Wall clock time and date at job start Fri Apr 10 2020 17:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29025 * 124.91869 * 2 1 4 4 C 1.31780 * 117.12753 * 180.22917 * 3 2 1 5 5 C 1.50704 * 122.75159 * 179.75226 * 4 3 2 6 6 C 1.50703 * 109.46942 * 269.70771 * 5 4 3 7 7 O 1.21280 * 119.99782 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99919 * 179.97438 * 6 5 4 9 9 C 1.47572 * 134.49163 * 179.97438 * 8 6 5 10 10 C 1.53951 * 86.11583 * 155.36029 * 9 8 6 11 11 O 1.42897 * 113.74300 * 269.15347 * 10 9 8 12 12 C 1.50705 * 113.74111 * 137.95217 * 10 9 8 13 13 H 1.07995 * 119.99667 * 17.19322 * 12 10 9 14 14 C 1.37876 * 119.99899 * 197.19139 * 12 10 9 15 15 N 1.31516 * 119.99917 * 194.36987 * 14 12 10 16 16 Si 1.86802 * 120.00062 * 14.36608 * 14 12 10 17 17 H 1.48496 * 109.47125 * 180.02562 * 16 14 12 18 18 H 1.48497 * 109.47124 * 300.00105 * 16 14 12 19 19 H 1.48498 * 109.47140 * 60.00316 * 16 14 12 20 20 C 1.47814 * 134.45384 * 359.86683 * 8 6 5 21 21 C 1.33634 * 114.49881 * 359.48143 * 4 3 2 22 22 C 1.50701 * 126.04214 * 180.27103 * 21 4 3 23 23 S 1.70975 * 124.91662 * 179.69755 * 2 1 3 24 24 H 1.08997 * 109.47055 * 180.32711 * 1 2 3 25 25 H 1.08994 * 109.46667 * 300.33024 * 1 2 3 26 26 H 1.08998 * 109.46761 * 60.32818 * 1 2 3 27 27 H 1.08993 * 109.46770 * 149.70751 * 5 4 3 28 28 H 1.09003 * 109.47034 * 29.71025 * 5 4 3 29 29 H 1.09001 * 113.77187 * 41.06251 * 9 8 6 30 30 H 1.08998 * 113.77370 * 269.65834 * 9 8 6 31 31 H 0.96694 * 114.00247 * 174.14447 * 11 10 9 32 32 H 0.96994 * 119.99617 * 354.85921 * 15 14 12 33 33 H 1.09002 * 113.76589 * 90.38278 * 20 8 6 34 34 H 1.09000 * 113.83818 * 318.91814 * 20 8 6 35 35 H 1.09002 * 109.47073 * 89.99805 * 22 21 4 36 36 H 1.09000 * 109.47456 * 209.99996 * 22 21 4 37 37 H 1.09005 * 109.46709 * 330.00408 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5512 0.8793 -0.0047 5 6 4.5308 2.0245 -0.0108 6 6 4.8573 2.3987 -1.4336 7 8 4.3447 1.7952 -2.3522 8 7 5.7182 3.4047 -1.6853 9 6 6.2543 4.0245 -2.9125 10 6 6.4815 5.2814 -2.0532 11 8 5.3761 6.1871 -2.0550 12 6 7.8002 5.9634 -2.3123 13 1 8.3538 5.7438 -3.2131 14 6 8.2997 6.8677 -1.3992 15 7 9.2874 7.6672 -1.7384 16 14 7.5737 6.9573 0.3197 17 1 8.2809 8.0030 1.1018 18 1 6.1310 7.2974 0.2305 19 1 7.7318 5.6432 0.9930 20 6 6.5027 4.3312 -0.8420 21 6 3.9354 -0.4006 0.0021 22 6 5.3575 -0.8995 0.0048 23 16 2.4857 -1.4020 0.0074 24 1 -0.3633 -1.0276 0.0059 25 1 -0.3632 0.5189 0.8870 26 1 -0.3633 0.5087 -0.8929 27 1 5.4432 1.7249 0.5047 28 1 4.0906 2.8819 0.4986 29 1 5.5107 4.1580 -3.6983 30 1 7.1755 3.5648 -3.2706 31 1 5.4776 6.9327 -1.4477 32 1 9.7139 7.5706 -2.6041 33 1 7.4970 3.9616 -0.5910 34 1 5.9571 4.7090 0.0227 35 1 5.7003 -1.0143 1.0331 36 1 5.4058 -1.8623 -0.5039 37 1 5.9950 -0.1826 -0.5128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331794216.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:32 Heat of formation + Delta-G solvation = -30.778935 kcal Electronic energy + Delta-G solvation = -21608.555263 eV Core-core repulsion = 18285.102441 eV Total energy + Delta-G solvation = -3323.452821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64201 -40.82196 -39.08221 -35.99910 -34.84926 -34.64705 -31.85618 -31.17291 -29.81011 -27.44544 -26.75151 -25.88685 -23.84519 -21.87224 -20.39554 -19.93188 -19.74267 -18.94849 -18.24182 -17.53188 -17.00618 -16.54915 -16.02909 -15.93365 -15.49187 -15.21590 -14.77032 -14.60791 -14.35839 -14.27119 -14.22248 -13.88402 -13.86269 -13.62767 -13.19136 -13.06111 -12.92215 -12.83754 -12.44656 -12.16893 -12.10202 -11.75254 -11.33707 -11.08882 -10.89159 -10.61378 -10.34817 -10.15960 -9.72052 -9.55253 -8.82469 -6.59147 -0.28886 0.36836 0.68365 1.44401 1.49659 1.52183 1.55318 1.69609 2.02551 2.44916 2.91284 3.10783 3.28743 3.60870 3.74959 3.81382 3.97022 4.05846 4.29400 4.32149 4.36866 4.43967 4.54213 4.57413 4.63047 4.64539 4.64942 4.77557 4.86702 4.91713 4.99520 5.06509 5.23468 5.62527 5.91453 6.40599 6.69626 6.78509 6.95176 7.04917 7.27623 8.52707 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.028420 B = 0.003737 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.988456 B = 7491.401388 C = 7566.108014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.029 3.971 3 N -0.501 5.501 4 C 0.059 3.941 5 C -0.056 4.056 6 C 0.534 3.466 7 O -0.589 6.589 8 N -0.633 5.633 9 C 0.124 3.876 10 C 0.190 3.810 11 O -0.575 6.575 12 C -0.623 4.623 13 H 0.031 0.969 14 C -0.007 4.007 15 N -0.921 5.921 16 Si 1.069 2.931 17 H -0.289 1.289 18 H -0.248 1.248 19 H -0.228 1.228 20 C 0.069 3.931 21 C -0.222 4.222 22 C -0.076 4.076 23 S 0.155 5.845 24 H 0.104 0.896 25 H 0.097 0.903 26 H 0.084 0.916 27 H 0.137 0.863 28 H 0.115 0.885 29 H 0.058 0.942 30 H 0.098 0.902 31 H 0.374 0.626 32 H 0.257 0.743 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.914 -17.870 10.838 24.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.248 4.248 3 N -0.217 5.217 4 C -0.072 4.072 5 C -0.098 4.098 6 C 0.325 3.675 7 O -0.470 6.470 8 N -0.367 5.367 9 C 0.001 3.999 10 C 0.149 3.851 11 O -0.385 6.385 12 C -0.661 4.661 13 H 0.050 0.950 14 C -0.208 4.208 15 N -0.555 5.555 16 Si 0.888 3.112 17 H -0.215 1.215 18 H -0.173 1.173 19 H -0.151 1.151 20 C -0.053 4.053 21 C -0.343 4.343 22 C -0.135 4.135 23 S 0.411 5.589 24 H 0.123 0.877 25 H 0.116 0.884 26 H 0.103 0.897 27 H 0.155 0.845 28 H 0.133 0.867 29 H 0.077 0.923 30 H 0.116 0.884 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -12.957 -18.524 11.369 25.304 hybrid contribution 1.221 0.833 -2.029 2.510 sum -11.736 -17.692 9.339 23.194 Atomic orbital electron populations 1.20572 0.82855 1.05170 1.04765 1.27502 1.03180 0.90920 1.03228 1.65964 1.05068 1.33533 1.17098 1.19451 0.89845 0.93614 1.04330 1.20140 0.99312 0.97261 0.93054 1.20629 0.77665 0.77305 0.91897 1.90636 1.54178 1.53778 1.48400 1.50120 1.42659 1.32845 1.11098 1.23174 0.97418 0.89822 0.89468 1.20390 0.85256 0.86806 0.92672 1.86369 1.44520 1.39766 1.67827 1.22286 1.05581 1.30002 1.08197 0.95046 1.27361 0.95723 0.90144 1.07539 1.70957 1.25840 1.34297 1.24403 0.83899 0.76775 0.79445 0.71125 1.21533 1.17298 1.15139 1.24614 0.95847 0.88068 0.96744 1.26004 1.02252 0.95588 1.10502 1.20359 0.87012 1.01819 1.04296 1.83432 0.95975 1.11080 1.68460 0.87702 0.88430 0.89729 0.84497 0.86731 0.92314 0.88446 0.77501 0.93341 0.87188 0.88801 0.87874 0.89819 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.47 71.24 0.75 -0.40 16 2 C 0.03 0.72 7.39 88.52 0.65 1.37 16 3 N -0.50 -15.80 10.53 -179.40 -1.89 -17.69 16 4 C 0.06 1.77 5.23 41.52 0.22 1.99 16 5 C -0.06 -1.63 5.38 29.10 0.16 -1.47 16 6 C 0.53 20.43 8.05 87.66 0.71 21.14 16 7 O -0.59 -27.00 16.76 -3.03 -0.05 -27.05 16 8 N -0.63 -24.58 3.61 -839.65 -3.03 -27.61 16 9 C 0.12 5.29 8.23 86.49 0.71 6.00 16 10 C 0.19 8.43 1.07 -10.87 -0.01 8.41 16 11 O -0.58 -26.09 13.47 -148.98 -2.01 -28.10 16 12 C -0.62 -32.34 9.04 25.60 0.23 -32.11 16 13 H 0.03 1.82 8.06 -2.91 -0.02 1.79 16 14 C -0.01 -0.35 5.44 84.65 0.46 0.11 16 15 N -0.92 -52.93 13.70 21.45 0.29 -52.64 16 16 Si 1.07 41.10 24.56 68.60 1.68 42.79 16 17 H -0.29 -11.71 7.11 99.48 0.71 -11.00 16 18 H -0.25 -8.28 5.81 99.48 0.58 -7.71 16 19 H -0.23 -7.19 6.48 99.48 0.64 -6.55 16 20 C 0.07 2.51 5.39 86.45 0.47 2.98 16 21 C -0.22 -5.60 6.59 24.64 0.16 -5.43 16 22 C -0.08 -1.44 9.81 71.24 0.70 -0.74 16 23 S 0.16 3.19 23.17 -56.49 -1.31 1.89 16 24 H 0.10 1.00 8.12 -2.39 -0.02 0.99 16 25 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.14 3.03 7.35 -2.39 -0.02 3.02 16 28 H 0.11 3.17 8.14 -2.39 -0.02 3.15 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.10 3.96 8.09 -2.39 -0.02 3.94 16 31 H 0.37 15.24 6.07 -74.06 -0.45 14.79 16 32 H 0.26 15.15 8.73 -92.71 -0.81 14.34 16 33 H 0.11 3.71 7.97 -2.39 -0.02 3.69 16 34 H 0.09 2.92 6.87 -2.39 -0.02 2.91 16 35 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.07 1.45 7.43 -2.38 -0.02 1.44 16 Total: -1.00 -73.07 324.83 -0.69 -73.76 By element: Atomic # 1 Polarization: 32.39 SS G_CDS: 0.42 Total: 32.81 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: 5.20 Total: 1.85 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -4.63 Total: -97.94 kcal Atomic # 8 Polarization: -53.09 SS G_CDS: -2.06 Total: -55.15 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 1.68 Total: 42.79 kcal Atomic # 16 Polarization: 3.19 SS G_CDS: -1.31 Total: 1.89 kcal Total: -73.07 -0.69 -73.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331794216.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.984 kcal (2) G-P(sol) polarization free energy of solvation -73.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds