Wall clock time and date at job start Fri Apr 10 2020 17:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48496 * 109.47460 * 270.00242 * 3 2 1 5 5 H 1.48503 * 109.46942 * 30.00216 * 3 2 1 6 6 H 1.48498 * 109.47381 * 149.99966 * 3 2 1 7 7 C 1.38817 * 119.99955 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99671 * 163.08480 * 7 2 1 9 9 N 1.36935 * 119.99903 * 343.08164 * 7 2 1 10 10 C 1.46928 * 120.62713 * 151.83047 * 9 7 2 11 11 C 1.53198 * 108.77352 * 126.37380 * 10 9 7 12 12 C 1.53041 * 109.31346 * 54.63230 * 11 10 9 13 13 H 1.08994 * 109.45820 * 58.64247 * 12 11 10 14 14 N 1.46506 * 109.45606 * 178.61688 * 12 11 10 15 15 C 1.34770 * 119.99532 * 275.02262 * 14 12 11 16 16 O 1.21704 * 120.00571 * 0.02562 * 15 14 12 17 17 C 1.46586 * 119.99736 * 179.72789 * 15 14 12 18 18 C 1.36651 * 125.45855 * 179.97438 * 17 15 14 19 19 C 1.37480 * 113.29323 * 179.80092 * 18 17 15 20 20 C 1.33818 * 115.10249 * 0.49253 * 19 18 17 21 21 S 1.70621 * 110.95490 * 359.72808 * 20 19 18 22 22 C 1.53039 * 109.52660 * 298.62737 * 12 11 10 23 23 H 1.08994 * 109.50303 * 301.42407 * 22 12 11 24 24 O 1.42901 * 109.49475 * 181.32281 * 22 12 11 25 25 C 1.46922 * 120.63457 * 331.80917 * 9 7 2 26 26 H 0.96996 * 120.00221 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.59038 * 6.58613 * 10 9 7 28 28 H 1.08997 * 109.58892 * 246.15696 * 10 9 7 29 29 H 1.09003 * 109.49001 * 294.68093 * 11 10 9 30 30 H 1.09001 * 109.52312 * 174.60658 * 11 10 9 31 31 H 0.96998 * 119.99745 * 95.03258 * 14 12 11 32 32 H 1.07990 * 123.35386 * 359.97438 * 18 17 15 33 33 H 1.07994 * 122.44687 * 180.21901 * 19 18 17 34 34 H 1.07996 * 124.52605 * 179.74783 * 20 19 18 35 35 H 0.96703 * 113.99857 * 180.02562 * 24 22 12 36 36 H 1.08999 * 109.58333 * 353.42044 * 25 9 7 37 37 H 1.09007 * 109.58788 * 113.69684 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0551 -1.2222 -0.2727 9 7 1.3700 -2.3626 0.3441 10 6 1.8139 -3.6527 -0.2011 11 6 2.0682 -4.6178 0.9612 12 6 0.8132 -4.7021 1.8329 13 1 -0.0272 -5.0419 1.2277 14 7 1.0416 -5.6495 2.9269 15 6 0.8376 -6.9671 2.7307 16 8 0.4642 -7.3701 1.6447 17 6 1.0719 -7.9157 3.8234 18 6 0.9009 -9.2694 3.7484 19 6 1.1973 -9.9207 4.9222 20 6 1.5874 -9.1288 5.9280 21 16 1.6106 -7.4932 5.4430 22 6 0.4988 -3.3208 2.4120 23 1 1.3488 -2.9694 2.9969 24 8 -0.6552 -3.4065 3.2505 25 6 0.2264 -2.3412 1.2662 26 1 -0.4850 0.8400 -0.0004 27 1 2.7344 -3.5127 -0.7678 28 1 1.0402 -4.0602 -0.8517 29 1 2.9033 -4.2540 1.5599 30 1 2.3056 -5.6065 0.5685 31 1 1.3394 -5.3283 3.7923 32 1 0.5689 -9.7773 2.8551 33 1 1.1168 -10.9926 5.0264 34 1 1.8524 -9.4784 6.9148 35 1 -0.9129 -2.5654 3.6520 36 1 0.0994 -1.3358 1.6675 37 1 -0.6774 -2.6393 0.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090042748.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:43 Heat of formation + Delta-G solvation = -53.143500 kcal Electronic energy + Delta-G solvation = -21691.307096 eV Core-core repulsion = 18366.884474 eV Total energy + Delta-G solvation = -3324.422622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18500 -39.58583 -38.30961 -36.91363 -35.86896 -34.02899 -31.74476 -30.69194 -30.22406 -27.23827 -25.78104 -24.17787 -23.55957 -22.18194 -21.34772 -20.23375 -19.59138 -18.73469 -18.13972 -17.49522 -16.83589 -16.75114 -16.26009 -16.09296 -15.61222 -15.36234 -15.07592 -14.75123 -14.45826 -13.96874 -13.83087 -13.67633 -13.52327 -13.39609 -13.21746 -13.03886 -12.65950 -12.55089 -12.12115 -12.04523 -11.93940 -11.88660 -11.47162 -11.16367 -10.95349 -10.61245 -10.24991 -9.81899 -9.51962 -8.76922 -7.91184 -5.38801 -0.48255 0.49864 0.95539 1.43219 1.48839 1.50524 1.60367 2.02304 2.16131 2.49766 3.08376 3.26466 3.60835 3.74510 3.91026 4.01798 4.15691 4.28100 4.36609 4.38766 4.42647 4.56290 4.64817 4.84227 4.89956 5.02085 5.04313 5.13733 5.23578 5.30353 5.36049 5.37847 5.54953 5.63613 6.32789 6.40991 6.80834 7.07540 7.09489 7.76489 8.30078 9.15764 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.033006 B = 0.003505 C = 0.003417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 848.136693 B = 7985.768538 C = 8191.707944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.047 4.047 3 Si 0.971 3.029 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.267 1.267 7 C -0.268 4.268 8 H 0.073 0.927 9 N -0.604 5.604 10 C 0.142 3.858 11 C -0.124 4.124 12 C 0.169 3.831 13 H 0.058 0.942 14 N -0.701 5.701 15 C 0.584 3.416 16 O -0.578 6.578 17 C -0.302 4.302 18 C -0.061 4.061 19 C -0.159 4.159 20 C -0.216 4.216 21 S 0.232 5.768 22 C 0.092 3.908 23 H 0.068 0.932 24 O -0.574 6.574 25 C 0.158 3.842 26 H 0.252 0.748 27 H 0.069 0.931 28 H 0.009 0.991 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.407 0.593 32 H 0.146 0.854 33 H 0.172 0.828 34 H 0.203 0.797 35 H 0.393 0.607 36 H 0.073 0.927 37 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.760 -15.529 15.784 22.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.243 4.243 3 Si 0.798 3.202 4 H -0.214 1.214 5 H -0.217 1.217 6 H -0.191 1.191 7 C -0.398 4.398 8 H 0.091 0.909 9 N -0.329 5.329 10 C 0.016 3.984 11 C -0.164 4.164 12 C 0.064 3.936 13 H 0.077 0.923 14 N -0.350 5.350 15 C 0.372 3.628 16 O -0.460 6.460 17 C -0.422 4.422 18 C -0.095 4.095 19 C -0.189 4.189 20 C -0.354 4.354 21 S 0.499 5.501 22 C 0.031 3.969 23 H 0.086 0.914 24 O -0.381 6.381 25 C 0.031 3.969 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.027 0.973 29 H 0.094 0.906 30 H 0.089 0.911 31 H 0.243 0.757 32 H 0.163 0.837 33 H 0.189 0.811 34 H 0.220 0.780 35 H 0.243 0.757 36 H 0.091 0.909 37 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 4.797 -14.911 15.597 22.104 hybrid contribution -0.386 0.353 -0.767 0.929 sum 4.411 -14.557 14.830 21.244 Atomic orbital electron populations 1.70181 1.06744 1.26138 1.54927 1.25855 0.96033 1.01643 1.00739 0.85238 0.78188 0.79227 0.77523 1.21441 1.21748 1.19144 1.19550 0.93101 0.85491 1.41630 0.90925 1.44249 1.35738 1.02538 1.50367 1.21034 0.97988 0.85636 0.93711 1.22226 0.96825 0.99712 0.97616 1.20742 0.97849 0.87080 0.87888 0.92347 1.45763 1.68189 1.05586 1.15505 1.17420 0.76444 0.82099 0.86791 1.90791 1.49032 1.78983 1.27186 1.24562 1.19249 0.98327 1.00081 1.21038 0.96636 0.91515 1.00324 1.20245 1.04190 1.03124 0.91319 1.25812 1.06202 0.97557 1.05835 1.82955 1.60248 1.06531 1.00348 1.22562 0.88060 0.94236 0.92022 0.91427 1.86401 1.47818 1.38264 1.65597 1.21214 0.88409 0.97993 0.89318 0.93884 0.91274 0.97257 0.90554 0.91113 0.75710 0.83669 0.81091 0.77979 0.75733 0.90908 0.98609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.81 11.20 21.65 0.24 -53.57 16 2 C -0.05 -2.54 4.92 84.86 0.42 -2.12 16 3 Si 0.97 43.20 29.59 68.60 2.03 45.23 16 4 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.27 -14.30 9.58 84.03 0.81 -13.50 16 8 H 0.07 3.74 7.88 -2.91 -0.02 3.72 16 9 N -0.60 -29.98 2.99 -699.09 -2.09 -32.07 16 10 C 0.14 6.10 6.52 86.36 0.56 6.66 16 11 C -0.12 -4.48 5.65 30.67 0.17 -4.30 16 12 C 0.17 6.27 2.12 45.02 0.10 6.37 16 13 H 0.06 2.56 7.58 -2.39 -0.02 2.55 16 14 N -0.70 -21.85 4.91 -446.46 -2.19 -24.04 16 15 C 0.58 19.40 7.75 86.42 0.67 20.07 16 16 O -0.58 -23.79 16.50 -4.36 -0.07 -23.86 16 17 C -0.30 -7.64 6.45 24.08 0.16 -7.48 16 18 C -0.06 -1.33 10.01 21.72 0.22 -1.12 16 19 C -0.16 -2.36 10.15 21.09 0.21 -2.15 16 20 C -0.22 -2.70 10.92 66.81 0.73 -1.97 16 21 S 0.23 3.85 22.16 -56.49 -1.25 2.60 16 22 C 0.09 3.43 3.14 30.67 0.10 3.52 16 23 H 0.07 2.35 8.14 -2.39 -0.02 2.34 16 24 O -0.57 -19.27 13.16 -148.98 -1.96 -21.23 16 25 C 0.16 7.46 4.93 86.36 0.43 7.89 16 26 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 27 H 0.07 2.81 7.93 -2.39 -0.02 2.79 16 28 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.07 2.49 8.14 -2.39 -0.02 2.48 16 31 H 0.41 10.50 7.72 -92.71 -0.72 9.79 16 32 H 0.15 3.30 8.06 -2.92 -0.02 3.28 16 33 H 0.17 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 35 H 0.39 10.29 9.08 -74.06 -0.67 9.62 16 36 H 0.07 3.74 6.06 -2.39 -0.01 3.73 16 37 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 Total: -1.00 -70.08 323.41 -1.02 -71.09 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.28 Total: 23.99 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 4.56 Total: 11.86 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.04 Total: -109.68 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -2.03 Total: -45.09 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.25 Total: 2.60 kcal Total: -70.08 -1.02 -71.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090042748.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.950 kcal (2) G-P(sol) polarization free energy of solvation -70.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds