Wall clock time and date at job start Fri Apr 10 2020 17:40:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48496 * 109.47460 * 270.00242 * 3 2 1 5 5 H 1.48503 * 109.46942 * 30.00216 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99966 * 3 2 1 7 7 C 1.38817 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99671 * 163.08480 * 7 2 1 9 9 N 1.36935 * 119.99903 * 343.08164 * 7 2 1 10 10 C 1.46928 * 120.62713 * 151.83047 * 9 7 2 11 11 C 1.53198 * 108.77352 * 126.37380 * 10 9 7 12 12 C 1.53041 * 109.31346 * 54.63230 * 11 10 9 13 13 H 1.08994 * 109.45820 * 58.64247 * 12 11 10 14 14 N 1.46506 * 109.45606 * 178.61688 * 12 11 10 15 15 C 1.34770 * 119.99532 * 275.02262 * 14 12 11 16 16 O 1.21704 * 120.00571 * 0.02562 * 15 14 12 17 17 C 1.46586 * 119.99736 * 179.72789 * 15 14 12 18 18 C 1.36651 * 125.45855 * 179.97438 * 17 15 14 19 19 C 1.37480 * 113.29323 * 179.80092 * 18 17 15 20 20 C 1.33818 * 115.10249 * 0.49253 * 19 18 17 21 21 S 1.70621 * 110.95490 * 359.72808 * 20 19 18 22 22 C 1.53039 * 109.52660 * 298.62737 * 12 11 10 23 23 H 1.08994 * 109.50303 * 301.42407 * 22 12 11 24 24 O 1.42901 * 109.49475 * 181.32281 * 22 12 11 25 25 C 1.46922 * 120.63457 * 331.80917 * 9 7 2 26 26 H 0.96996 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.59038 * 6.58613 * 10 9 7 28 28 H 1.08997 * 109.58892 * 246.15696 * 10 9 7 29 29 H 1.09003 * 109.49001 * 294.68093 * 11 10 9 30 30 H 1.09001 * 109.52312 * 174.60658 * 11 10 9 31 31 H 0.96998 * 119.99745 * 95.03258 * 14 12 11 32 32 H 1.07990 * 123.35386 * 359.97438 * 18 17 15 33 33 H 1.07994 * 122.44687 * 180.21901 * 19 18 17 34 34 H 1.07996 * 124.52605 * 179.74783 * 20 19 18 35 35 H 0.96703 * 113.99857 * 180.02562 * 24 22 12 36 36 H 1.08999 * 109.58333 * 353.42044 * 25 9 7 37 37 H 1.09007 * 109.58788 * 113.69684 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2222 -0.2727 9 7 1.3700 -2.3626 0.3441 10 6 1.8139 -3.6527 -0.2011 11 6 2.0682 -4.6178 0.9612 12 6 0.8132 -4.7021 1.8329 13 1 -0.0272 -5.0419 1.2277 14 7 1.0416 -5.6495 2.9269 15 6 0.8376 -6.9671 2.7307 16 8 0.4642 -7.3701 1.6447 17 6 1.0719 -7.9157 3.8234 18 6 0.9009 -9.2694 3.7484 19 6 1.1973 -9.9207 4.9222 20 6 1.5874 -9.1288 5.9280 21 16 1.6106 -7.4932 5.4430 22 6 0.4988 -3.3208 2.4120 23 1 1.3488 -2.9694 2.9969 24 8 -0.6552 -3.4065 3.2505 25 6 0.2264 -2.3412 1.2662 26 1 -0.4850 0.8400 -0.0004 27 1 2.7344 -3.5127 -0.7678 28 1 1.0402 -4.0602 -0.8517 29 1 2.9033 -4.2540 1.5599 30 1 2.3056 -5.6065 0.5685 31 1 1.3394 -5.3283 3.7923 32 1 0.5689 -9.7773 2.8551 33 1 1.1168 -10.9926 5.0264 34 1 1.8524 -9.4784 6.9148 35 1 -0.9129 -2.5654 3.6520 36 1 0.0994 -1.3358 1.6675 37 1 -0.6774 -2.6393 0.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090042748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:44 Heat of formation + Delta-G solvation = -29.675338 kcal Electronic energy + Delta-G solvation = -21690.289440 eV Core-core repulsion = 18366.884474 eV Total energy + Delta-G solvation = -3323.404966 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.84412 -38.21705 -37.29616 -35.28089 -34.35559 -32.25297 -30.34466 -29.18565 -28.78476 -25.67030 -24.56562 -22.59096 -21.98881 -20.89189 -19.83223 -19.23322 -18.41498 -16.94800 -16.62225 -16.19013 -15.76890 -15.28277 -14.88791 -14.72167 -13.93306 -13.76455 -13.55887 -13.37281 -13.06170 -12.93494 -12.67600 -12.42585 -12.21453 -11.98044 -11.68877 -11.22825 -11.16238 -10.84784 -10.78953 -10.42943 -10.23664 -10.05709 -9.98370 -9.58242 -9.38094 -9.09898 -8.82033 -8.73542 -8.54291 -6.78701 -5.88228 -3.32004 0.37638 1.30139 1.70472 2.27002 3.27583 3.30474 3.32904 3.39633 3.41492 4.40080 4.56054 4.73531 4.89490 5.12657 5.28454 5.29080 5.37689 5.44148 5.58044 5.76394 5.89769 5.97736 5.99554 6.07804 6.13323 6.19075 6.42428 6.45510 6.69540 6.79410 6.90106 7.10504 7.44013 7.64416 7.71680 8.08406 8.31365 8.35498 9.10179 9.72929 10.29399 11.20316 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.003505 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.136693 B = 7985.768538 C = 8191.707944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.257 4.257 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.163 3.837 13 H 0.091 0.909 14 N -0.709 5.709 15 C 0.586 3.414 16 O -0.532 6.532 17 C -0.255 4.255 18 C -0.064 4.064 19 C -0.149 4.149 20 C -0.237 4.237 21 S 0.201 5.799 22 C 0.072 3.928 23 H 0.052 0.948 24 O -0.573 6.573 25 C 0.149 3.851 26 H 0.255 0.745 27 H 0.061 0.939 28 H 0.025 0.975 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.394 0.606 32 H 0.153 0.847 33 H 0.144 0.856 34 H 0.167 0.833 35 H 0.376 0.624 36 H 0.094 0.906 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.094 -14.527 13.067 19.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.386 4.386 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.059 3.941 13 H 0.109 0.891 14 N -0.358 5.358 15 C 0.371 3.629 16 O -0.411 6.411 17 C -0.375 4.375 18 C -0.097 4.097 19 C -0.180 4.180 20 C -0.375 4.375 21 S 0.468 5.532 22 C 0.011 3.989 23 H 0.070 0.930 24 O -0.377 6.377 25 C 0.022 3.978 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.228 0.772 32 H 0.171 0.829 33 H 0.162 0.838 34 H 0.185 0.815 35 H 0.223 0.777 36 H 0.112 0.888 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.111 -13.904 12.834 19.176 hybrid contribution 0.165 0.137 0.033 0.217 sum 3.277 -13.767 12.867 19.126 Atomic orbital electron populations 1.70021 1.05277 1.25714 1.53551 1.25090 0.95318 0.98556 1.00610 0.86285 0.79135 0.83425 0.77857 1.21266 1.21517 1.20419 1.19194 0.92697 0.84560 1.42152 0.91382 1.44005 1.35707 1.01957 1.49632 1.20944 0.98317 0.86272 0.92637 1.22435 0.96571 1.00358 0.98671 1.21057 0.98897 0.86767 0.87371 0.89133 1.46001 1.68189 1.05951 1.15692 1.16949 0.77654 0.81834 0.86415 1.90826 1.46915 1.78295 1.25024 1.24824 1.15450 0.98451 0.98824 1.20813 0.97709 0.91779 0.99406 1.20045 1.03980 1.01635 0.92348 1.25310 1.08966 0.98561 1.04689 1.83095 1.61300 1.05612 1.03237 1.22986 0.87143 0.95350 0.93437 0.92981 1.86420 1.48345 1.36861 1.66112 1.21413 0.89888 0.98069 0.88478 0.93470 0.92023 0.95752 0.91941 0.91697 0.77223 0.82900 0.83837 0.81523 0.77686 0.88798 0.95131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.35 11.20 55.49 0.62 -24.73 16 2 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 3 Si 0.90 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.35 2.99 -172.32 -0.52 -14.87 16 10 C 0.15 3.06 6.52 -3.71 -0.02 3.03 16 11 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 12 C 0.16 2.99 2.12 -67.89 -0.14 2.84 16 13 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 14 N -0.71 -11.23 4.91 -55.10 -0.27 -11.51 16 15 C 0.59 9.68 7.75 -12.90 -0.10 9.58 16 16 O -0.53 -10.57 16.50 5.19 0.09 -10.49 16 17 C -0.25 -3.35 6.45 -36.79 -0.24 -3.59 16 18 C -0.06 -0.75 10.01 -40.43 -0.40 -1.15 16 19 C -0.15 -1.35 10.15 -41.41 -0.42 -1.77 16 20 C -0.24 -1.98 10.92 29.18 0.32 -1.67 16 21 S 0.20 1.95 22.16 -107.50 -2.38 -0.43 16 22 C 0.07 1.34 3.14 -26.61 -0.08 1.25 16 23 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 24 O -0.57 -9.78 13.16 -35.23 -0.46 -10.24 16 25 C 0.15 3.41 4.93 -3.71 -0.02 3.39 16 26 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 27 H 0.06 1.25 7.93 -51.93 -0.41 0.84 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.39 5.39 7.72 -40.82 -0.31 5.08 16 32 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.38 5.10 9.08 45.56 0.41 5.51 16 36 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.41 15.07 4.87 4.87 Total: -1.00 -31.56 323.41 -8.53 -40.08 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -3.95 Total: 9.11 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.49 Total: 2.27 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: -0.17 Total: -51.10 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.38 Total: -20.73 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.38 Total: -0.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.56 -8.53 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090042748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.408 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds