Wall clock time and date at job start Fri Apr 10 2020 17:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47344 * 2 1 4 4 H 1.08997 * 110.00169 * 304.62618 * 3 2 1 5 5 C 1.54337 * 109.99349 * 183.58576 * 3 2 1 6 6 H 1.09009 * 110.51408 * 336.98171 * 5 3 2 7 7 N 1.46497 * 110.84860 * 100.19673 * 5 3 2 8 8 C 1.34773 * 119.99897 * 200.14385 * 7 5 3 9 9 O 1.21566 * 120.00586 * 0.02562 * 8 7 5 10 10 C 1.47755 * 119.99856 * 180.02562 * 8 7 5 11 11 C 1.39354 * 124.11744 * 179.72774 * 10 8 7 12 12 N 1.30092 * 112.14749 * 179.82861 * 11 10 8 13 13 S 1.55920 * 108.75017 * 0.42465 * 12 11 10 14 14 N 1.31487 * 124.11652 * 0.03742 * 10 8 7 15 15 C 1.55156 * 103.02194 * 218.66980 * 5 3 2 16 16 C 1.54910 * 101.58094 * 35.30826 * 15 5 3 17 17 N 1.47029 * 109.87840 * 65.71935 * 3 2 1 18 18 C 1.36929 * 125.64715 * 298.39367 * 17 3 2 19 19 H 1.07995 * 120.00262 * 333.70687 * 18 17 3 20 20 C 1.38817 * 119.99616 * 153.71303 * 18 17 3 21 21 N 1.31623 * 119.99847 * 334.82944 * 20 18 17 22 22 Si 1.86801 * 120.00106 * 154.83543 * 20 18 17 23 23 H 1.48500 * 109.46938 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47159 * 239.99924 * 22 20 18 25 25 H 1.48497 * 109.47066 * 119.99285 * 22 20 18 26 26 H 1.09003 * 109.46659 * 291.79177 * 1 2 3 27 27 H 1.09001 * 109.47173 * 51.78393 * 1 2 3 28 28 H 1.09000 * 109.47494 * 171.78859 * 1 2 3 29 29 H 1.09002 * 109.46507 * 240.00312 * 2 1 3 30 30 H 1.08995 * 109.47359 * 120.00506 * 2 1 3 31 31 H 0.97003 * 119.99677 * 20.15469 * 7 5 3 32 32 H 1.08009 * 123.92359 * 0.02562 * 11 10 8 33 33 H 1.09000 * 111.00497 * 277.23103 * 15 5 3 34 34 H 1.08995 * 111.00085 * 153.37724 * 15 5 3 35 35 H 1.08998 * 110.36323 * 204.15638 * 16 15 5 36 36 H 1.08998 * 110.37052 * 81.82802 * 16 15 5 37 37 H 0.96994 * 120.00061 * 353.73735 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6156 1.9880 -0.8428 5 6 3.5807 1.4574 -0.0907 6 1 3.9935 0.5134 0.2652 7 7 4.0196 1.7329 -1.4610 8 6 5.2661 1.3984 -1.8493 9 8 6.0261 0.8678 -1.0627 10 6 5.7090 1.6768 -3.2311 11 6 6.9776 1.3729 -3.7215 12 7 7.1160 1.7149 -4.9690 13 16 5.7858 2.3620 -5.4619 14 7 4.9562 2.2466 -4.1462 15 6 3.9754 2.6210 0.8567 16 6 2.9035 2.4946 1.9679 17 7 1.6707 2.1033 1.2604 18 6 0.3933 2.3150 1.7059 19 1 -0.4192 2.3937 0.9989 20 6 0.1428 2.4287 3.0666 21 7 0.9579 1.8681 3.9349 22 14 -1.3511 3.3769 3.6653 23 1 -2.1014 3.9067 2.4984 24 1 -0.9097 4.5057 4.5233 25 1 -2.2296 2.4726 4.4499 26 1 -0.3633 0.3815 0.9543 27 1 -0.3633 0.6357 -0.8074 28 1 -0.3634 -1.0171 -0.1468 29 1 1.8932 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.4132 2.1561 -2.0887 32 1 7.7544 0.9048 -3.1350 33 1 3.8993 3.5820 0.3479 34 1 4.9767 2.4730 1.2611 35 1 2.7645 3.4512 2.4714 36 1 3.1896 1.7254 2.6852 37 1 1.6809 1.3006 3.6250 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087510677.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:26 Heat of formation + Delta-G solvation = 21.614139 kcal Electronic energy + Delta-G solvation = -21835.591254 eV Core-core repulsion = 18546.703118 eV Total energy + Delta-G solvation = -3288.888136 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21672 -40.71807 -39.29244 -35.91501 -34.77385 -34.22750 -33.53800 -30.55770 -28.99803 -28.10643 -26.33177 -24.36663 -23.43564 -22.05354 -21.74675 -21.10153 -20.38739 -19.31420 -18.79766 -17.61644 -17.15984 -16.52360 -16.10330 -16.06545 -15.60179 -15.53921 -15.19462 -14.86573 -14.61787 -14.04201 -13.76881 -13.36715 -13.27723 -12.83738 -12.68527 -12.59214 -12.49346 -12.28709 -12.17782 -12.10648 -11.86849 -11.84196 -11.75243 -11.57662 -11.38756 -11.25195 -10.43838 -10.34383 -10.08431 -8.91829 -8.16847 -5.31698 -0.67571 0.32822 0.43346 0.62280 1.61162 1.68291 1.83275 1.89362 1.95811 2.68048 3.27032 3.32948 3.47624 3.68301 3.70897 3.75178 4.01761 4.09417 4.27517 4.37553 4.44293 4.47801 4.56015 4.66173 4.85472 4.93367 4.98588 5.06103 5.13105 5.21801 5.26811 5.34012 5.51289 5.64817 5.85320 6.33859 6.40871 6.93168 6.98324 7.75601 8.36746 9.09417 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029478 B = 0.003521 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.645688 B = 7949.833619 C = 8132.552230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C 0.155 3.845 4 H 0.048 0.952 5 C 0.150 3.850 6 H 0.087 0.913 7 N -0.686 5.686 8 C 0.605 3.395 9 O -0.552 6.552 10 C -0.004 4.004 11 C 0.090 3.910 12 N -0.598 5.598 13 S 0.802 5.198 14 N -0.565 5.565 15 C -0.128 4.128 16 C 0.148 3.852 17 N -0.607 5.607 18 C -0.314 4.314 19 H 0.063 0.937 20 C -0.078 4.078 21 N -0.948 5.948 22 Si 1.114 2.886 23 H -0.271 1.271 24 H -0.293 1.293 25 H -0.295 1.295 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.416 0.584 32 H 0.225 0.775 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.026 0.974 36 H 0.007 0.993 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.902 0.858 -20.292 22.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C 0.048 3.952 4 H 0.066 0.934 5 C 0.045 3.955 6 H 0.105 0.895 7 N -0.337 5.337 8 C 0.387 3.613 9 O -0.430 6.430 10 C -0.176 4.176 11 C -0.101 4.101 12 N -0.440 5.440 13 S 0.843 5.157 14 N -0.418 5.418 15 C -0.168 4.168 16 C 0.022 3.978 17 N -0.333 5.333 18 C -0.443 4.443 19 H 0.081 0.919 20 C -0.274 4.274 21 N -0.591 5.591 22 Si 0.940 3.060 23 H -0.195 1.195 24 H -0.220 1.220 25 H -0.222 1.222 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.053 0.947 31 H 0.253 0.747 32 H 0.241 0.759 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.044 0.956 36 H 0.025 0.975 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.052 1.836 -20.259 21.877 hybrid contribution 0.952 -1.272 0.579 1.691 sum 9.005 0.564 -19.679 21.649 Atomic orbital electron populations 1.21767 0.95642 1.00217 1.02337 1.21823 0.97036 0.97001 0.99961 1.21304 0.90964 0.92600 0.90292 0.93410 1.21814 0.94255 0.98519 0.80933 0.89470 1.45680 1.13875 1.60876 1.13260 1.16975 0.81937 0.78058 0.84341 1.90821 1.54251 1.44374 1.53531 1.22160 0.93268 1.06148 0.96055 1.23846 0.97322 0.99310 0.89659 1.72186 1.33028 1.21819 1.16981 1.78770 0.87643 1.36610 1.12642 1.72255 1.39146 1.20869 1.09512 1.23056 0.98463 0.98624 0.96629 1.21404 0.86351 0.96499 0.93585 1.44722 1.01592 1.66210 1.20733 1.19827 0.84782 1.47095 0.92557 0.91947 1.27020 1.05892 1.01440 0.93089 1.70817 1.20167 1.31220 1.36867 0.82866 0.72653 0.75138 0.75392 1.19532 1.21990 1.22191 0.92782 0.93214 0.93075 0.91324 0.94747 0.74685 0.75892 0.90494 0.90331 0.95596 0.97536 0.93421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.37 8.98 71.98 0.65 -4.72 16 2 C -0.12 -4.42 5.47 30.59 0.17 -4.26 16 3 C 0.15 5.96 3.00 45.34 0.14 6.10 16 4 H 0.05 1.78 7.69 -2.39 -0.02 1.76 16 5 C 0.15 5.12 2.76 46.18 0.13 5.25 16 6 H 0.09 3.19 7.40 -2.38 -0.02 3.17 16 7 N -0.69 -19.12 5.20 -439.84 -2.29 -21.41 16 8 C 0.61 16.76 7.82 86.76 0.68 17.44 16 9 O -0.55 -18.27 16.54 -3.92 -0.06 -18.34 16 10 C 0.00 -0.08 6.81 41.98 0.29 0.21 16 11 C 0.09 1.69 11.22 85.22 0.96 2.65 16 12 N -0.60 -10.31 11.41 -92.48 -1.06 -11.37 16 13 S 0.80 10.31 23.69 -56.49 -1.34 8.97 16 14 N -0.57 -10.86 11.00 -80.60 -0.89 -11.75 16 15 C -0.13 -4.65 6.77 31.99 0.22 -4.44 16 16 C 0.15 6.84 5.56 86.85 0.48 7.32 16 17 N -0.61 -29.05 2.92 -668.22 -1.95 -31.00 16 18 C -0.31 -16.62 7.22 84.04 0.61 -16.01 16 19 H 0.06 3.28 7.24 -2.91 -0.02 3.26 16 20 C -0.08 -4.33 5.18 84.86 0.44 -3.89 16 21 N -0.95 -57.35 13.05 21.65 0.28 -57.07 16 22 Si 1.11 50.50 29.99 68.60 2.06 52.56 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.28 7.11 99.48 0.71 -12.58 16 26 H 0.05 2.47 5.52 -2.39 -0.01 2.45 16 27 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.42 10.37 7.91 -92.71 -0.73 9.63 16 32 H 0.22 3.51 8.06 -2.91 -0.02 3.49 16 33 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.01 0.35 6.73 -2.39 -0.02 0.33 16 37 H 0.26 15.77 6.20 -92.71 -0.57 15.19 16 Total: -1.00 -66.64 319.63 0.07 -66.58 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.57 Total: 17.17 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: 4.74 Total: 5.65 kcal Atomic # 7 Polarization: -126.69 SS G_CDS: -5.90 Total: -132.59 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.06 Total: -18.34 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.06 Total: 52.56 kcal Atomic # 16 Polarization: 10.31 SS G_CDS: -1.34 Total: 8.97 kcal Total: -66.64 0.07 -66.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087510677.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.190 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds