Wall clock time and date at job start Fri Apr 10 2020 17:40:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 122.45227 * 2 1 4 4 S 1.70609 * 110.95496 * 180.02562 * 3 2 1 5 5 C 1.75833 * 91.56432 * 0.02562 * 4 3 2 6 6 C 1.46588 * 125.45856 * 179.97438 * 5 4 3 7 7 O 1.21703 * 119.99931 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99989 * 359.75364 * 6 5 4 9 9 C 1.46499 * 120.00195 * 180.27576 * 8 6 5 10 10 H 1.09005 * 110.88441 * 34.29146 * 9 8 6 11 11 C 1.54914 * 111.00228 * 270.41799 * 9 8 6 12 12 N 1.47469 * 104.80943 * 204.94798 * 11 9 8 13 13 C 1.36926 * 125.62749 * 204.06831 * 12 11 9 14 14 H 1.08001 * 120.00320 * 359.97403 * 13 12 11 15 15 C 1.38813 * 120.00115 * 179.97438 * 13 12 11 16 16 N 1.31620 * 119.99677 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00256 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46756 * 60.00141 * 17 15 13 19 19 H 1.48494 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47155 * 300.00466 * 17 15 13 21 21 C 1.47022 * 108.72020 * 24.06761 * 12 11 9 22 22 C 1.54320 * 107.27451 * 358.97403 * 21 12 11 23 23 H 1.08997 * 110.71968 * 219.44038 * 22 21 12 24 24 O 1.42909 * 110.87144 * 96.24268 * 22 21 12 25 25 C 1.36647 * 109.08400 * 0.26372 * 5 4 3 26 26 H 1.08999 * 109.47381 * 89.96837 * 1 2 3 27 27 H 1.08996 * 109.47462 * 209.97492 * 1 2 3 28 28 H 1.09005 * 109.46968 * 329.97137 * 1 2 3 29 29 H 1.07994 * 124.51992 * 0.02562 * 3 2 1 30 30 H 0.97000 * 119.99736 * 0.26848 * 8 6 5 31 31 H 1.08997 * 110.36311 * 323.75141 * 11 9 8 32 32 H 1.08998 * 110.36747 * 86.07230 * 11 9 8 33 33 H 0.97003 * 119.99405 * 179.97438 * 16 15 13 34 34 H 1.09001 * 109.88163 * 239.55605 * 21 12 11 35 35 H 1.09005 * 110.00875 * 118.46883 * 21 12 11 36 36 H 0.96695 * 113.99796 * 66.38627 * 24 22 21 37 37 H 1.07995 * 123.35189 * 179.70130 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8969 0.7892 -0.0007 5 6 3.5936 -0.9428 -0.0018 6 6 4.6231 -1.9864 -0.0033 7 8 4.3000 -3.1598 -0.0045 8 7 5.9272 -1.6465 -0.0091 9 6 6.9561 -2.6894 -0.0167 10 1 6.6271 -3.5556 -0.5909 11 6 7.3457 -3.0955 1.4266 12 7 8.7162 -3.6277 1.3114 13 6 9.3047 -4.5099 2.1777 14 1 8.7557 -4.8741 3.0334 15 6 10.6070 -4.9361 1.9560 16 7 11.2763 -4.4918 0.9134 17 14 11.4102 -6.1391 3.1381 18 1 10.6223 -7.3973 3.1751 19 1 12.7924 -6.4332 2.6819 20 1 11.4543 -5.5426 4.4973 21 6 9.3458 -3.0544 0.1129 22 6 8.3011 -2.1398 -0.5606 23 1 8.3467 -2.2359 -1.6453 24 8 8.4872 -0.7786 -0.1672 25 6 2.2446 -1.1601 -0.0075 26 1 -0.3634 0.0006 -1.0276 27 1 -0.3634 -0.8902 0.5134 28 1 -0.3633 0.8898 0.5143 29 1 1.8026 2.1231 0.0004 30 1 6.1847 -0.7113 -0.0082 31 1 7.3309 -2.2252 2.0826 32 1 6.6695 -3.8646 1.7999 33 1 12.1865 -4.7894 0.7587 34 1 9.6360 -3.8521 -0.5709 35 1 10.2224 -2.4711 0.3950 36 1 9.3137 -0.3877 -0.4820 37 1 1.8019 -2.1452 -0.0140 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083446371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:05 Heat of formation + Delta-G solvation = -48.841416 kcal Electronic energy + Delta-G solvation = -21339.178281 eV Core-core repulsion = 18014.942212 eV Total energy + Delta-G solvation = -3324.236069 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.15740 -39.70161 -38.78363 -36.49028 -35.52668 -33.68953 -32.03282 -30.30747 -29.02603 -28.52485 -26.65677 -25.14508 -22.47456 -21.92537 -21.55557 -19.93057 -19.64172 -18.95526 -18.33355 -17.18583 -16.86284 -16.79446 -16.16833 -15.93090 -15.75093 -14.84875 -14.83428 -14.74294 -14.50116 -14.32974 -14.04189 -14.00842 -13.20989 -13.15166 -12.93399 -12.82149 -12.76844 -12.73573 -12.32050 -12.17058 -12.00583 -11.88454 -11.82714 -11.26637 -10.90105 -10.77455 -10.28102 -9.82697 -9.33736 -8.96955 -7.89753 -5.25903 -0.50811 0.49003 0.95111 1.34379 1.44942 1.48329 1.54490 1.93797 2.10207 2.48053 3.13558 3.29029 3.56040 3.72102 3.85852 3.91244 4.08203 4.19442 4.22748 4.40854 4.44703 4.62011 4.70930 4.78366 4.86789 4.90068 4.98148 5.07826 5.30681 5.37947 5.40863 5.45493 5.49572 5.63414 6.12812 6.41825 6.84938 7.05140 7.07018 7.68690 8.32660 9.20015 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032432 B = 0.003360 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.141166 B = 8331.032300 C = 8815.384339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.131 4.131 3 C -0.223 4.223 4 S 0.238 5.762 5 C -0.298 4.298 6 C 0.584 3.416 7 O -0.575 6.575 8 N -0.693 5.693 9 C 0.150 3.850 10 H 0.095 0.905 11 C 0.132 3.868 12 N -0.621 5.621 13 C -0.250 4.250 14 H 0.076 0.924 15 C -0.059 4.059 16 N -0.947 5.947 17 Si 0.981 3.019 18 H -0.279 1.279 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.161 3.839 22 C 0.093 3.907 23 H 0.094 0.906 24 O -0.565 6.565 25 C -0.056 4.056 26 H 0.079 0.921 27 H 0.068 0.932 28 H 0.083 0.917 29 H 0.201 0.799 30 H 0.415 0.585 31 H 0.024 0.976 32 H 0.029 0.971 33 H 0.250 0.750 34 H 0.027 0.973 35 H 0.029 0.971 36 H 0.400 0.600 37 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.482 15.951 -5.570 24.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C -0.360 4.360 4 S 0.507 5.493 5 C -0.418 4.418 6 C 0.372 3.628 7 O -0.457 6.457 8 N -0.345 5.345 9 C 0.044 3.956 10 H 0.113 0.887 11 C 0.005 3.995 12 N -0.348 5.348 13 C -0.379 4.379 14 H 0.094 0.906 15 C -0.252 4.252 16 N -0.596 5.596 17 Si 0.809 3.191 18 H -0.205 1.205 19 H -0.214 1.214 20 H -0.204 1.204 21 C 0.035 3.965 22 C 0.032 3.968 23 H 0.112 0.888 24 O -0.374 6.374 25 C -0.091 4.091 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.102 0.898 29 H 0.218 0.782 30 H 0.252 0.748 31 H 0.042 0.958 32 H 0.047 0.953 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.047 0.953 36 H 0.251 0.749 37 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.709 15.873 -5.272 23.642 hybrid contribution 0.197 -1.451 0.434 1.527 sum -16.511 14.422 -4.838 22.451 Atomic orbital electron populations 1.20568 0.87387 1.03791 1.03285 1.18987 0.99380 0.90753 1.05208 1.25611 0.98015 1.04560 1.07861 1.82981 1.04466 0.95147 1.66695 1.24449 0.97577 0.98650 1.21112 1.17455 0.82262 0.87640 0.75471 1.90803 1.82276 1.20205 1.52420 1.45473 1.04185 1.10728 1.74072 1.22022 0.86016 0.90719 0.96863 0.88718 1.21867 0.86267 0.96009 0.95316 1.44546 1.10594 1.51554 1.28067 1.19382 0.96446 1.17945 1.04137 0.90594 1.25616 0.97208 1.02295 1.00116 1.70100 1.11165 1.48279 1.30013 0.85123 0.77159 0.78671 0.78183 1.20504 1.21422 1.20388 1.21721 0.93004 0.94165 0.87598 1.23143 0.93067 0.82541 0.98009 0.88786 1.86208 1.46295 1.24461 1.80453 1.20858 0.90906 1.00814 0.96493 0.90231 0.91282 0.89765 0.78177 0.74762 0.95792 0.95288 0.94039 0.95497 0.95260 0.74872 0.83739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.13 71.24 0.72 -0.29 16 2 C -0.13 -2.24 5.78 -21.05 -0.12 -2.36 16 3 C -0.22 -3.19 10.67 66.81 0.71 -2.48 16 4 S 0.24 4.29 22.16 -56.49 -1.25 3.04 16 5 C -0.30 -7.88 6.45 24.08 0.16 -7.72 16 6 C 0.58 19.92 7.78 86.42 0.67 20.59 16 7 O -0.58 -24.14 16.53 -4.36 -0.07 -24.21 16 8 N -0.69 -22.54 5.17 -440.00 -2.28 -24.82 16 9 C 0.15 5.79 3.25 46.38 0.15 5.94 16 10 H 0.09 3.90 7.63 -2.38 -0.02 3.88 16 11 C 0.13 6.12 6.93 86.85 0.60 6.72 16 12 N -0.62 -33.28 3.40 -691.88 -2.35 -35.63 16 13 C -0.25 -14.61 10.28 84.04 0.86 -13.75 16 14 H 0.08 4.33 7.83 -2.91 -0.02 4.30 16 15 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 16 N -0.95 -56.08 10.31 21.65 0.22 -55.86 16 17 Si 0.98 46.38 29.55 68.60 2.03 48.40 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 C 0.16 7.72 5.14 86.73 0.45 8.16 16 22 C 0.09 3.29 4.19 31.78 0.13 3.42 16 23 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 24 O -0.57 -16.99 12.14 -148.98 -1.81 -18.80 16 25 C -0.06 -1.32 9.80 21.72 0.21 -1.11 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.77 8.13 -2.39 -0.02 0.75 16 28 H 0.08 0.64 8.12 -2.38 -0.02 0.62 16 29 H 0.20 1.49 8.06 -2.91 -0.02 1.46 16 30 H 0.41 11.67 6.68 -92.71 -0.62 11.05 16 31 H 0.02 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 34 H 0.03 1.43 7.38 -2.39 -0.02 1.42 16 35 H 0.03 1.53 7.44 -2.38 -0.02 1.51 16 36 H 0.40 8.81 9.12 -74.06 -0.68 8.14 16 37 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -73.70 325.79 -0.68 -74.37 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: -0.18 Total: 19.30 kcal Atomic # 6 Polarization: 9.19 SS G_CDS: 5.01 Total: 14.21 kcal Atomic # 7 Polarization: -111.91 SS G_CDS: -4.40 Total: -116.31 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -1.88 Total: -43.01 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.25 Total: 3.04 kcal Total: -73.70 -0.68 -74.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083446371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.533 kcal (2) G-P(sol) polarization free energy of solvation -73.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds