Wall clock time and date at job start Fri Apr 10 2020 17:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48505 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47386 * 300.00096 * 3 2 1 6 6 H 1.48496 * 109.46928 * 60.00207 * 3 2 1 7 7 C 1.38812 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00071 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99654 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00144 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.01138 * 33.60948 * 10 9 7 12 12 C 1.54261 * 110.03175 * 272.17278 * 10 9 7 13 13 C 1.54897 * 104.19591 * 264.32128 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05957 * 13 12 10 15 15 H 1.09004 * 110.60355 * 279.20475 * 14 13 12 16 16 C 1.53004 * 110.48581 * 156.61762 * 14 13 12 17 17 N 1.46500 * 109.47027 * 70.22748 * 16 14 13 18 18 C 1.34774 * 120.00352 * 180.02562 * 17 16 14 19 19 O 1.21624 * 119.99483 * 359.97438 * 18 17 16 20 20 C 1.47169 * 120.00503 * 179.97438 * 18 17 16 21 21 C 1.38244 * 128.48052 * 179.97438 * 20 18 17 22 22 N 1.31241 * 111.89127 * 180.02562 * 21 20 18 23 23 N 1.27329 * 120.03712 * 0.02562 * 22 21 20 24 24 S 1.56642 * 109.74409 * 359.97438 * 23 22 21 25 25 C 1.53876 * 110.03432 * 155.00111 * 10 9 7 26 26 H 0.96993 * 120.00713 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00127 * 0.02562 * 9 7 2 28 28 H 1.08997 * 110.48943 * 22.99903 * 12 10 9 29 29 H 1.09011 * 110.48489 * 145.51517 * 12 10 9 30 30 H 1.08997 * 110.75738 * 203.74844 * 13 12 10 31 31 H 1.08996 * 110.75190 * 80.37344 * 13 12 10 32 32 H 1.08999 * 109.47292 * 310.22658 * 16 14 13 33 33 H 1.09002 * 109.47235 * 190.22042 * 16 14 13 34 34 H 0.97005 * 119.99729 * 359.97438 * 17 16 14 35 35 H 1.08006 * 124.05288 * 0.02562 * 21 20 18 36 36 H 1.09007 * 110.02904 * 0.02562 * 25 10 9 37 37 H 1.08995 * 110.03186 * 238.57257 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9834 -3.5533 0.5664 12 6 2.3700 -4.0869 -1.4488 13 6 1.2217 -5.0613 -1.8112 14 6 1.0000 -5.8353 -0.4880 15 1 1.7394 -6.6287 -0.3792 16 6 -0.4156 -6.4138 -0.4369 17 7 -0.5324 -7.5052 -1.4072 18 6 -1.6987 -8.1676 -1.5392 19 8 -2.6540 -7.8595 -0.8525 20 6 -1.8163 -9.2636 -2.5144 21 6 -2.9163 -10.0533 -2.7924 22 7 -2.6596 -10.9387 -3.7264 23 7 -1.5028 -10.9892 -4.2561 24 16 -0.5809 -9.8946 -3.6191 25 6 1.1871 -4.7684 0.6104 26 1 -0.4851 0.8399 0.0004 27 1 0.3557 -2.3881 -0.0005 28 1 2.3614 -3.2232 -2.1136 29 1 3.3334 -4.5947 -1.4969 30 1 1.5272 -5.7389 -2.6085 31 1 0.3234 -4.5119 -2.0926 32 1 -1.1362 -5.6330 -0.6798 33 1 -0.6164 -6.7949 0.5644 34 1 0.2295 -7.7506 -1.9552 35 1 -3.8724 -9.9536 -2.2999 36 1 0.2191 -4.3640 0.9065 37 1 1.6899 -5.2050 1.4733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086651178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:23 Heat of formation + Delta-G solvation = 38.812573 kcal Electronic energy + Delta-G solvation = -20714.460860 eV Core-core repulsion = 17426.318504 eV Total energy + Delta-G solvation = -3288.142356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.22862 -39.89350 -38.20387 -35.14560 -33.42290 -32.52310 -30.78314 -29.24990 -28.06501 -27.16039 -24.69185 -23.28248 -22.76151 -21.06540 -20.05060 -19.61912 -19.17295 -17.78796 -17.13556 -16.45501 -16.31910 -15.62531 -15.31907 -14.92137 -14.81614 -14.40449 -13.78372 -13.52350 -13.27559 -13.11146 -12.72297 -12.40251 -12.33177 -11.47150 -11.26528 -10.93605 -10.79999 -10.73539 -10.66651 -10.56288 -10.51278 -10.45624 -10.33542 -10.27282 -10.20126 -9.94687 -9.65808 -9.35958 -8.91301 -6.96316 -5.78645 -3.07121 -0.69084 0.37246 1.04844 1.57053 2.63129 2.66758 3.41370 3.47168 3.49386 3.60761 4.26599 4.34269 4.56600 4.76291 4.85451 4.99922 5.17313 5.45937 5.49728 5.63129 5.64407 5.82285 5.90229 5.96127 6.03286 6.10053 6.19455 6.27648 6.40574 6.60403 6.68309 6.86278 6.99836 7.06902 7.21997 7.69626 7.70903 8.40572 9.51387 10.10461 10.44156 11.43978 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002672 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.071708 B =10475.208152 C =10689.427070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.239 4.239 8 H 0.070 0.930 9 N -0.721 5.721 10 C 0.174 3.826 11 H 0.049 0.951 12 C -0.146 4.146 13 C -0.115 4.115 14 C -0.105 4.105 15 H 0.076 0.924 16 C 0.125 3.875 17 N -0.714 5.714 18 C 0.597 3.403 19 O -0.514 6.514 20 C -0.282 4.282 21 C 0.073 3.927 22 N -0.251 5.251 23 N -0.256 5.256 24 S 0.421 5.579 25 C -0.121 4.121 26 H 0.254 0.746 27 H 0.383 0.617 28 H 0.072 0.928 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.217 0.783 36 H 0.073 0.927 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.547 -21.066 -5.300 21.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.088 0.912 9 N -0.362 5.362 10 C 0.064 3.936 11 H 0.067 0.933 12 C -0.187 4.187 13 C -0.152 4.152 14 C -0.124 4.124 15 H 0.095 0.905 16 C 0.003 3.997 17 N -0.366 5.366 18 C 0.380 3.620 19 O -0.390 6.390 20 C -0.424 4.424 21 C -0.094 4.094 22 N -0.115 5.115 23 N -0.238 5.238 24 S 0.555 5.445 25 C -0.160 4.160 26 H 0.064 0.936 27 H 0.217 0.783 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.233 0.767 35 H 0.233 0.767 36 H 0.092 0.908 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.987 -21.675 -6.121 22.544 hybrid contribution -0.518 1.417 0.601 1.623 sum 0.469 -20.258 -5.521 21.002 Atomic orbital electron populations 1.69662 1.05088 1.25551 1.57754 1.24741 0.95496 0.97682 1.03084 0.86150 0.78780 0.84271 0.77183 1.20591 1.21928 1.21898 1.19293 0.91027 0.84193 1.42492 0.91170 1.42555 1.05667 0.99720 1.88271 1.20798 0.94154 0.86070 0.92598 0.93321 1.23124 0.95971 0.98642 1.00950 1.22527 1.00167 0.97481 0.95046 1.22269 0.94314 0.97972 0.97828 0.90514 1.21694 0.98239 0.88096 0.91681 1.45946 1.12696 1.36047 1.41873 1.16478 0.83713 0.80332 0.81500 1.90886 1.37516 1.65895 1.44682 1.28144 0.99396 1.06955 1.07882 1.24509 1.01154 0.89742 0.93958 1.70707 1.10037 1.21085 1.09704 1.78896 1.02525 1.19152 1.23198 1.82632 1.20934 1.20499 1.20388 1.22471 1.01589 0.95343 0.96591 0.93558 0.78262 0.90906 0.93252 0.92934 0.91171 0.90247 0.90897 0.76659 0.76661 0.90787 0.91910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.90 22.04 29.55 -169.99 -5.02 17.01 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.42 9.96 -15.06 -0.15 -6.57 16 8 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 9 N -0.72 -17.19 5.08 -52.34 -0.27 -17.45 16 10 C 0.17 3.18 3.55 -66.81 -0.24 2.94 16 11 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 12 C -0.15 -2.32 6.54 -25.07 -0.16 -2.49 16 13 C -0.11 -1.47 6.19 -24.74 -0.15 -1.62 16 14 C -0.10 -1.18 2.89 -88.96 -0.26 -1.44 16 15 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 16 C 0.13 1.40 4.96 -4.04 -0.02 1.38 16 17 N -0.71 -6.66 5.44 -61.46 -0.33 -7.00 16 18 C 0.60 6.51 7.80 -12.64 -0.10 6.41 16 19 O -0.51 -7.47 16.98 5.26 0.09 -7.38 16 20 C -0.28 -2.50 6.81 -35.96 -0.25 -2.74 16 21 C 0.07 0.65 11.55 -17.80 -0.21 0.44 16 22 N -0.25 -2.59 11.54 30.36 0.35 -2.24 16 23 N -0.26 -2.52 12.51 60.35 0.75 -1.77 16 24 S 0.42 2.90 23.05 -107.50 -2.48 0.42 16 25 C -0.12 -1.75 6.14 -25.61 -0.16 -1.91 16 26 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.38 9.78 7.52 -40.82 -0.31 9.47 16 28 H 0.07 1.37 8.04 -51.93 -0.42 0.95 16 29 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.04 7.97 -51.93 -0.41 0.63 16 32 H 0.08 1.04 8.02 -51.93 -0.42 0.63 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.40 2.70 7.87 -40.82 -0.32 2.38 16 35 H 0.22 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.07 1.19 7.31 -51.92 -0.38 0.81 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 330.13 15.07 4.98 4.98 Total: -1.00 -32.20 330.13 -7.75 -39.95 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.76 Total: 6.56 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: -1.78 Total: -6.10 kcal Atomic # 7 Polarization: -56.67 SS G_CDS: 1.23 Total: -55.44 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 2.90 SS G_CDS: -2.48 Total: 0.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.20 -7.75 -39.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086651178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.760 kcal (2) G-P(sol) polarization free energy of solvation -32.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds