72301 1.90916 1.66417 1.36439 1.47511 1.18249 0.91646 0.91236 1.25513 1.21860 0.88744 1.02504 0.73969 1.21256 0.92075 0.85441 1.32335 1.42926 1.01332 1.01648 0.97100 1.94424 1.76234 1.12937 1.52465 1.94684 0.95966 1.93948 1.57125 1.16427 0.87597 0.84338 0.79186 1.91112 1.13614 1.86407 1.48325 1.45854 1.06902 1.10697 1.53210 1.22758 1.00503 0.77786 1.01230 1.19292 0.96647 0.95754 0.90368 1.21414 1.40124 1.02997 0.93500 0.90466 1.25945 0.96129 1.02203 0.95139 1.70091 1.48437 1.40340 0.98213 0.85392 0.78603 0.78994 0.77772 1.19039 1.21590 1.18612 1.23485 0.82661 1.01824 0.75913 0.91155 0.84750 0.91614 0.77754 0.88877 0.83716 0.96400 1.00036 0.92635 0.75261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.46 16 2 O -0.35 -5.01 9.87 -56.79 -0.56 -5.57 16 3 C 0.55 9.69 7.89 70.21 0.55 10.24 16 4 O -0.52 -11.36 16.11 19.74 0.32 -11.04 16 5 C -0.26 -4.86 5.87 -20.09 -0.12 -4.98 16 6 C 0.15 3.13 9.16 22.58 0.21 3.34 16 7 C -0.22 -6.81 6.87 36.47 0.25 -6.56 16 8 N 0.06 2.07 4.45 -46.24 -0.21 1.86 16 9 O -0.14 -4.36 18.46 18.89 0.35 -4.01 16 10 O -0.22 -9.32 17.42 25.54 0.45 -8.88 16 11 C 0.53 19.02 7.40 84.90 0.63 19.65 16 12 O -0.52 -23.90 14.73 15.75 0.23 -23.67 16 13 N -0.47 -13.62 2.55 -649.55 -1.66 -15.28 16 14 C 0.10 3.15 5.25 86.38 0.45 3.61 16 15 C 0.02 0.79 5.30 29.85 0.16 0.95 16 16 C -0.54 -27.67 9.11 25.60 0.23 -27.44 16 17 H 0.08 3.62 7.74 -2.91 -0.02 3.60 16 18 C 0.00 0.26 5.46 84.65 0.46 0.72 16 19 N -0.93 -54.18 13.29 21.45 0.28 -53.90 16 20 Si 0.97 41.70 29.54 68.60 2.03 43.72 16 21 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 22 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 23 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 24 C 0.30 6.16 9.85 84.23 0.83 6.99 16 25 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.21 2.96 7.24 -2.91 -0.02 2.94 16 29 H 0.09 3.39 7.36 -2.39 -0.02 3.37 16 30 H 0.15 3.46 8.00 -2.39 -0.02 3.44 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 32 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 33 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 34 H 0.23 3.26 7.57 -2.91 -0.02 3.24 16 Total: -1.00 -76.43 317.35 7.24 -69.20 By element: Atomic # 1 Polarization: -1.59 SS G_CDS: 1.15 Total: -0.44 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.86 Total: 7.99 kcal Atomic # 7 Polarization: -65.73 SS G_CDS: -1.58 Total: -67.31 kcal Atomic # 8 Polarization: -53.94 SS G_CDS: 0.78 Total: -53.16 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Total: -76.43 7.24 -69.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000298435465.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.572 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds