Wall clock time and date at job start Fri Apr 10 2020 17:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31243 * 124.05382 * 2 1 4 4 N 1.27339 * 120.03777 * 180.34312 * 3 2 1 5 5 S 1.56631 * 109.73804 * 359.70810 * 4 3 2 6 6 C 1.38245 * 124.05814 * 179.82945 * 2 1 3 7 7 C 1.47171 * 128.47345 * 359.97438 * 6 2 1 8 8 O 1.21623 * 120.00340 * 359.70614 * 7 6 2 9 9 N 1.34776 * 119.99967 * 179.70262 * 7 6 2 10 10 C 1.46501 * 120.00106 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47207 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.85193 * 43.80063 * 11 10 9 13 13 C 1.53778 * 113.61524 * 174.99887 * 11 10 9 14 14 C 1.53785 * 87.08114 * 139.97776 * 13 11 10 15 15 H 1.09002 * 113.60968 * 89.20257 * 14 13 11 16 16 N 1.46496 * 113.61818 * 220.01654 * 14 13 11 17 17 C 1.36934 * 120.00548 * 205.00025 * 16 14 13 18 18 H 1.08004 * 119.99288 * 0.02562 * 17 16 14 19 19 C 1.38805 * 120.00389 * 180.02562 * 17 16 14 20 20 N 1.31624 * 120.00257 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99929 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47174 * 270.00277 * 21 19 17 23 23 H 1.48501 * 109.47062 * 30.00228 * 21 19 17 24 24 H 1.48499 * 109.46981 * 150.00382 * 21 19 17 25 25 C 1.53779 * 87.08429 * 334.57018 * 14 13 11 26 26 H 1.08995 * 109.47180 * 270.17259 * 1 2 3 27 27 H 1.09001 * 109.46882 * 30.17779 * 1 2 3 28 28 H 1.09005 * 109.46558 * 150.16849 * 1 2 3 29 29 H 0.97002 * 120.00282 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.46730 * 60.00031 * 10 9 7 31 31 H 1.08997 * 109.46717 * 299.99986 * 10 9 7 32 32 H 1.09000 * 113.61611 * 25.43568 * 13 11 10 33 33 H 1.08994 * 113.61907 * 254.52739 * 13 11 10 34 34 H 0.96999 * 119.99694 * 25.00549 * 16 14 13 35 35 H 0.97001 * 119.99885 * 179.97438 * 20 19 17 36 36 H 1.08994 * 113.62073 * 139.97802 * 25 14 13 37 37 H 1.09000 * 113.61640 * 270.88424 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2419 1.0874 0.0000 4 7 3.5122 0.9982 -0.0066 5 16 3.9366 -0.5095 -0.0063 6 6 2.2812 -1.1453 0.0034 7 6 1.8395 -2.5491 0.0081 8 8 0.6522 -2.8131 0.0148 9 7 2.7505 -3.5423 0.0049 10 6 2.3108 -4.9398 0.0090 11 6 3.5336 -5.8592 0.0048 12 1 4.3109 -5.5331 0.6960 13 6 3.1830 -7.3511 0.1315 14 6 4.2879 -7.6180 -0.9044 15 1 5.2720 -7.7746 -0.4626 16 7 3.9354 -8.6460 -1.8868 17 6 4.9213 -9.3525 -2.5224 18 1 5.9588 -9.1521 -2.2991 19 6 4.5873 -10.3261 -3.4537 20 7 5.5349 -11.0055 -4.0642 21 14 2.7927 -10.6732 -3.8393 22 1 2.2846 -11.7267 -2.9244 23 1 1.9979 -9.4323 -3.6553 24 1 2.6691 -11.1364 -5.2448 25 6 4.0565 -6.1825 -1.4049 26 1 -0.3633 0.0031 1.0276 27 1 -0.3633 0.8884 -0.5166 28 1 -0.3632 -0.8916 -0.5113 29 1 3.6974 -3.3319 -0.0001 30 1 1.7072 -5.1332 -0.8777 31 1 1.7161 -5.1308 0.9022 32 1 2.1824 -7.5963 -0.2245 33 1 3.3972 -7.7680 1.1155 34 1 3.0036 -8.8262 -2.0871 35 1 5.3014 -11.6862 -4.7147 36 1 4.9758 -5.6558 -1.6610 37 1 3.2946 -6.1080 -2.1808 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086025481.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:17 Heat of formation + Delta-G solvation = 66.739392 kcal Electronic energy + Delta-G solvation = -20555.239418 eV Core-core repulsion = 17268.308059 eV Total energy + Delta-G solvation = -3286.931358 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.36342 -39.96224 -38.66645 -35.07489 -33.67820 -33.43581 -30.89758 -29.43601 -27.47366 -27.11368 -25.29936 -23.93195 -22.68254 -21.19678 -20.67188 -19.43992 -18.88557 -17.79240 -17.47951 -16.52446 -16.26098 -15.55764 -15.21942 -14.71043 -14.63699 -14.37584 -13.92442 -13.54806 -13.42200 -13.31201 -12.82165 -12.71491 -12.33172 -12.07258 -11.94050 -11.72697 -11.70839 -10.95510 -10.77477 -10.58678 -10.53760 -10.26316 -10.23706 -10.16800 -10.11915 -9.91854 -9.61322 -9.35604 -8.95564 -7.32835 -5.83204 -3.19232 -0.68253 0.39329 1.05101 1.53492 2.60112 2.65184 3.33568 3.36377 3.41968 3.47675 4.14715 4.30213 4.53612 4.72602 4.74584 4.89833 4.99222 5.22001 5.27327 5.33979 5.34352 5.53176 5.59151 5.70125 5.72635 5.76657 5.95898 6.08876 6.12152 6.20049 6.41013 6.57883 6.89071 6.99609 7.24572 7.68976 7.92714 8.36497 9.14061 9.86735 10.06051 11.34926 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.002759 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.179980 B =10146.414054 C =10499.177837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.102 3.898 3 N -0.251 5.251 4 N -0.252 5.252 5 S 0.419 5.581 6 C -0.294 4.294 7 C 0.600 3.400 8 O -0.515 6.515 9 N -0.714 5.714 10 C 0.132 3.868 11 C -0.129 4.129 12 H 0.093 0.907 13 C -0.145 4.145 14 C 0.172 3.828 15 H 0.085 0.915 16 N -0.737 5.737 17 C -0.250 4.250 18 H 0.091 0.909 19 C 0.005 3.995 20 N -0.932 5.932 21 Si 0.884 3.116 22 H -0.283 1.283 23 H -0.277 1.277 24 H -0.290 1.290 25 C -0.163 4.163 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.400 0.600 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.363 0.637 35 H 0.260 0.740 36 H 0.060 0.940 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.305 21.261 11.378 24.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.045 4.045 3 N -0.117 5.117 4 N -0.233 5.233 5 S 0.555 5.445 6 C -0.435 4.435 7 C 0.383 3.617 8 O -0.392 6.392 9 N -0.366 5.366 10 C 0.010 3.990 11 C -0.148 4.148 12 H 0.111 0.889 13 C -0.184 4.184 14 C 0.061 3.939 15 H 0.103 0.897 16 N -0.376 5.376 17 C -0.380 4.380 18 H 0.109 0.891 19 C -0.191 4.191 20 N -0.580 5.580 21 Si 0.714 3.286 22 H -0.210 1.210 23 H -0.203 1.203 24 H -0.217 1.217 25 C -0.204 4.204 26 H 0.108 0.892 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.235 0.765 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.196 0.804 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.290 22.029 11.264 25.301 hybrid contribution -1.951 -0.703 -0.418 2.116 sum -7.242 21.326 10.847 24.998 Atomic orbital electron populations 1.20550 0.83677 1.05131 1.04428 1.22989 1.00290 0.85010 0.96210 1.70637 0.96906 1.27977 1.16203 1.78888 1.09463 1.15652 1.19260 1.82600 1.09665 1.01539 1.50661 1.27797 0.98190 1.00085 1.17399 1.16434 0.86033 0.81928 0.77286 1.90826 1.15767 1.83034 1.49546 1.45943 1.09315 1.06818 1.74489 1.21571 0.97187 0.77573 1.02718 1.22675 0.96765 0.95268 1.00129 0.88881 1.23472 1.01083 0.93106 1.00773 1.21498 0.96292 0.87046 0.89103 0.89716 1.42759 1.05245 1.42534 1.47101 1.19127 0.89394 1.12782 1.16656 0.89128 1.24702 0.96904 0.98493 0.98978 1.69704 1.30897 1.26760 1.30603 0.86557 0.86223 0.78061 0.77714 1.20992 1.20292 1.21680 1.23952 1.00766 1.01157 0.94491 0.89245 0.89794 0.87961 0.76550 0.90663 0.91018 0.90231 0.91469 0.80430 0.92983 0.92168 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 9.89 36.01 0.36 -0.26 16 2 C 0.10 1.02 7.00 -82.84 -0.58 0.44 16 3 N -0.25 -2.78 11.54 33.42 0.39 -2.39 16 4 N -0.25 -2.64 12.51 60.35 0.75 -1.88 16 5 S 0.42 3.17 23.05 -107.50 -2.48 0.69 16 6 C -0.29 -2.79 6.81 -35.95 -0.24 -3.03 16 7 C 0.60 6.45 7.80 -12.63 -0.10 6.35 16 8 O -0.52 -6.93 14.90 5.26 0.08 -6.86 16 9 N -0.71 -6.57 5.55 -61.47 -0.34 -6.91 16 10 C 0.13 1.38 5.51 -4.04 -0.02 1.35 16 11 C -0.13 -1.40 3.75 -89.81 -0.34 -1.74 16 12 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 13 C -0.14 -1.92 7.39 -25.92 -0.19 -2.12 16 14 C 0.17 2.96 4.48 -67.12 -0.30 2.65 16 15 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 16 N -0.74 -16.53 5.20 -52.64 -0.27 -16.81 16 17 C -0.25 -6.81 10.45 -15.06 -0.16 -6.96 16 18 H 0.09 2.63 8.06 -52.48 -0.42 2.21 16 19 C 0.01 0.15 5.50 -17.43 -0.10 0.05 16 20 N -0.93 -28.76 13.97 55.49 0.78 -27.99 16 21 Si 0.88 21.62 27.74 -169.99 -4.71 16.91 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.16 -2.31 7.43 -25.92 -0.19 -2.50 16 26 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.10 0.91 6.48 -51.93 -0.34 0.57 16 29 H 0.40 2.78 7.90 -40.82 -0.32 2.45 16 30 H 0.08 0.89 7.84 -51.93 -0.41 0.49 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.36 8.04 5.78 -40.82 -0.24 7.80 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.22 7.90 -51.93 -0.41 0.81 16 LS Contribution 328.51 15.07 4.95 4.95 Total: -1.00 -32.74 328.51 -7.41 -40.14 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -4.68 Total: 5.91 kcal Atomic # 6 Polarization: -3.91 SS G_CDS: -1.86 Total: -5.77 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 1.30 Total: -55.98 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: 0.08 Total: -6.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.71 Total: 16.91 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.48 Total: 0.69 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.74 -7.41 -40.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086025481.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.884 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds