Wall clock time and date at job start Fri Apr 10 2020 17:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00312 * 2 1 4 4 H 1.48493 * 109.47366 * 270.00677 * 3 2 1 5 5 H 1.48510 * 109.46691 * 30.00325 * 3 2 1 6 6 H 1.48497 * 109.47316 * 149.99795 * 3 2 1 7 7 C 1.38807 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99962 * 179.97438 * 7 2 1 9 9 S 1.76192 * 119.99948 * 359.97438 * 7 2 1 10 10 C 1.80995 * 100.00112 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47362 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99919 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00310 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64718 * 4.89253 * 13 11 10 15 15 C 1.54910 * 104.83525 * 204.16194 * 14 13 11 16 16 C 1.55401 * 101.66336 * 323.07823 * 15 14 13 17 17 C 1.47025 * 125.65053 * 184.93220 * 13 11 10 18 18 H 1.08996 * 109.87905 * 59.33719 * 17 13 11 19 19 C 1.52998 * 109.88272 * 298.32137 * 17 13 11 20 20 N 1.46499 * 109.46935 * 175.88955 * 19 17 13 21 21 C 1.35317 * 125.86529 * 124.46607 * 20 19 17 22 22 C 1.35350 * 106.17020 * 179.76898 * 21 20 19 23 23 N 1.33769 * 106.50331 * 0.23117 * 22 21 20 24 24 N 1.28635 * 108.88069 * 359.97438 * 23 22 21 25 25 H 0.97000 * 120.00096 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47282 * 59.99827 * 10 9 7 27 27 H 1.09002 * 109.47015 * 299.99798 * 10 9 7 28 28 H 1.08998 * 110.37019 * 323.00377 * 14 13 11 29 29 H 1.08999 * 110.36726 * 85.32252 * 14 13 11 30 30 H 1.08998 * 111.00272 * 81.06211 * 15 14 13 31 31 H 1.08997 * 111.00607 * 204.87710 * 15 14 13 32 32 H 1.09000 * 110.69485 * 277.04450 * 16 15 14 33 33 H 1.09002 * 110.85122 * 153.70134 * 16 15 14 34 34 H 1.09002 * 109.46928 * 55.89331 * 19 17 13 35 35 H 1.08996 * 109.47455 * 295.89308 * 19 17 13 36 36 H 1.08000 * 126.91105 * 0.03436 * 21 20 19 37 37 H 1.08002 * 126.74332 * 180.24148 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6527 0.7002 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3027 0.0001 12 8 0.7911 -5.5023 0.0000 13 7 2.8441 -6.3431 -0.0003 14 6 4.3117 -6.2476 0.1008 15 6 4.8398 -7.5502 -0.5505 16 6 3.7749 -8.5849 -0.0917 17 6 2.4698 -7.7613 -0.1025 18 1 1.9290 -7.9358 -1.0326 19 6 1.5956 -8.1559 1.0895 20 7 1.1474 -9.5414 0.9288 21 6 1.3296 -10.5421 1.8212 22 6 0.7585 -11.6417 1.2764 23 7 0.2660 -11.2661 0.0907 24 7 0.5151 -10.0166 -0.0866 25 1 -0.4850 0.8400 0.0004 26 1 3.1245 -3.7314 0.8894 27 1 3.1244 -3.7314 -0.8906 28 1 4.6738 -5.3766 -0.4454 29 1 4.6174 -6.1950 1.1457 30 1 4.8561 -7.4650 -1.6370 31 1 5.8268 -7.8070 -0.1660 32 1 3.9954 -8.9449 0.9132 33 1 3.7127 -9.4154 -0.7950 34 1 0.7287 -7.4970 1.1382 35 1 2.1731 -8.0652 2.0094 36 1 1.8265 -10.4757 2.7778 37 1 0.7099 -12.6282 1.7131 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332639761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:38 Heat of formation + Delta-G solvation = 45.057174 kcal Electronic energy + Delta-G solvation = -21168.293655 eV Core-core repulsion = 17880.422085 eV Total energy + Delta-G solvation = -3287.871570 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -44.21059 -41.30618 -38.67519 -35.79527 -34.59659 -33.05952 -31.97716 -31.53802 -30.10576 -27.67671 -27.26393 -24.37621 -23.60374 -22.81891 -21.99079 -20.45846 -19.53627 -18.78106 -18.17766 -17.47900 -16.99370 -16.88292 -16.47058 -16.05816 -15.82839 -15.47293 -15.20952 -14.92761 -14.60095 -14.27323 -14.08134 -13.76502 -13.59228 -13.21353 -13.10441 -12.89995 -12.63386 -12.56604 -12.35885 -12.22999 -11.92109 -11.75372 -11.71684 -11.17476 -11.15223 -10.95960 -10.32711 -10.28900 -9.85563 -8.69315 -8.35663 -6.14362 0.67748 1.11074 1.32319 1.42304 1.44576 1.51026 1.58037 1.66073 2.08843 2.26254 2.98866 3.17604 3.27160 3.38881 3.58080 3.65911 3.81337 3.87604 4.07055 4.14786 4.24334 4.28636 4.34105 4.39832 4.44675 4.51610 4.73078 4.78385 4.84713 4.91735 5.04331 5.19848 5.25840 5.32637 5.40944 5.63624 6.18683 6.27994 7.01960 7.05737 7.55061 8.73499 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029304 B = 0.003225 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.285602 B = 8678.941933 C = 9384.878376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.085 0.915 9 S -0.153 6.153 10 C -0.119 4.119 11 C 0.548 3.452 12 O -0.559 6.559 13 N -0.610 5.610 14 C 0.088 3.912 15 C -0.120 4.120 16 C -0.116 4.116 17 C 0.128 3.872 18 H 0.057 0.943 19 C 0.105 3.895 20 N -0.282 5.282 21 C -0.031 4.031 22 C -0.063 4.063 23 N -0.313 5.313 24 N -0.135 5.135 25 H 0.271 0.729 26 H 0.113 0.887 27 H 0.106 0.894 28 H 0.086 0.914 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.105 0.895 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.146 0.854 36 H 0.238 0.762 37 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.853 -20.090 6.367 26.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.179 1.179 7 C -0.692 4.692 8 H 0.103 0.897 9 S 0.074 5.926 10 C -0.270 4.270 11 C 0.336 3.664 12 O -0.437 6.437 13 N -0.345 5.345 14 C -0.033 4.033 15 C -0.157 4.157 16 C -0.153 4.153 17 C 0.023 3.977 18 H 0.075 0.925 19 C -0.017 4.017 20 N -0.076 5.076 21 C -0.182 4.182 22 C -0.221 4.221 23 N -0.178 5.178 24 N -0.114 5.114 25 H 0.080 0.920 26 H 0.132 0.868 27 H 0.124 0.876 28 H 0.104 0.896 29 H 0.117 0.883 30 H 0.091 0.909 31 H 0.140 0.860 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.254 0.746 37 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 13.278 -19.870 4.961 24.408 hybrid contribution 1.344 1.251 0.746 1.982 sum 14.623 -18.619 5.707 24.353 Atomic orbital electron populations 1.70185 1.08042 1.28622 1.48010 1.26145 0.95946 1.03386 0.93737 0.84945 0.78288 0.75951 0.78750 1.19458 1.20426 1.17885 1.23185 0.95359 0.91779 1.58853 0.89712 1.85653 1.10506 0.99387 1.97052 1.23307 1.03449 0.93548 1.06699 1.19886 0.85438 0.86016 0.75043 1.90715 1.17120 1.85589 1.50294 1.48468 1.08795 1.04029 1.73256 1.22782 0.76790 1.00594 1.03130 1.22834 0.99662 0.91998 1.01256 1.22748 0.91124 0.97234 1.04230 1.21753 0.97624 0.81594 0.96683 0.92486 1.22608 1.00799 0.76163 1.02111 1.47490 1.35884 1.11183 1.12997 1.24507 1.06704 0.86804 1.00210 1.24303 1.02345 1.02493 0.92983 1.75088 1.20267 1.03528 1.18915 1.78391 1.14675 1.05950 1.12378 0.92020 0.86843 0.87552 0.89552 0.88314 0.90927 0.86025 0.87699 0.90307 0.90229 0.83575 0.74556 0.76187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.78 13.22 21.65 0.29 -55.49 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 42.89 29.55 68.60 2.03 44.91 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 7 C -0.54 -30.47 9.50 67.96 0.65 -29.82 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.39 20.57 -56.49 -1.16 -9.55 16 10 C -0.12 -4.56 5.09 71.24 0.36 -4.19 16 11 C 0.55 19.73 7.68 87.66 0.67 20.41 16 12 O -0.56 -25.60 14.67 -3.03 -0.04 -25.64 16 13 N -0.61 -14.90 3.06 -788.06 -2.42 -17.32 16 14 C 0.09 1.27 6.74 86.86 0.59 1.85 16 15 C -0.12 -1.17 7.09 32.07 0.23 -0.95 16 16 C -0.12 -1.43 6.28 31.87 0.20 -1.23 16 17 C 0.13 2.81 2.98 45.34 0.14 2.94 16 18 H 0.06 1.67 8.02 -2.39 -0.02 1.65 16 19 C 0.11 2.22 5.84 86.38 0.50 2.73 16 20 N -0.28 -6.17 3.21 -347.74 -1.12 -7.29 16 21 C -0.03 -0.43 11.57 83.49 0.97 0.54 16 22 C -0.06 -1.10 12.05 83.73 1.01 -0.09 16 23 N -0.31 -8.82 12.41 -58.26 -0.72 -9.54 16 24 N -0.13 -4.08 12.85 37.02 0.48 -3.60 16 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 26 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 27 H 0.11 3.73 7.95 -2.39 -0.02 3.71 16 28 H 0.09 1.26 7.47 -2.39 -0.02 1.25 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.10 0.75 7.78 -2.39 -0.02 0.73 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 2.39 6.58 -2.39 -0.02 2.37 16 35 H 0.15 1.82 7.97 -2.39 -0.02 1.80 16 36 H 0.24 0.68 8.06 -2.91 -0.02 0.66 16 37 H 0.22 1.99 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -85.07 329.91 4.18 -80.89 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: 1.07 Total: 9.29 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.78 Total: -6.64 kcal Atomic # 7 Polarization: -89.76 SS G_CDS: -3.49 Total: -93.25 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.04 Total: -25.64 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Atomic # 16 Polarization: -8.39 SS G_CDS: -1.16 Total: -9.55 kcal Total: -85.07 4.18 -80.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332639761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.950 kcal (2) G-P(sol) polarization free energy of solvation -85.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds