Wall clock time and date at job start Fri Apr 10 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 122.45227 * 2 1 4 4 S 1.70609 * 110.95496 * 180.02562 * 3 2 1 5 5 C 1.75833 * 91.56432 * 0.02562 * 4 3 2 6 6 C 1.46588 * 125.45856 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99931 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99989 * 359.75364 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27576 * 8 6 5 10 10 H 1.09005 * 110.88441 * 34.29146 * 9 8 6 11 11 C 1.54914 * 111.00228 * 270.41799 * 9 8 6 12 12 N 1.47469 * 104.80943 * 204.94798 * 11 9 8 13 13 C 1.36926 * 125.62749 * 204.06831 * 12 11 9 14 14 H 1.08001 * 120.00320 * 359.97403 * 13 12 11 15 15 C 1.38813 * 120.00115 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99677 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00256 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46756 * 60.00141 * 17 15 13 19 19 H 1.48494 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47155 * 300.00466 * 17 15 13 21 21 C 1.47022 * 108.72020 * 24.06761 * 12 11 9 22 22 C 1.54320 * 107.27451 * 358.97403 * 21 12 11 23 23 H 1.08997 * 110.71968 * 219.44038 * 22 21 12 24 24 O 1.42909 * 110.87144 * 96.24268 * 22 21 12 25 25 C 1.36647 * 109.08400 * 0.26372 * 5 4 3 26 26 H 1.08999 * 109.47381 * 89.96837 * 1 2 3 27 27 H 1.08996 * 109.47462 * 209.97492 * 1 2 3 28 28 H 1.09005 * 109.46968 * 329.97137 * 1 2 3 29 29 H 1.07994 * 124.51992 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99736 * 0.26848 * 8 6 5 31 31 H 1.08997 * 110.36311 * 323.75141 * 11 9 8 32 32 H 1.08998 * 110.36747 * 86.07230 * 11 9 8 33 33 H 0.97003 * 119.99405 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.88163 * 239.55605 * 21 12 11 35 35 H 1.09005 * 110.00875 * 118.46883 * 21 12 11 36 36 H 0.96695 * 113.99796 * 66.38627 * 24 22 21 37 37 H 1.07995 * 123.35189 * 179.70130 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8969 0.7892 -0.0007 5 6 3.5936 -0.9428 -0.0018 6 6 4.6231 -1.9864 -0.0033 7 8 4.3000 -3.1598 -0.0045 8 7 5.9272 -1.6465 -0.0091 9 6 6.9561 -2.6894 -0.0167 10 1 6.6271 -3.5556 -0.5909 11 6 7.3457 -3.0955 1.4266 12 7 8.7162 -3.6277 1.3114 13 6 9.3047 -4.5099 2.1777 14 1 8.7557 -4.8741 3.0334 15 6 10.6070 -4.9361 1.9560 16 7 11.2763 -4.4918 0.9134 17 14 11.4102 -6.1391 3.1381 18 1 10.6223 -7.3973 3.1751 19 1 12.7924 -6.4332 2.6819 20 1 11.4543 -5.5426 4.4973 21 6 9.3458 -3.0544 0.1129 22 6 8.3011 -2.1398 -0.5606 23 1 8.3467 -2.2359 -1.6453 24 8 8.4872 -0.7786 -0.1672 25 6 2.2446 -1.1601 -0.0075 26 1 -0.3634 0.0006 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 1.8026 2.1231 0.0004 30 1 6.1847 -0.7113 -0.0082 31 1 7.3309 -2.2252 2.0826 32 1 6.6695 -3.8646 1.7999 33 1 12.1865 -4.7894 0.7587 34 1 9.6360 -3.8521 -0.5709 35 1 10.2224 -2.4711 0.3950 36 1 9.3137 -0.3877 -0.4820 37 1 1.8019 -2.1452 -0.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083446371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:05 Heat of formation + Delta-G solvation = -23.985172 kcal Electronic energy + Delta-G solvation = -21338.100434 eV Core-core repulsion = 18014.942212 eV Total energy + Delta-G solvation = -3323.158222 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.79148 -38.45518 -37.58348 -34.85240 -33.98453 -31.82971 -31.02258 -28.60491 -27.99890 -27.09954 -24.92524 -23.81804 -20.90389 -20.43330 -20.01521 -19.07334 -18.42271 -17.22361 -16.81854 -16.05983 -15.49922 -14.92459 -14.86710 -14.56521 -14.07178 -13.90829 -13.73064 -13.34964 -13.15226 -12.78064 -12.64985 -12.36192 -12.31634 -12.14434 -12.07380 -11.29930 -11.05430 -10.96460 -10.83052 -10.52113 -10.47753 -10.16385 -9.88564 -9.80431 -9.33338 -9.03219 -8.73534 -8.64729 -8.54424 -6.87438 -5.74469 -3.07381 0.40905 1.35092 1.75602 2.23049 3.25062 3.31297 3.41785 3.45382 3.47141 4.47266 4.54086 4.73325 4.80251 5.04657 5.10981 5.27597 5.35038 5.36363 5.36803 5.53569 5.65757 5.70177 5.76825 5.85598 6.04879 6.14505 6.20408 6.22633 6.55556 6.66515 6.91832 7.32585 7.44144 7.69796 7.75399 8.05775 8.19887 8.35830 9.18295 9.78250 10.42770 11.37821 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.003360 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.141166 B = 8331.032300 C = 8815.384339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.117 4.117 3 C -0.242 4.242 4 S 0.205 5.795 5 C -0.253 4.253 6 C 0.584 3.416 7 O -0.531 6.531 8 N -0.703 5.703 9 C 0.139 3.861 10 H 0.106 0.894 11 C 0.131 3.869 12 N -0.600 5.600 13 C -0.225 4.225 14 H 0.079 0.921 15 C -0.009 4.009 16 N -0.927 5.927 17 Si 0.915 3.085 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.155 3.845 22 C 0.068 3.932 23 H 0.062 0.938 24 O -0.568 6.568 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.167 0.833 30 H 0.404 0.596 31 H 0.026 0.974 32 H 0.046 0.954 33 H 0.253 0.747 34 H 0.056 0.944 35 H 0.054 0.946 36 H 0.380 0.620 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.176 13.688 -5.340 21.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.131 4.131 3 C -0.380 4.380 4 S 0.474 5.526 5 C -0.374 4.374 6 C 0.369 3.631 7 O -0.409 6.409 8 N -0.353 5.353 9 C 0.034 3.966 10 H 0.124 0.876 11 C 0.004 3.996 12 N -0.327 5.327 13 C -0.353 4.353 14 H 0.097 0.903 15 C -0.205 4.205 16 N -0.575 5.575 17 Si 0.746 3.254 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.029 3.971 22 C 0.008 3.992 23 H 0.080 0.920 24 O -0.374 6.374 25 C -0.092 4.092 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.184 0.816 30 H 0.240 0.760 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.228 0.772 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.397 13.549 -5.036 21.119 hybrid contribution -0.139 -0.848 0.340 0.925 sum -15.536 12.701 -4.696 20.609 Atomic orbital electron populations 1.20505 0.89488 1.02850 1.02350 1.18778 0.97884 0.91553 1.04873 1.25135 0.98802 1.03251 1.10810 1.83134 1.03550 0.98375 1.67547 1.24715 0.98081 0.97238 1.17345 1.16994 0.81866 0.87376 0.76845 1.90838 1.81645 1.18084 1.50382 1.45657 1.04671 1.10939 1.74082 1.22407 0.84661 0.90052 0.99514 0.87581 1.21847 0.87928 0.96868 0.92978 1.44272 1.09157 1.51585 1.27687 1.19055 0.95788 1.17018 1.03441 0.90288 1.24791 0.96780 1.00557 0.98368 1.69902 1.11270 1.47521 1.28825 0.86140 0.78379 0.80828 0.80089 1.21073 1.21591 1.21154 1.21856 0.92054 0.94487 0.88659 1.23519 0.95993 0.82639 0.97071 0.92004 1.86246 1.44862 1.26174 1.80161 1.20657 0.91008 0.99972 0.97609 0.91205 0.91257 0.91585 0.81595 0.75980 0.95584 0.93600 0.93671 0.92577 0.92820 0.77192 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.13 36.01 0.36 -0.29 16 2 C -0.12 -1.16 5.78 -106.45 -0.62 -1.77 16 3 C -0.24 -2.19 10.67 29.18 0.31 -1.87 16 4 S 0.21 2.11 22.16 -107.50 -2.38 -0.27 16 5 C -0.25 -3.44 6.45 -36.79 -0.24 -3.68 16 6 C 0.58 9.87 7.78 -12.89 -0.10 9.77 16 7 O -0.53 -10.74 16.53 5.19 0.09 -10.66 16 8 N -0.70 -11.56 5.17 -53.06 -0.27 -11.83 16 9 C 0.14 2.66 3.25 -65.78 -0.21 2.44 16 10 H 0.11 2.13 7.63 -51.93 -0.40 1.74 16 11 C 0.13 2.95 6.93 -2.50 -0.02 2.93 16 12 N -0.60 -15.62 3.40 -170.04 -0.58 -16.20 16 13 C -0.22 -6.39 10.28 -15.06 -0.15 -6.54 16 14 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.93 -26.88 10.31 55.49 0.57 -26.31 16 17 Si 0.92 22.30 29.55 -169.99 -5.02 17.27 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 C 0.15 3.64 5.14 -3.07 -0.02 3.63 16 22 C 0.07 1.23 4.19 -24.90 -0.10 1.12 16 23 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 24 O -0.57 -9.09 12.14 -35.23 -0.43 -9.52 16 25 C -0.06 -0.72 9.80 -40.43 -0.40 -1.12 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 28 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 29 H 0.17 1.06 8.06 -52.49 -0.42 0.64 16 30 H 0.40 5.98 6.68 -40.82 -0.27 5.71 16 31 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 34 H 0.06 1.45 7.38 -51.93 -0.38 1.06 16 35 H 0.05 1.37 7.44 -51.93 -0.39 0.99 16 36 H 0.38 4.64 9.12 45.56 0.42 5.06 16 37 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 325.79 15.07 4.91 4.91 Total: -1.00 -33.02 325.79 -8.34 -41.36 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -3.95 Total: 6.97 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -1.27 Total: 4.27 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.28 Total: -54.34 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.34 Total: -20.17 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 16 Polarization: 2.11 SS G_CDS: -2.38 Total: -0.27 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.02 -8.34 -41.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083446371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.378 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds