Wall clock time and date at job start Fri Apr 10 2020 17:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00157 * 2 1 4 4 H 1.48494 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47300 * 300.00206 * 3 2 1 6 6 H 1.48499 * 109.47371 * 59.99841 * 3 2 1 7 7 C 1.38813 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00053 * 163.07572 * 7 2 1 9 9 N 1.36943 * 120.00236 * 343.07999 * 7 2 1 10 10 C 1.46916 * 120.63134 * 151.81159 * 9 7 2 11 11 C 1.53187 * 108.77719 * 126.41520 * 10 9 7 12 12 C 1.53038 * 109.31524 * 54.62999 * 11 10 9 13 13 H 1.08999 * 109.46073 * 178.61429 * 12 11 10 14 14 N 1.46499 * 109.45878 * 58.66188 * 12 11 10 15 15 C 1.34770 * 120.00689 * 84.93111 * 14 12 11 16 16 O 1.21645 * 119.99636 * 0.02562 * 15 14 12 17 17 C 1.47191 * 120.00453 * 179.97438 * 15 14 12 18 18 C 1.44423 * 123.45952 * 179.97438 * 17 15 14 19 19 C 1.32769 * 113.08196 * 180.02562 * 18 17 15 20 20 S 1.75503 * 110.57460 * 0.02562 * 19 18 17 21 21 C 1.36007 * 123.45692 * 359.70693 * 17 15 14 22 22 C 1.53040 * 109.53747 * 298.63612 * 12 11 10 23 23 H 1.08996 * 109.52699 * 301.39479 * 22 12 11 24 24 O 1.42903 * 109.49662 * 181.31551 * 22 12 11 25 25 C 1.46927 * 120.62607 * 331.83180 * 9 7 2 26 26 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.58685 * 246.19753 * 10 9 7 28 28 H 1.09005 * 109.59049 * 6.47573 * 10 9 7 29 29 H 1.08998 * 109.50103 * 174.58891 * 11 10 9 30 30 H 1.09005 * 109.49305 * 294.64687 * 11 10 9 31 31 H 0.97008 * 119.99259 * 264.93253 * 14 12 11 32 32 H 1.07995 * 123.46227 * 0.02562 * 18 17 15 33 33 H 1.08006 * 124.71527 * 179.97438 * 19 18 17 34 34 H 1.07996 * 124.59260 * 359.97438 * 21 17 15 35 35 H 0.96693 * 113.99642 * 180.16686 * 24 22 12 36 36 H 1.09003 * 109.58449 * 113.80204 * 25 9 7 37 37 H 1.09000 * 109.59043 * 353.37498 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3701 -2.3623 0.3462 10 6 1.8137 -3.6529 -0.1980 11 6 2.0673 -4.6174 0.9648 12 6 0.8120 -4.7008 1.8362 13 1 0.9814 -5.4053 2.6505 14 7 -0.3174 -5.1580 1.0228 15 6 -0.5189 -6.4765 0.8298 16 8 0.2367 -7.2870 1.3316 17 6 -1.6539 -6.9358 0.0130 18 6 -1.9392 -8.3283 -0.2424 19 6 -3.0112 -8.5088 -1.0046 20 16 -3.7214 -6.9656 -1.4455 21 6 -2.5448 -6.0925 -0.5744 22 6 0.4977 -3.3191 2.4145 23 1 1.3471 -2.9674 3.0000 24 8 -0.6567 -3.4042 3.2525 25 6 0.2262 -2.3399 1.2681 26 1 -0.4850 0.8400 -0.0004 27 1 1.0399 -4.0605 -0.8487 28 1 2.7330 -3.5131 -0.7668 29 1 2.3040 -5.6063 0.5722 30 1 2.9027 -4.2540 1.5632 31 1 -0.9201 -4.5115 0.6229 32 1 -1.3419 -9.1396 0.1466 33 1 -3.3928 -9.4715 -1.3116 34 1 -2.5097 -5.0156 -0.5013 35 1 -0.9157 -2.5625 3.6518 36 1 -0.6770 -2.6404 0.7369 37 1 0.0994 -1.3342 1.6688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090041580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:42 Heat of formation + Delta-G solvation = -29.730879 kcal Electronic energy + Delta-G solvation = -22202.027639 eV Core-core repulsion = 18878.620265 eV Total energy + Delta-G solvation = -3323.407374 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.95759 -38.13129 -36.56347 -35.31026 -34.10066 -32.08876 -30.29475 -29.23457 -28.71651 -25.52705 -24.76317 -22.49899 -21.95380 -21.41096 -19.22904 -18.77416 -18.02012 -16.96938 -16.90588 -16.56866 -15.25764 -15.03638 -14.70159 -14.55141 -14.01568 -13.75677 -13.52434 -13.30095 -13.02294 -12.85386 -12.61961 -12.40948 -12.25079 -11.86266 -11.69099 -11.18121 -11.08842 -11.02808 -10.87766 -10.44434 -10.23624 -10.03421 -9.72894 -9.55035 -9.35588 -9.10596 -8.72444 -8.59846 -8.40028 -6.81830 -5.93228 -3.36731 0.77878 1.49844 1.87307 2.05856 3.28655 3.37796 3.39805 3.52519 3.61231 4.37038 4.57610 4.75628 5.12913 5.21179 5.24814 5.35484 5.38387 5.47542 5.69104 5.78103 5.81112 5.91017 6.01181 6.03514 6.22534 6.23335 6.43299 6.44879 6.69397 6.78380 6.94081 7.01937 7.35690 7.67914 7.88694 8.06975 8.30756 8.54262 9.05704 9.68370 10.24265 11.15061 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.004359 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.767345 B = 6422.216461 C = 6964.445793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.903 3.097 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.254 4.254 8 H 0.069 0.931 9 N -0.588 5.588 10 C 0.145 3.855 11 C -0.145 4.145 12 C 0.166 3.834 13 H 0.080 0.920 14 N -0.698 5.698 15 C 0.575 3.425 16 O -0.550 6.550 17 C -0.151 4.151 18 C -0.084 4.084 19 C -0.242 4.242 20 S 0.177 5.823 21 C -0.205 4.205 22 C 0.066 3.934 23 H 0.063 0.937 24 O -0.573 6.573 25 C 0.147 3.853 26 H 0.254 0.746 27 H 0.020 0.980 28 H 0.057 0.943 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.402 0.598 32 H 0.153 0.847 33 H 0.167 0.833 34 H 0.172 0.828 35 H 0.376 0.624 36 H 0.023 0.977 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 -11.493 -0.187 13.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.384 4.384 8 H 0.087 0.913 9 N -0.312 5.312 10 C 0.019 3.981 11 C -0.185 4.185 12 C 0.061 3.939 13 H 0.098 0.902 14 N -0.349 5.349 15 C 0.360 3.640 16 O -0.430 6.430 17 C -0.168 4.168 18 C -0.113 4.113 19 C -0.377 4.377 20 S 0.442 5.558 21 C -0.344 4.344 22 C 0.005 3.995 23 H 0.081 0.919 24 O -0.377 6.377 25 C 0.020 3.980 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.239 0.761 32 H 0.170 0.830 33 H 0.185 0.815 34 H 0.189 0.811 35 H 0.223 0.777 36 H 0.040 0.960 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.307 -12.117 -0.879 14.177 hybrid contribution 1.327 1.538 0.805 2.185 sum -5.980 -10.579 -0.074 12.153 Atomic orbital electron populations 1.70018 1.05283 1.25603 1.53879 1.25059 0.95324 0.98527 1.00605 0.86208 0.79457 0.83696 0.77334 1.20161 1.21645 1.21507 1.19260 0.92762 0.84580 1.41767 0.91342 1.43971 1.35688 1.01908 1.49612 1.20928 0.97972 0.86351 0.92885 1.22401 0.96483 1.00342 0.99247 1.20829 0.85753 0.94631 0.92676 0.90192 1.45853 1.30568 1.06405 1.52044 1.17551 0.83756 0.82601 0.80047 1.90744 1.47537 1.53882 1.50801 1.20413 0.98804 0.93307 1.04324 1.21135 0.96818 0.95376 0.97984 1.25478 1.02541 1.01976 1.07666 1.83006 1.28336 0.95961 1.48541 1.25761 1.00342 1.05016 1.03234 1.22948 0.87810 0.95805 0.92906 0.91917 1.86422 1.48256 1.36800 1.66242 1.21389 0.89450 0.98504 0.88673 0.93569 0.96243 0.92406 0.91626 0.91051 0.76086 0.82993 0.81504 0.81078 0.77749 0.95958 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.60 11.20 55.49 0.62 -23.97 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.73 29.59 -169.99 -5.03 15.70 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.25 -6.61 9.58 -15.06 -0.14 -6.75 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -13.74 2.99 -172.32 -0.52 -14.26 16 10 C 0.14 2.95 6.26 -3.72 -0.02 2.93 16 11 C -0.14 -2.61 5.77 -26.61 -0.15 -2.77 16 12 C 0.17 3.01 2.47 -67.89 -0.17 2.85 16 13 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 14 N -0.70 -12.14 4.12 -54.92 -0.23 -12.36 16 15 C 0.58 10.14 7.76 -12.63 -0.10 10.04 16 16 O -0.55 -11.10 16.46 5.24 0.09 -11.02 16 17 C -0.15 -2.22 5.98 -104.63 -0.63 -2.85 16 18 C -0.08 -1.07 10.10 -39.02 -0.39 -1.46 16 19 C -0.24 -2.46 11.12 28.86 0.32 -2.14 16 20 S 0.18 1.78 23.02 -107.50 -2.48 -0.70 16 21 C -0.21 -2.62 10.38 29.93 0.31 -2.31 16 22 C 0.07 1.22 3.36 -26.61 -0.09 1.13 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 24 O -0.57 -9.75 13.21 -35.23 -0.47 -10.21 16 25 C 0.15 3.18 4.63 -3.71 -0.02 3.16 16 26 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 27 H 0.02 0.41 7.74 -51.93 -0.40 0.00 16 28 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 31 H 0.40 6.88 5.36 -40.82 -0.22 6.66 16 32 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 33 H 0.17 1.21 8.06 -52.48 -0.42 0.79 16 34 H 0.17 2.10 7.01 -52.49 -0.37 1.73 16 35 H 0.38 5.09 9.08 45.56 0.41 5.50 16 36 H 0.02 0.51 6.64 -51.93 -0.34 0.16 16 37 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 LS Contribution 318.37 15.07 4.80 4.80 Total: -1.00 -30.40 318.37 -8.08 -38.48 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -3.70 Total: 11.71 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.17 Total: 1.83 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.12 Total: -50.60 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.38 Total: -21.23 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.03 Total: 15.70 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.48 Total: -0.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.40 -8.08 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090041580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.749 kcal (2) G-P(sol) polarization free energy of solvation -30.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds