Wall clock time and date at job start Fri Apr 10 2020 17:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29025 * 124.91869 * 2 1 4 4 C 1.31780 * 117.12753 * 180.22917 * 3 2 1 5 5 C 1.50704 * 122.75159 * 179.75226 * 4 3 2 6 6 C 1.50703 * 109.46942 * 269.70771 * 5 4 3 7 7 O 1.21280 * 119.99782 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99919 * 179.97438 * 6 5 4 9 9 C 1.47572 * 134.49163 * 179.97438 * 8 6 5 10 10 C 1.53951 * 86.11583 * 155.36029 * 9 8 6 11 11 O 1.42897 * 113.74300 * 269.15347 * 10 9 8 12 12 C 1.50705 * 113.74111 * 137.95217 * 10 9 8 13 13 H 1.07995 * 119.99667 * 17.19322 * 12 10 9 14 14 C 1.37876 * 119.99899 * 197.19139 * 12 10 9 15 15 N 1.31516 * 119.99917 * 194.36987 * 14 12 10 16 16 Si 1.86802 * 120.00062 * 14.36608 * 14 12 10 17 17 H 1.48496 * 109.47125 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47124 * 300.00105 * 16 14 12 19 19 H 1.48498 * 109.47140 * 60.00316 * 16 14 12 20 20 C 1.47814 * 134.45384 * 359.86683 * 8 6 5 21 21 C 1.33634 * 114.49881 * 359.48143 * 4 3 2 22 22 C 1.50701 * 126.04214 * 180.27103 * 21 4 3 23 23 S 1.70975 * 124.91662 * 179.69755 * 2 1 3 24 24 H 1.08997 * 109.47055 * 180.32711 * 1 2 3 25 25 H 1.08994 * 109.46667 * 300.33024 * 1 2 3 26 26 H 1.08998 * 109.46761 * 60.32818 * 1 2 3 27 27 H 1.08993 * 109.46770 * 149.70751 * 5 4 3 28 28 H 1.09003 * 109.47034 * 29.71025 * 5 4 3 29 29 H 1.09001 * 113.77187 * 41.06251 * 9 8 6 30 30 H 1.08998 * 113.77370 * 269.65834 * 9 8 6 31 31 H 0.96694 * 114.00247 * 174.14447 * 11 10 9 32 32 H 0.96994 * 119.99617 * 354.85921 * 15 14 12 33 33 H 1.09002 * 113.76589 * 90.38278 * 20 8 6 34 34 H 1.09000 * 113.83818 * 318.91814 * 20 8 6 35 35 H 1.09002 * 109.47073 * 89.99805 * 22 21 4 36 36 H 1.09000 * 109.47456 * 209.99996 * 22 21 4 37 37 H 1.09005 * 109.46709 * 330.00408 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0108 6 6 4.8573 2.3987 -1.4336 7 8 4.3447 1.7952 -2.3522 8 7 5.7182 3.4047 -1.6853 9 6 6.2543 4.0245 -2.9125 10 6 6.4815 5.2814 -2.0532 11 8 5.3761 6.1871 -2.0550 12 6 7.8002 5.9634 -2.3123 13 1 8.3538 5.7438 -3.2131 14 6 8.2997 6.8677 -1.3992 15 7 9.2874 7.6672 -1.7384 16 14 7.5737 6.9573 0.3197 17 1 8.2809 8.0030 1.1018 18 1 6.1310 7.2974 0.2305 19 1 7.7318 5.6432 0.9930 20 6 6.5027 4.3312 -0.8420 21 6 3.9354 -0.4006 0.0021 22 6 5.3575 -0.8995 0.0048 23 16 2.4857 -1.4020 0.0074 24 1 -0.3633 -1.0276 0.0059 25 1 -0.3632 0.5189 0.8870 26 1 -0.3633 0.5087 -0.8929 27 1 5.4432 1.7249 0.5047 28 1 4.0906 2.8819 0.4986 29 1 5.5107 4.1580 -3.6983 30 1 7.1755 3.5648 -3.2706 31 1 5.4776 6.9327 -1.4477 32 1 9.7139 7.5706 -2.6041 33 1 7.4970 3.9616 -0.5910 34 1 5.9571 4.7090 0.0227 35 1 5.7003 -1.0143 1.0331 36 1 5.4058 -1.8623 -0.5039 37 1 5.9950 -0.1826 -0.5128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331794216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:32 Heat of formation + Delta-G solvation = -5.248475 kcal Electronic energy + Delta-G solvation = -21607.448179 eV Core-core repulsion = 18285.102441 eV Total energy + Delta-G solvation = -3322.345738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.33173 -39.44031 -37.47464 -34.21745 -33.87514 -32.64342 -30.67598 -30.20201 -28.27954 -25.86719 -25.23010 -24.57537 -22.83553 -20.16444 -19.04291 -18.54826 -18.00594 -17.87611 -16.72613 -15.85009 -15.47079 -15.10930 -14.87697 -14.68049 -13.99077 -13.65441 -13.56950 -13.46280 -13.42594 -13.08540 -12.81338 -12.62340 -12.36137 -12.31749 -12.15345 -11.99841 -11.68792 -11.25510 -11.15979 -10.80398 -10.44129 -10.02396 -9.63010 -9.54600 -9.43234 -9.22182 -9.04368 -8.60626 -8.48080 -8.02135 -6.75239 -4.49051 0.67290 1.27878 1.64791 2.68520 3.05355 3.07492 3.14458 3.27980 3.48483 4.01867 4.16003 4.74754 4.78062 4.90400 4.90623 4.95818 5.14147 5.21765 5.29157 5.34921 5.37456 5.48730 5.53304 5.64834 5.76474 5.86027 5.93769 6.00556 6.13432 6.21658 6.30521 6.43408 6.69695 7.53842 7.76409 8.06152 8.25859 8.55050 8.59603 8.70504 9.26678 10.61112 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003737 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.988456 B = 7491.401388 C = 7566.108014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.045 3.955 3 N -0.459 5.459 4 C 0.092 3.908 5 C -0.064 4.064 6 C 0.536 3.464 7 O -0.550 6.550 8 N -0.633 5.633 9 C 0.130 3.870 10 C 0.200 3.800 11 O -0.565 6.565 12 C -0.617 4.617 13 H 0.070 0.930 14 C 0.036 3.964 15 N -0.887 5.887 16 Si 1.040 2.960 17 H -0.278 1.278 18 H -0.279 1.279 19 H -0.273 1.273 20 C 0.055 3.945 21 C -0.211 4.211 22 C -0.075 4.075 23 S 0.104 5.896 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.106 0.894 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.367 0.633 32 H 0.274 0.726 33 H 0.096 0.904 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.497 -15.870 8.147 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.234 4.234 3 N -0.173 5.173 4 C -0.040 4.040 5 C -0.107 4.107 6 C 0.325 3.675 7 O -0.429 6.429 8 N -0.368 5.368 9 C 0.008 3.992 10 C 0.159 3.841 11 O -0.373 6.373 12 C -0.655 4.655 13 H 0.088 0.912 14 C -0.172 4.172 15 N -0.519 5.519 16 Si 0.867 3.133 17 H -0.204 1.204 18 H -0.206 1.206 19 H -0.198 1.198 20 C -0.068 4.068 21 C -0.331 4.331 22 C -0.134 4.134 23 S 0.359 5.641 24 H 0.096 0.904 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.124 0.876 28 H 0.126 0.874 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.530 -16.497 8.689 21.923 hybrid contribution 0.798 0.268 -1.043 1.340 sum -10.731 -16.229 7.646 20.905 Atomic orbital electron populations 1.20393 0.85263 1.03217 1.04448 1.26818 1.01497 0.90676 1.04363 1.65952 1.04451 1.31679 1.15232 1.19340 0.89654 0.92843 1.02142 1.20134 0.97730 0.96648 0.96176 1.19866 0.78928 0.78328 0.90396 1.90662 1.53005 1.52545 1.46706 1.50139 1.42400 1.32433 1.11810 1.23206 0.97309 0.89590 0.89063 1.20403 0.87055 0.86697 0.89981 1.86385 1.44688 1.39153 1.67120 1.22199 1.04380 1.29434 1.09513 0.91192 1.25837 0.96450 0.91200 1.03731 1.70806 1.23909 1.32217 1.25001 0.84151 0.75842 0.77392 0.75891 1.20355 1.20592 1.19835 1.24734 0.94708 0.89839 0.97479 1.25550 1.00213 0.95464 1.11897 1.20247 0.88738 1.01781 1.02651 1.83683 0.97825 1.12863 1.69761 0.90442 0.89517 0.89422 0.87573 0.87380 0.90912 0.89101 0.78375 0.91535 0.88596 0.91567 0.90470 0.90988 0.90240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.47 36.01 0.38 -0.27 16 2 C 0.04 0.59 7.39 -13.46 -0.10 0.49 16 3 N -0.46 -7.53 10.53 -8.06 -0.08 -7.62 16 4 C 0.09 1.47 5.23 -84.23 -0.44 1.03 16 5 C -0.06 -1.02 5.38 -29.03 -0.16 -1.17 16 6 C 0.54 10.63 8.05 -10.98 -0.09 10.54 16 7 O -0.55 -12.69 16.76 5.56 0.09 -12.60 16 8 N -0.63 -12.81 3.61 -178.11 -0.64 -13.45 16 9 C 0.13 2.78 8.23 -2.97 -0.02 2.75 16 10 C 0.20 4.53 1.07 -90.83 -0.10 4.43 16 11 O -0.57 -13.18 13.47 -35.23 -0.47 -13.65 16 12 C -0.62 -15.81 9.04 -34.44 -0.31 -16.12 16 13 H 0.07 1.93 8.06 -52.49 -0.42 1.51 16 14 C 0.04 0.93 5.44 -17.82 -0.10 0.83 16 15 N -0.89 -24.87 13.70 55.43 0.76 -24.11 16 16 Si 1.04 21.73 24.56 -169.99 -4.17 17.56 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -5.31 5.81 56.52 0.33 -4.98 16 19 H -0.27 -5.10 6.48 56.52 0.37 -4.74 16 20 C 0.06 1.09 5.39 -2.83 -0.02 1.07 16 21 C -0.21 -2.89 6.59 -35.92 -0.24 -3.13 16 22 C -0.07 -0.82 9.81 36.01 0.35 -0.46 16 23 S 0.10 1.20 23.17 -107.50 -2.49 -1.29 16 24 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 25 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.11 1.36 7.35 -51.93 -0.38 0.98 16 28 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 29 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 30 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 31 H 0.37 7.86 6.07 45.56 0.28 8.13 16 32 H 0.27 7.69 8.73 -40.82 -0.36 7.33 16 33 H 0.10 1.80 7.97 -51.93 -0.41 1.38 16 34 H 0.07 1.20 6.87 -51.93 -0.36 0.84 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.08 0.94 7.43 -51.93 -0.39 0.56 16 LS Contribution 324.83 15.07 4.90 4.90 Total: -1.00 -32.58 324.83 -7.28 -39.86 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -4.32 Total: 10.42 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -0.84 Total: -0.01 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.03 Total: -45.18 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -0.38 Total: -26.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.17 Total: 17.56 kcal Atomic # 16 Polarization: 1.20 SS G_CDS: -2.49 Total: -1.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.58 -7.28 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331794216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.612 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds