Wall clock time and date at job start Fri Apr 10 2020 17:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00312 * 2 1 4 4 H 1.48493 * 109.47366 * 270.00677 * 3 2 1 5 5 H 1.48510 * 109.46691 * 30.00325 * 3 2 1 6 6 H 1.48497 * 109.47316 * 149.99795 * 3 2 1 7 7 C 1.38807 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99962 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00112 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47362 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99919 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00310 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64718 * 4.89253 * 13 11 10 15 15 C 1.54910 * 104.83525 * 204.16194 * 14 13 11 16 16 C 1.55401 * 101.66336 * 323.07823 * 15 14 13 17 17 C 1.47025 * 125.65053 * 184.93220 * 13 11 10 18 18 H 1.08996 * 109.87905 * 59.33719 * 17 13 11 19 19 C 1.52998 * 109.88272 * 298.32137 * 17 13 11 20 20 N 1.46499 * 109.46935 * 175.88955 * 19 17 13 21 21 C 1.35317 * 125.86529 * 124.46607 * 20 19 17 22 22 C 1.35350 * 106.17020 * 179.76898 * 21 20 19 23 23 N 1.33769 * 106.50331 * 0.23117 * 22 21 20 24 24 N 1.28635 * 108.88069 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47282 * 59.99827 * 10 9 7 27 27 H 1.09002 * 109.47015 * 299.99798 * 10 9 7 28 28 H 1.08998 * 110.37019 * 323.00377 * 14 13 11 29 29 H 1.08999 * 110.36726 * 85.32252 * 14 13 11 30 30 H 1.08998 * 111.00272 * 81.06211 * 15 14 13 31 31 H 1.08997 * 111.00607 * 204.87710 * 15 14 13 32 32 H 1.09000 * 110.69485 * 277.04450 * 16 15 14 33 33 H 1.09002 * 110.85122 * 153.70134 * 16 15 14 34 34 H 1.09002 * 109.46928 * 55.89331 * 19 17 13 35 35 H 1.08996 * 109.47455 * 295.89308 * 19 17 13 36 36 H 1.08000 * 126.91105 * 0.03436 * 21 20 19 37 37 H 1.08002 * 126.74332 * 180.24148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 4.3117 -6.2476 0.1008 15 6 4.8398 -7.5502 -0.5505 16 6 3.7749 -8.5849 -0.0917 17 6 2.4698 -7.7613 -0.1025 18 1 1.9290 -7.9358 -1.0326 19 6 1.5956 -8.1559 1.0895 20 7 1.1474 -9.5414 0.9288 21 6 1.3296 -10.5421 1.8212 22 6 0.7585 -11.6417 1.2764 23 7 0.2660 -11.2661 0.0907 24 7 0.5151 -10.0166 -0.0866 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 4.6738 -5.3766 -0.4454 29 1 4.6174 -6.1950 1.1457 30 1 4.8561 -7.4650 -1.6370 31 1 5.8268 -7.8070 -0.1660 32 1 3.9954 -8.9449 0.9132 33 1 3.7127 -9.4154 -0.7950 34 1 0.7287 -7.4970 1.1382 35 1 2.1731 -8.0652 2.0094 36 1 1.8265 -10.4757 2.7778 37 1 0.7099 -12.6282 1.7131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332639761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:38 Heat of formation + Delta-G solvation = 70.430311 kcal Electronic energy + Delta-G solvation = -21167.193393 eV Core-core repulsion = 17880.422085 eV Total energy + Delta-G solvation = -3286.771308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.37267 -40.20147 -37.48458 -34.91583 -32.48265 -31.97403 -31.18209 -30.67114 -28.76081 -26.46220 -25.54744 -23.38102 -22.81324 -22.03459 -21.14515 -19.19257 -17.95796 -17.77004 -16.88193 -16.60727 -16.00109 -15.19741 -15.01891 -14.85241 -14.65723 -14.46466 -14.05003 -13.95842 -13.48811 -13.14163 -12.89658 -12.62348 -12.42684 -11.99190 -11.76097 -11.59435 -11.54767 -11.19055 -11.10638 -11.07638 -11.00736 -10.81046 -10.23955 -9.87614 -9.56364 -9.53509 -9.11690 -8.77873 -8.30782 -6.57097 -6.26719 -3.98304 1.47515 2.06453 2.46429 2.79228 2.88036 3.18847 3.21549 3.26566 3.50788 4.01985 4.08883 4.15816 4.29551 4.34787 4.58215 4.68937 4.84464 4.92434 4.95068 5.05602 5.08607 5.13640 5.29167 5.36067 5.44967 5.47760 5.52840 5.58738 5.68561 5.80345 5.83948 6.00329 6.03398 6.15562 6.43563 7.43609 7.54468 8.29779 8.34809 8.40391 9.18544 10.80662 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029304 B = 0.003225 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.285602 B = 8678.941933 C = 9384.878376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.508 6.508 13 N -0.621 5.621 14 C 0.100 3.900 15 C -0.131 4.131 16 C -0.128 4.128 17 C 0.131 3.869 18 H 0.094 0.906 19 C 0.100 3.900 20 N -0.279 5.279 21 C -0.053 4.053 22 C -0.055 4.055 23 N -0.276 5.276 24 N -0.077 5.077 25 H 0.269 0.731 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.106 0.894 36 H 0.188 0.812 37 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.909 -19.148 4.561 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.168 5.832 10 C -0.298 4.298 11 C 0.338 3.662 12 O -0.382 6.382 13 N -0.360 5.360 14 C -0.023 4.023 15 C -0.169 4.169 16 C -0.166 4.166 17 C 0.026 3.974 18 H 0.112 0.888 19 C -0.022 4.022 20 N -0.073 5.073 21 C -0.205 4.205 22 C -0.213 4.213 23 N -0.142 5.142 24 N -0.058 5.058 25 H 0.079 0.921 26 H 0.108 0.892 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.138 0.862 35 H 0.124 0.876 36 H 0.205 0.795 37 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 9.283 -18.890 3.178 21.286 hybrid contribution 2.519 1.144 1.266 3.043 sum 11.802 -17.746 4.445 21.770 Atomic orbital electron populations 1.70011 1.05966 1.27555 1.46640 1.24999 0.95034 0.99062 0.94460 0.86160 0.79384 0.81512 0.78396 1.20228 1.20722 1.19686 1.22840 0.94872 0.91523 1.59226 0.90896 1.85440 1.04653 0.96390 1.96736 1.23519 1.06700 0.94569 1.04966 1.20187 0.85688 0.85516 0.74833 1.90724 1.14895 1.84946 1.47596 1.48591 1.07355 1.04374 1.75639 1.22359 0.79750 0.99168 1.01043 1.22823 0.98545 0.93875 1.01648 1.22770 0.93385 0.97911 1.02553 1.21678 0.95675 0.82153 0.97940 0.88834 1.22699 1.02093 0.76732 1.00708 1.47441 1.36234 1.10775 1.12896 1.23698 1.08613 0.88452 0.99691 1.23603 1.03020 1.00525 0.94155 1.75152 1.19144 1.03375 1.16541 1.78394 1.11903 1.05262 1.10199 0.92108 0.89162 0.89057 0.89712 0.91083 0.90184 0.89526 0.90575 0.89926 0.86202 0.87560 0.79476 0.79522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.78 13.22 55.49 0.73 -25.05 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.01 29.55 -169.99 -5.02 15.99 16 4 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.91 9.50 30.94 0.29 -14.62 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.83 5.09 36.01 0.18 -2.65 16 11 C 0.55 9.74 7.68 -10.99 -0.08 9.66 16 12 O -0.51 -10.96 14.67 5.56 0.08 -10.88 16 13 N -0.62 -7.94 3.06 -163.02 -0.50 -8.44 16 14 C 0.10 0.89 6.74 -2.53 -0.02 0.88 16 15 C -0.13 -0.90 7.09 -24.45 -0.17 -1.07 16 16 C -0.13 -1.00 6.28 -24.76 -0.16 -1.15 16 17 C 0.13 1.47 2.98 -66.95 -0.20 1.27 16 18 H 0.09 1.29 8.02 -51.93 -0.42 0.87 16 19 C 0.10 1.09 5.84 -4.04 -0.02 1.07 16 20 N -0.28 -3.19 3.21 -61.26 -0.20 -3.39 16 21 C -0.05 -0.46 11.57 -17.04 -0.20 -0.65 16 22 C -0.06 -0.54 12.05 -17.74 -0.21 -0.76 16 23 N -0.28 -3.87 12.41 30.23 0.38 -3.49 16 24 N -0.08 -1.13 12.85 60.35 0.78 -0.36 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.09 1.58 8.14 -51.92 -0.42 1.16 16 27 H 0.09 1.64 7.95 -51.91 -0.41 1.23 16 28 H 0.08 0.76 7.47 -51.93 -0.39 0.37 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.48 7.78 -51.93 -0.40 0.07 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.12 1.70 6.58 -51.93 -0.34 1.36 16 35 H 0.11 0.85 7.97 -51.93 -0.41 0.43 16 36 H 0.19 0.82 8.06 -52.49 -0.42 0.39 16 37 H 0.19 1.14 8.06 -52.49 -0.42 0.71 16 LS Contribution 329.91 15.07 4.97 4.97 Total: -1.00 -35.55 329.91 -6.56 -42.11 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: -4.88 Total: -1.65 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -0.68 Total: -6.05 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 1.19 Total: -40.73 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.08 Total: -10.88 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.55 -6.56 -42.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332639761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.543 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds