Wall clock time and date at job start Fri Apr 10 2020 17:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 110.64370 * 2 1 4 4 C 1.54327 * 110.72129 * 236.85858 * 2 1 3 5 5 N 1.47022 * 107.26914 * 219.44390 * 4 2 1 6 6 C 1.36938 * 125.64324 * 178.90351 * 5 4 2 7 7 H 1.08001 * 119.99751 * 174.87683 * 6 5 4 8 8 C 1.38803 * 120.00306 * 354.87602 * 6 5 4 9 9 N 1.31618 * 120.00128 * 7.06528 * 8 6 5 10 10 Si 1.86800 * 120.00281 * 187.06176 * 8 6 5 11 11 H 1.48498 * 109.47137 * 94.98746 * 10 8 6 12 12 H 1.48496 * 109.47607 * 214.98924 * 10 8 6 13 13 H 1.48504 * 109.47031 * 334.99199 * 10 8 6 14 14 C 1.47420 * 108.70668 * 358.93987 * 5 4 2 15 15 C 1.54908 * 104.83146 * 24.12732 * 14 5 4 16 16 H 1.09003 * 111.00465 * 81.06847 * 15 14 5 17 17 C 1.53000 * 111.00681 * 204.91923 * 15 14 5 18 18 N 1.46508 * 109.46903 * 287.19469 * 17 15 14 19 19 C 1.34777 * 119.99804 * 179.97438 * 18 17 15 20 20 O 1.21605 * 120.00314 * 0.02562 * 19 18 17 21 21 C 1.47450 * 119.99560 * 180.02562 * 19 18 17 22 22 C 1.37989 * 124.15255 * 180.02562 * 21 19 18 23 23 S 1.72100 * 104.03243 * 179.97438 * 22 21 19 24 24 N 1.56402 * 96.15564 * 359.97438 * 23 22 21 25 25 N 1.27419 * 109.87622 * 359.75148 * 24 23 22 26 26 H 1.09000 * 109.46780 * 181.68734 * 1 2 3 27 27 H 1.09004 * 109.47114 * 301.68948 * 1 2 3 28 28 H 1.09002 * 109.46934 * 61.68424 * 1 2 3 29 29 H 1.08997 * 109.87971 * 338.86036 * 4 2 1 30 30 H 1.09003 * 109.88228 * 99.86957 * 4 2 1 31 31 H 0.97001 * 120.00287 * 179.97438 * 9 8 6 32 32 H 1.08998 * 110.37255 * 142.96688 * 14 5 4 33 33 H 1.09002 * 110.36941 * 265.29150 * 14 5 4 34 34 H 1.09000 * 109.47361 * 47.19562 * 17 15 14 35 35 H 1.08997 * 109.47508 * 167.19888 * 17 15 14 36 36 H 0.96996 * 119.99528 * 0.02562 * 18 17 15 37 37 H 1.08002 * 127.98020 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2445 -1.5494 -0.7416 6 6 4.0035 -2.3954 -1.5055 7 1 4.8934 -2.8455 -1.0909 8 6 3.6290 -2.6746 -2.8126 9 7 2.6274 -2.0224 -3.3638 10 14 4.5467 -3.9757 -3.7896 11 1 3.8304 -5.2720 -3.6823 12 1 4.6178 -3.5659 -5.2151 13 1 5.9214 -4.1235 -3.2478 14 6 3.4633 -1.2509 0.6854 15 6 2.0790 -0.7975 1.2124 16 1 1.4452 -1.6560 1.4347 17 6 2.2278 0.1039 2.4397 18 7 2.6328 -0.7040 3.5928 19 6 2.8259 -0.1186 4.7913 20 8 2.6635 1.0801 4.9158 21 6 3.2341 -0.9317 5.9517 22 6 3.4545 -0.4228 7.2152 23 16 3.8980 -1.7994 8.1480 24 7 3.7848 -2.8356 6.9821 25 7 3.4284 -2.2451 5.9107 26 1 -0.3633 -1.0272 0.0303 27 1 -0.3633 0.5399 0.8745 28 1 -0.3633 0.4875 -0.9047 29 1 1.3130 -1.4731 -1.5800 30 1 2.3716 -0.0991 -1.9990 31 1 2.3659 -2.2172 -4.2773 32 1 3.7961 -2.1446 1.2133 33 1 4.1932 -0.4492 0.7977 34 1 2.9854 0.8627 2.2436 35 1 1.2749 0.5884 2.6524 36 1 2.7627 -1.6601 3.4934 37 1 3.3684 0.6027 7.5430 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092863573.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:56 Heat of formation + Delta-G solvation = 31.913551 kcal Electronic energy + Delta-G solvation = -21214.664895 eV Core-core repulsion = 17926.223375 eV Total energy + Delta-G solvation = -3288.441520 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.13580 -40.54011 -39.49629 -36.14662 -34.71214 -33.23046 -32.54527 -30.89530 -28.29014 -27.76651 -26.75165 -25.11788 -23.79124 -21.95939 -21.63917 -21.10252 -20.06204 -18.80435 -17.96024 -17.20637 -17.05647 -16.89713 -16.39421 -16.13527 -15.73472 -15.59162 -14.90308 -14.68316 -14.42330 -14.16305 -13.65341 -13.44283 -13.29654 -13.09940 -13.03481 -12.87049 -12.69415 -12.40947 -11.95074 -11.86262 -11.66998 -11.54342 -11.38010 -11.30035 -11.15973 -11.14625 -10.89482 -10.68366 -10.17428 -8.88645 -7.86000 -5.20202 -0.92352 -0.02899 0.32241 0.55220 1.45157 1.47014 1.55783 2.00508 2.04006 2.49113 2.75521 3.31454 3.59736 3.63851 3.74787 3.90301 3.92640 3.96226 4.35545 4.38561 4.50705 4.60912 4.74397 4.79079 4.85642 4.96757 5.08823 5.13446 5.28291 5.37198 5.45211 5.48606 5.72322 5.82775 6.20569 6.22366 6.54522 6.95522 7.10944 7.78372 8.43164 9.24607 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.020352 B = 0.003320 C = 0.002940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.459182 B = 8432.264469 C = 9520.818181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.190 3.810 5 N -0.629 5.629 6 C -0.245 4.245 7 H 0.080 0.920 8 C -0.064 4.064 9 N -0.948 5.948 10 Si 0.976 3.024 11 H -0.286 1.286 12 H -0.294 1.294 13 H -0.269 1.269 14 C 0.136 3.864 15 C -0.092 4.092 16 H 0.086 0.914 17 C 0.143 3.857 18 N -0.701 5.701 19 C 0.603 3.397 20 O -0.556 6.556 21 C -0.046 4.046 22 C -0.234 4.234 23 S 0.564 5.436 24 N -0.334 5.334 25 N -0.237 5.237 26 H 0.047 0.953 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.017 0.983 30 H -0.001 1.001 31 H 0.247 0.753 32 H 0.042 0.958 33 H 0.020 0.980 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.415 0.585 37 H 0.232 0.768 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 4.085 25.329 25.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.098 0.902 4 C 0.065 3.935 5 N -0.355 5.355 6 C -0.374 4.374 7 H 0.098 0.902 8 C -0.257 4.257 9 N -0.597 5.597 10 Si 0.804 3.196 11 H -0.213 1.213 12 H -0.221 1.221 13 H -0.194 1.194 14 C 0.011 3.989 15 C -0.112 4.112 16 H 0.105 0.895 17 C 0.020 3.980 18 N -0.351 5.351 19 C 0.386 3.614 20 O -0.434 6.434 21 C -0.194 4.194 22 C -0.391 4.391 23 S 0.699 5.301 24 N -0.315 5.315 25 N -0.107 5.107 26 H 0.066 0.934 27 H 0.097 0.903 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.017 0.983 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.251 0.749 37 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -0.794 3.082 25.786 25.981 hybrid contribution 0.200 0.143 -2.119 2.133 sum -0.595 3.226 23.667 23.893 Atomic orbital electron populations 1.21650 0.92913 1.01685 1.02281 1.22310 0.97024 0.98663 0.93843 0.90224 1.21008 0.88150 0.91934 0.92404 1.44788 1.32832 1.51391 1.06512 1.19447 1.04929 1.18632 0.94400 0.90242 1.25640 0.99795 1.02003 0.98269 1.70195 1.31763 1.43979 1.13723 0.85096 0.78218 0.78785 0.77471 1.21341 1.22093 1.19373 1.21770 0.95239 0.97416 0.84465 1.22487 0.96984 0.98392 0.93318 0.89525 1.21334 1.01180 0.92913 0.82613 1.45911 1.67564 1.13190 1.08463 1.16832 0.77095 0.85834 0.81688 1.90813 1.53416 1.14483 1.84678 1.22552 1.09440 0.90406 0.96979 1.29296 1.02885 1.11023 0.95888 1.81136 1.43360 0.88349 1.17242 1.78325 1.22876 1.28881 1.01432 1.71588 1.12558 1.07519 1.18985 0.93414 0.90302 0.92745 0.96449 0.98253 0.94396 0.93982 0.96250 0.91291 0.89531 0.74884 0.75178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.74 9.13 71.98 0.66 -3.09 16 2 C -0.10 -3.49 3.01 -9.60 -0.03 -3.51 16 3 H 0.08 2.65 8.04 -2.39 -0.02 2.64 16 4 C 0.19 9.42 4.98 86.73 0.43 9.85 16 5 N -0.63 -32.84 3.39 -692.00 -2.35 -35.19 16 6 C -0.25 -14.05 10.26 84.03 0.86 -13.19 16 7 H 0.08 4.38 7.84 -2.91 -0.02 4.36 16 8 C -0.06 -3.70 5.48 84.86 0.46 -3.24 16 9 N -0.95 -57.83 10.36 21.65 0.22 -57.60 16 10 Si 0.98 46.58 29.56 68.60 2.03 48.61 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 12 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 14 C 0.14 5.53 6.65 86.86 0.58 6.11 16 15 C -0.09 -2.97 2.49 -9.40 -0.02 -2.99 16 16 H 0.09 2.76 8.04 -2.39 -0.02 2.74 16 17 C 0.14 3.82 5.14 86.38 0.44 4.26 16 18 N -0.70 -18.02 5.50 -466.33 -2.56 -20.59 16 19 C 0.60 15.72 7.81 86.67 0.68 16.40 16 20 O -0.56 -16.75 16.80 -4.05 -0.07 -16.82 16 21 C -0.05 -1.00 6.87 41.36 0.28 -0.71 16 22 C -0.23 -3.17 11.21 67.76 0.76 -2.41 16 23 S 0.56 5.63 23.38 -56.49 -1.32 4.31 16 24 N -0.33 -6.78 12.49 37.02 0.46 -6.32 16 25 N -0.24 -5.66 11.24 -50.34 -0.57 -6.22 16 26 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 27 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.02 0.96 6.98 -2.39 -0.02 0.94 16 30 H 0.00 -0.04 7.61 -2.39 -0.02 -0.06 16 31 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 32 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.02 0.80 7.91 -2.39 -0.02 0.78 16 34 H 0.07 1.94 7.96 -2.39 -0.02 1.92 16 35 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 10.41 8.06 -92.71 -0.75 9.66 16 37 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -73.98 326.56 1.30 -72.68 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.35 Total: 9.66 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.11 Total: 7.48 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.79 Total: -125.92 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.07 Total: -16.82 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 16 Polarization: 5.63 SS G_CDS: -1.32 Total: 4.31 kcal Total: -73.98 1.30 -72.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092863573.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.593 kcal (2) G-P(sol) polarization free energy of solvation -73.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds