Wall clock time and date at job start Fri Apr 10 2020 17:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99809 * 2 1 4 4 H 1.48505 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47386 * 300.00096 * 3 2 1 6 6 H 1.48496 * 109.46928 * 60.00207 * 3 2 1 7 7 C 1.38812 * 120.00519 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00071 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99654 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00144 * 180.02562 * 9 7 2 11 11 H 1.09003 * 110.01138 * 33.60948 * 10 9 7 12 12 C 1.54261 * 110.03175 * 272.17278 * 10 9 7 13 13 C 1.54897 * 104.19591 * 264.32128 * 12 10 9 14 14 C 1.54887 * 102.74533 * 322.05957 * 13 12 10 15 15 H 1.09004 * 110.60355 * 279.20475 * 14 13 12 16 16 C 1.53004 * 110.48581 * 156.61762 * 14 13 12 17 17 N 1.46500 * 109.47027 * 70.22748 * 16 14 13 18 18 C 1.34774 * 120.00352 * 180.02562 * 17 16 14 19 19 O 1.21624 * 119.99483 * 359.97438 * 18 17 16 20 20 C 1.47169 * 120.00503 * 179.97438 * 18 17 16 21 21 C 1.38244 * 128.48052 * 179.97438 * 20 18 17 22 22 N 1.31241 * 111.89127 * 180.02562 * 21 20 18 23 23 N 1.27329 * 120.03712 * 0.02562 * 22 21 20 24 24 S 1.56642 * 109.74409 * 359.97438 * 23 22 21 25 25 C 1.53876 * 110.03432 * 155.00111 * 10 9 7 26 26 H 0.96993 * 120.00713 * 359.97438 * 1 2 3 27 27 H 0.97000 * 120.00127 * 0.02562 * 9 7 2 28 28 H 1.08997 * 110.48943 * 22.99903 * 12 10 9 29 29 H 1.09011 * 110.48489 * 145.51517 * 12 10 9 30 30 H 1.08997 * 110.75738 * 203.74844 * 13 12 10 31 31 H 1.08996 * 110.75190 * 80.37344 * 13 12 10 32 32 H 1.08999 * 109.47292 * 310.22658 * 16 14 13 33 33 H 1.09002 * 109.47235 * 190.22042 * 16 14 13 34 34 H 0.97005 * 119.99729 * 359.97438 * 17 16 14 35 35 H 1.08006 * 124.05288 * 0.02562 * 21 20 18 36 36 H 1.09007 * 110.02904 * 0.02562 * 25 10 9 37 37 H 1.08995 * 110.03186 * 238.57257 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 1 2.9834 -3.5533 0.5664 12 6 2.3700 -4.0869 -1.4488 13 6 1.2217 -5.0613 -1.8112 14 6 1.0000 -5.8353 -0.4880 15 1 1.7394 -6.6287 -0.3792 16 6 -0.4156 -6.4138 -0.4369 17 7 -0.5324 -7.5052 -1.4072 18 6 -1.6987 -8.1676 -1.5392 19 8 -2.6540 -7.8595 -0.8525 20 6 -1.8163 -9.2636 -2.5144 21 6 -2.9163 -10.0533 -2.7924 22 7 -2.6596 -10.9387 -3.7264 23 7 -1.5028 -10.9892 -4.2561 24 16 -0.5809 -9.8946 -3.6191 25 6 1.1871 -4.7684 0.6104 26 1 -0.4851 0.8399 0.0004 27 1 0.3557 -2.3881 -0.0005 28 1 2.3614 -3.2232 -2.1136 29 1 3.3334 -4.5947 -1.4969 30 1 1.5272 -5.7389 -2.6085 31 1 0.3234 -4.5119 -2.0926 32 1 -1.1362 -5.6330 -0.6798 33 1 -0.6164 -6.7949 0.5644 34 1 0.2295 -7.7506 -1.9552 35 1 -3.8724 -9.9536 -2.2999 36 1 0.2191 -4.3640 0.9065 37 1 1.6899 -5.2050 1.4733 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086651178.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:22 Heat of formation + Delta-G solvation = 15.297027 kcal Electronic energy + Delta-G solvation = -20715.480571 eV Core-core repulsion = 17426.318504 eV Total energy + Delta-G solvation = -3289.162067 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.92699 -40.78971 -39.40830 -36.36625 -35.02410 -33.31185 -32.43560 -30.43518 -29.10634 -28.32835 -25.92700 -25.01286 -23.59292 -21.90314 -21.04317 -20.72920 -20.17610 -19.12564 -18.55957 -17.37938 -17.06607 -16.73723 -16.51950 -16.01542 -15.94449 -15.55770 -15.16996 -15.01462 -14.49989 -14.18956 -13.83493 -13.54280 -13.13126 -13.02669 -12.97080 -12.47150 -12.32831 -12.09833 -11.95229 -11.70098 -11.61817 -11.48680 -11.47030 -11.35786 -11.20020 -11.19318 -10.92824 -10.88428 -10.22946 -8.93550 -7.91805 -5.18583 -1.37081 -0.25603 0.41080 0.86584 1.47789 1.47858 1.57750 1.81681 1.85988 2.58096 2.94778 3.40570 3.56279 3.63769 3.71707 3.83613 3.89109 4.23662 4.44757 4.56929 4.57614 4.64121 4.73074 4.82607 4.86783 4.96818 5.11242 5.18581 5.21314 5.27154 5.48615 5.55132 5.61653 5.71142 6.25716 6.32383 6.55614 6.92665 7.37051 8.18301 8.38007 9.32059 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.032776 B = 0.002672 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.071708 B =10475.208152 C =10689.427070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.080 4.080 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.297 1.297 6 H -0.296 1.296 7 C -0.232 4.232 8 H 0.075 0.925 9 N -0.735 5.735 10 C 0.160 3.840 11 H 0.043 0.957 12 C -0.140 4.140 13 C -0.109 4.109 14 C -0.085 4.085 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.701 5.701 18 C 0.601 3.399 19 O -0.557 6.557 20 C -0.303 4.303 21 C 0.075 3.925 22 N -0.277 5.277 23 N -0.289 5.289 24 S 0.514 5.486 25 C -0.117 4.117 26 H 0.249 0.751 27 H 0.370 0.630 28 H 0.036 0.964 29 H 0.079 0.921 30 H 0.091 0.909 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.415 0.585 35 H 0.228 0.772 36 H 0.051 0.949 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.715 -22.952 -5.909 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.272 4.272 3 Si 0.798 3.202 4 H -0.189 1.189 5 H -0.224 1.224 6 H -0.224 1.224 7 C -0.364 4.364 8 H 0.093 0.907 9 N -0.375 5.375 10 C 0.052 3.948 11 H 0.061 0.939 12 C -0.180 4.180 13 C -0.147 4.147 14 C -0.104 4.104 15 H 0.133 0.867 16 C 0.009 3.991 17 N -0.353 5.353 18 C 0.385 3.615 19 O -0.436 6.436 20 C -0.444 4.444 21 C -0.093 4.093 22 N -0.140 5.140 23 N -0.271 5.271 24 S 0.648 5.352 25 C -0.156 4.156 26 H 0.057 0.943 27 H 0.202 0.798 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.252 0.748 35 H 0.244 0.756 36 H 0.070 0.930 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.232 -23.623 -6.760 24.783 hybrid contribution -1.062 1.947 0.775 2.349 sum 2.170 -21.676 -5.986 22.591 Atomic orbital electron populations 1.69817 1.06573 1.25723 1.60180 1.25511 0.96306 1.00961 1.04428 0.85144 0.78356 0.80281 0.76456 1.18945 1.22402 1.22356 1.19672 0.91392 0.85426 1.39920 0.90703 1.42786 1.05280 1.01055 1.88384 1.21163 0.94068 0.85044 0.94549 0.93891 1.22957 0.98730 0.98346 0.97980 1.22493 0.97811 0.97350 0.97038 1.22148 0.95250 0.97681 0.95346 0.86675 1.21471 0.97501 0.87943 0.92222 1.45743 1.12936 1.35110 1.41496 1.16641 0.83316 0.80372 0.81174 1.90869 1.38964 1.67274 1.46499 1.27952 1.00867 1.06941 1.08639 1.24746 1.01799 0.89245 0.93484 1.70776 1.10539 1.22078 1.10564 1.78642 1.03156 1.20944 1.24356 1.82213 1.18016 1.17562 1.17375 1.22376 0.99842 0.95073 0.98283 0.94263 0.79761 0.94488 0.90249 0.89061 0.93872 0.92830 0.90684 0.74798 0.75619 0.92994 0.89806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 2 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 3 Si 0.97 45.96 29.55 68.60 2.03 47.99 16 4 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 5 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 7 C -0.23 -12.61 9.96 84.03 0.84 -11.77 16 8 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 9 N -0.73 -35.69 5.08 -319.51 -1.62 -37.31 16 10 C 0.16 5.70 3.55 45.71 0.16 5.86 16 11 H 0.04 1.57 8.09 -2.39 -0.02 1.55 16 12 C -0.14 -4.18 6.54 31.67 0.21 -3.98 16 13 C -0.11 -2.52 6.19 31.89 0.20 -2.32 16 14 C -0.09 -1.66 2.89 -9.72 -0.03 -1.69 16 15 H 0.12 1.49 8.14 -2.38 -0.02 1.47 16 16 C 0.13 2.70 4.96 86.38 0.43 3.13 16 17 N -0.70 -11.22 5.44 -466.62 -2.54 -13.76 16 18 C 0.60 12.19 7.80 86.59 0.68 12.86 16 19 O -0.56 -16.08 16.98 -4.11 -0.07 -16.15 16 20 C -0.30 -4.78 6.81 24.62 0.17 -4.62 16 21 C 0.08 1.25 11.55 84.78 0.98 2.23 16 22 N -0.28 -5.39 11.54 -57.86 -0.67 -6.06 16 23 N -0.29 -5.15 12.51 37.02 0.46 -4.68 16 24 S 0.51 5.51 23.05 -56.49 -1.30 4.21 16 25 C -0.12 -3.20 6.14 31.32 0.19 -3.01 16 26 H 0.25 14.83 8.31 -92.71 -0.77 14.06 16 27 H 0.37 19.63 7.52 -92.71 -0.70 18.94 16 28 H 0.04 1.37 8.04 -2.39 -0.02 1.35 16 29 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.04 1.24 7.97 -2.39 -0.02 1.22 16 32 H 0.05 1.41 8.02 -2.39 -0.02 1.39 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.41 3.86 7.87 -92.70 -0.73 3.13 16 35 H 0.23 2.99 8.06 -2.91 -0.02 2.97 16 36 H 0.05 1.67 7.31 -2.38 -0.02 1.65 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -72.48 330.13 0.54 -71.94 By element: Atomic # 1 Polarization: 20.79 SS G_CDS: -0.31 Total: 20.48 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 4.29 Total: -7.41 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -4.08 Total: -121.06 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.07 Total: -16.15 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Atomic # 16 Polarization: 5.51 SS G_CDS: -1.30 Total: 4.21 kcal Total: -72.48 0.54 -71.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086651178.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.237 kcal (2) G-P(sol) polarization free energy of solvation -72.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds