Wall clock time and date at job start Fri Apr 10 2020 17:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86792 * 120.00157 * 2 1 4 4 H 1.48494 * 109.47481 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.47300 * 300.00206 * 3 2 1 6 6 H 1.48499 * 109.47371 * 59.99841 * 3 2 1 7 7 C 1.38813 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00053 * 163.07572 * 7 2 1 9 9 N 1.36943 * 120.00236 * 343.07999 * 7 2 1 10 10 C 1.46916 * 120.63134 * 151.81159 * 9 7 2 11 11 C 1.53187 * 108.77719 * 126.41520 * 10 9 7 12 12 C 1.53038 * 109.31524 * 54.62999 * 11 10 9 13 13 H 1.08999 * 109.46073 * 178.61429 * 12 11 10 14 14 N 1.46499 * 109.45878 * 58.66188 * 12 11 10 15 15 C 1.34770 * 120.00689 * 84.93111 * 14 12 11 16 16 O 1.21645 * 119.99636 * 0.02562 * 15 14 12 17 17 C 1.47191 * 120.00453 * 179.97438 * 15 14 12 18 18 C 1.44423 * 123.45952 * 179.97438 * 17 15 14 19 19 C 1.32769 * 113.08196 * 180.02562 * 18 17 15 20 20 S 1.75503 * 110.57460 * 0.02562 * 19 18 17 21 21 C 1.36007 * 123.45692 * 359.70693 * 17 15 14 22 22 C 1.53040 * 109.53747 * 298.63612 * 12 11 10 23 23 H 1.08996 * 109.52699 * 301.39479 * 22 12 11 24 24 O 1.42903 * 109.49662 * 181.31551 * 22 12 11 25 25 C 1.46927 * 120.62607 * 331.83180 * 9 7 2 26 26 H 0.96996 * 120.00033 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.58685 * 246.19753 * 10 9 7 28 28 H 1.09005 * 109.59049 * 6.47573 * 10 9 7 29 29 H 1.08998 * 109.50103 * 174.58891 * 11 10 9 30 30 H 1.09005 * 109.49305 * 294.64687 * 11 10 9 31 31 H 0.97008 * 119.99259 * 264.93253 * 14 12 11 32 32 H 1.07995 * 123.46227 * 0.02562 * 18 17 15 33 33 H 1.08006 * 124.71527 * 179.97438 * 19 18 17 34 34 H 1.07996 * 124.59260 * 359.97438 * 21 17 15 35 35 H 0.96693 * 113.99642 * 180.16686 * 24 22 12 36 36 H 1.09003 * 109.58449 * 113.80204 * 25 9 7 37 37 H 1.09000 * 109.59043 * 353.37498 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3701 -2.3623 0.3462 10 6 1.8137 -3.6529 -0.1980 11 6 2.0673 -4.6174 0.9648 12 6 0.8120 -4.7008 1.8362 13 1 0.9814 -5.4053 2.6505 14 7 -0.3174 -5.1580 1.0228 15 6 -0.5189 -6.4765 0.8298 16 8 0.2367 -7.2870 1.3316 17 6 -1.6539 -6.9358 0.0130 18 6 -1.9392 -8.3283 -0.2424 19 6 -3.0112 -8.5088 -1.0046 20 16 -3.7214 -6.9656 -1.4455 21 6 -2.5448 -6.0925 -0.5744 22 6 0.4977 -3.3191 2.4145 23 1 1.3471 -2.9674 3.0000 24 8 -0.6567 -3.4042 3.2525 25 6 0.2262 -2.3399 1.2681 26 1 -0.4850 0.8400 -0.0004 27 1 1.0399 -4.0605 -0.8487 28 1 2.7330 -3.5131 -0.7668 29 1 2.3040 -5.6063 0.5722 30 1 2.9027 -4.2540 1.5632 31 1 -0.9201 -4.5115 0.6229 32 1 -1.3419 -9.1396 0.1466 33 1 -3.3928 -9.4715 -1.3116 34 1 -2.5097 -5.0156 -0.5013 35 1 -0.9157 -2.5625 3.6518 36 1 -0.6770 -2.6404 0.7369 37 1 0.0994 -1.3342 1.6688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090041580.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:41 Heat of formation + Delta-G solvation = -51.239992 kcal Electronic energy + Delta-G solvation = -22202.960344 eV Core-core repulsion = 18878.620265 eV Total energy + Delta-G solvation = -3324.340079 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.35195 -39.55921 -37.68474 -36.88086 -35.70192 -33.77839 -31.76811 -30.71398 -30.10474 -27.27830 -25.95972 -24.10550 -23.54302 -22.71318 -20.48022 -20.21435 -19.16820 -18.63333 -18.12430 -18.03296 -16.87728 -16.60892 -16.12563 -15.95248 -15.53211 -15.45307 -15.03279 -14.61132 -14.30790 -13.95718 -13.94218 -13.68140 -13.52271 -13.37477 -13.25731 -12.87977 -12.70342 -12.68974 -12.15172 -12.06460 -11.99852 -11.84015 -11.29459 -11.02826 -10.88156 -10.60372 -10.14329 -9.96554 -9.33953 -8.72167 -7.91178 -5.37144 -0.21554 0.62709 0.97415 1.02968 1.46420 1.50487 1.59503 2.20028 2.35594 2.49342 3.11967 3.26029 3.63538 3.81398 3.88788 4.02956 4.12266 4.23929 4.33582 4.34098 4.43222 4.45981 4.68685 4.85038 4.87744 4.93914 5.05865 5.13516 5.14951 5.27760 5.30588 5.51204 5.56243 5.64877 6.33953 6.51546 6.81149 7.11185 7.18247 7.78245 8.30574 9.14834 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020333 B = 0.004359 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.767345 B = 6422.216461 C = 6964.445793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.041 4.041 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.294 1.294 6 H -0.289 1.289 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.601 5.601 10 C 0.147 3.853 11 C -0.131 4.131 12 C 0.167 3.833 13 H 0.075 0.925 14 N -0.697 5.697 15 C 0.572 3.428 16 O -0.583 6.583 17 C -0.179 4.179 18 C -0.109 4.109 19 C -0.227 4.227 20 S 0.242 5.758 21 C -0.218 4.218 22 C 0.084 3.916 23 H 0.065 0.935 24 O -0.574 6.574 25 C 0.159 3.841 26 H 0.252 0.748 27 H 0.015 0.985 28 H 0.058 0.942 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.403 0.597 32 H 0.150 0.850 33 H 0.202 0.798 34 H 0.170 0.830 35 H 0.392 0.608 36 H 0.010 0.990 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -12.176 -0.669 14.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.237 4.237 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.221 1.221 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.326 5.326 10 C 0.021 3.979 11 C -0.171 4.171 12 C 0.062 3.938 13 H 0.093 0.907 14 N -0.347 5.347 15 C 0.359 3.641 16 O -0.465 6.465 17 C -0.198 4.198 18 C -0.137 4.137 19 C -0.362 4.362 20 S 0.508 5.492 21 C -0.357 4.357 22 C 0.023 3.977 23 H 0.083 0.917 24 O -0.381 6.381 25 C 0.032 3.968 26 H 0.061 0.939 27 H 0.033 0.967 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.240 0.760 32 H 0.167 0.833 33 H 0.219 0.781 34 H 0.188 0.812 35 H 0.241 0.759 36 H 0.028 0.972 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.104 -12.805 -1.358 15.215 hybrid contribution 1.462 1.721 0.886 2.426 sum -6.642 -11.084 -0.472 12.931 Atomic orbital electron populations 1.70140 1.06397 1.25946 1.54994 1.25703 0.96021 1.01143 1.00842 0.85268 0.78653 0.80075 0.76778 1.19397 1.22110 1.21512 1.19523 0.92953 0.85719 1.41359 0.91518 1.44158 1.35869 1.02247 1.50298 1.20963 0.97656 0.85605 0.93658 1.22251 0.96735 0.99804 0.98353 1.20761 0.86165 0.94173 0.92718 0.90689 1.45826 1.30325 1.06638 1.51913 1.18019 0.84172 0.82115 0.79745 1.90708 1.48979 1.54484 1.52342 1.20336 0.98911 0.94725 1.05795 1.21149 0.98341 0.94426 0.99816 1.25899 1.01041 1.03700 1.05528 1.82826 1.25757 0.94651 1.46009 1.25933 1.01043 1.05319 1.03374 1.22613 0.88290 0.94966 0.91864 0.91693 1.86402 1.47655 1.38167 1.65849 1.21197 0.88595 0.97819 0.89181 0.93914 0.96702 0.92383 0.91140 0.90339 0.75984 0.83277 0.78138 0.81229 0.75899 0.97185 0.91524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.06 11.20 21.65 0.24 -50.82 16 2 C -0.04 -2.15 4.92 84.86 0.42 -1.73 16 3 Si 0.96 42.63 29.59 68.60 2.03 44.66 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 5 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 6 H -0.29 -12.67 7.11 99.48 0.71 -11.97 16 7 C -0.27 -13.81 9.58 84.03 0.81 -13.01 16 8 H 0.07 3.43 7.88 -2.91 -0.02 3.40 16 9 N -0.60 -28.23 2.99 -699.10 -2.09 -30.32 16 10 C 0.15 5.97 6.26 86.36 0.54 6.52 16 11 C -0.13 -4.69 5.77 30.67 0.18 -4.52 16 12 C 0.17 6.04 2.47 45.02 0.11 6.15 16 13 H 0.08 2.84 7.58 -2.39 -0.02 2.82 16 14 N -0.70 -24.38 4.12 -445.90 -1.84 -26.22 16 15 C 0.57 20.37 7.76 86.60 0.67 21.04 16 16 O -0.58 -23.89 16.46 -4.17 -0.07 -23.96 16 17 C -0.18 -5.23 5.98 -19.87 -0.12 -5.35 16 18 C -0.11 -2.65 10.10 22.67 0.23 -2.42 16 19 C -0.23 -3.96 11.12 66.64 0.74 -3.22 16 20 S 0.24 4.20 23.02 -56.49 -1.30 2.89 16 21 C -0.22 -5.35 10.38 67.30 0.70 -4.66 16 22 C 0.08 3.06 3.36 30.67 0.10 3.16 16 23 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 24 O -0.57 -19.12 13.21 -148.98 -1.97 -21.09 16 25 C 0.16 6.94 4.63 86.36 0.40 7.34 16 26 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 27 H 0.02 0.62 7.74 -2.38 -0.02 0.61 16 28 H 0.06 2.33 7.93 -2.38 -0.02 2.31 16 29 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.08 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.40 13.94 5.36 -92.70 -0.50 13.45 16 32 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.20 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.17 4.10 7.01 -2.91 -0.02 4.08 16 35 H 0.39 10.25 9.08 -74.06 -0.67 9.58 16 36 H 0.01 0.47 6.64 -2.39 -0.02 0.45 16 37 H 0.07 3.28 6.06 -2.39 -0.01 3.26 16 Total: -1.00 -64.75 318.37 -0.27 -65.02 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.05 Total: 30.54 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 4.78 Total: 9.30 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -3.69 Total: -107.37 kcal Atomic # 8 Polarization: -43.01 SS G_CDS: -2.04 Total: -45.05 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Atomic # 16 Polarization: 4.20 SS G_CDS: -1.30 Total: 2.89 kcal Total: -64.75 -0.27 -65.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090041580.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.784 kcal (2) G-P(sol) polarization free energy of solvation -64.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds