Wall clock time and date at job start Fri Apr 10 2020 17:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38627 * 120.39756 * 2 1 4 4 C 1.38587 * 118.55913 * 179.97438 * 3 2 1 5 5 N 1.32293 * 119.19423 * 359.97438 * 4 3 2 6 6 C 1.32479 * 120.74171 * 0.02562 * 5 4 3 7 7 N 1.38411 * 119.21653 * 180.02562 * 6 5 4 8 8 C 1.46502 * 119.99843 * 359.97438 * 7 6 5 9 9 C 1.52994 * 109.46815 * 180.02562 * 8 7 6 10 10 N 1.46502 * 109.46812 * 180.02562 * 9 8 7 11 11 C 1.34783 * 119.99789 * 179.97438 * 10 9 8 12 12 O 1.21279 * 120.00066 * 0.02562 * 11 10 9 13 13 C 1.50705 * 119.99826 * 179.97438 * 11 10 9 14 14 S 1.80994 * 109.47127 * 180.02562 * 13 11 10 15 15 C 1.76198 * 100.00070 * 180.02562 * 14 13 11 16 16 H 1.08004 * 120.00119 * 0.02562 * 15 14 13 17 17 C 1.38803 * 119.99856 * 179.97438 * 15 14 13 18 18 N 1.31630 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99773 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47207 * 60.00145 * 19 17 15 21 21 H 1.48492 * 109.47048 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47052 * 300.00143 * 19 17 15 23 23 N 1.32258 * 120.40243 * 179.71737 * 2 1 3 24 24 H 1.08999 * 109.47015 * 90.00471 * 1 2 3 25 25 H 1.09000 * 109.46646 * 209.99623 * 1 2 3 26 26 H 1.09000 * 109.47248 * 330.00341 * 1 2 3 27 27 H 1.08002 * 120.72588 * 359.95309 * 3 2 1 28 28 H 1.07995 * 120.39993 * 179.97438 * 4 3 2 29 29 H 0.96993 * 119.99747 * 180.02562 * 7 6 5 30 30 H 1.08996 * 109.47564 * 300.00280 * 8 7 6 31 31 H 1.08997 * 109.46656 * 60.00084 * 8 7 6 32 32 H 1.09001 * 109.47219 * 299.99627 * 9 8 7 33 33 H 1.08997 * 109.47579 * 60.00478 * 9 8 7 34 34 H 0.97002 * 120.00105 * 359.97438 * 10 9 8 35 35 H 1.09001 * 109.47401 * 300.00871 * 13 11 10 36 36 H 1.08997 * 109.46681 * 60.00175 * 13 11 10 37 37 H 0.96992 * 120.00045 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2085 1.1957 0.0000 4 6 3.5937 1.1512 0.0005 5 7 4.2016 -0.0237 0.0016 6 6 3.5015 -1.1484 0.0015 7 7 4.1700 -2.3604 0.0032 8 6 5.6347 -2.3890 0.0043 9 6 6.1164 -3.8411 0.0054 10 7 7.5811 -3.8697 0.0071 11 6 8.2321 -5.0499 0.0088 12 8 7.6053 -6.0881 0.0084 13 6 9.7389 -5.0793 0.0100 14 16 10.3088 -6.7971 0.0114 15 6 12.0521 -6.5412 0.0134 16 1 12.4505 -5.5373 0.0139 17 6 12.9133 -7.6297 0.0155 18 7 12.4278 -8.8532 0.0154 19 14 14.7615 -7.3583 0.0169 20 1 15.1484 -6.5924 1.2289 21 1 15.4546 -8.6716 0.0197 22 1 15.1507 -6.5951 -1.1961 23 7 2.1764 -1.1407 0.0056 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3632 -0.8900 0.5138 26 1 -0.3634 0.8900 0.5138 27 1 1.6869 2.1414 -0.0008 28 1 4.1698 2.0647 0.0001 29 1 3.6687 -3.1907 0.0028 30 1 6.0087 -1.8831 -0.8858 31 1 6.0072 -1.8815 0.8941 32 1 5.7425 -4.3473 0.8953 33 1 5.7439 -4.3482 -0.8847 34 1 8.0824 -3.0392 0.0071 35 1 10.1129 -4.5734 -0.8801 36 1 10.1114 -4.5718 0.8998 37 1 13.0296 -9.6138 0.0164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001093525355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:01 Heat of formation + Delta-G solvation = 13.730911 kcal Electronic energy + Delta-G solvation = -19578.779777 eV Core-core repulsion = 16289.549798 eV Total energy + Delta-G solvation = -3289.229979 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.24802 -39.26528 -36.97935 -34.70168 -34.28633 -32.43273 -32.06474 -29.96913 -28.74665 -27.69489 -25.48449 -24.00632 -23.42299 -22.00682 -20.43832 -18.54564 -17.81664 -17.45371 -16.34300 -16.13779 -16.00076 -15.61423 -15.38708 -14.86103 -14.80335 -14.48985 -14.46373 -13.86069 -13.52202 -13.47015 -13.16649 -12.71936 -12.56925 -12.52799 -11.99301 -11.73965 -11.27049 -11.05129 -11.03921 -10.97118 -10.77546 -10.48486 -9.83572 -9.49701 -9.41602 -9.07396 -8.98656 -8.43050 -8.25310 -6.50988 -6.21871 -3.92820 0.84316 0.89884 2.34859 3.04389 3.08887 3.23578 3.27983 3.32838 3.57934 3.72224 3.81232 4.19222 4.20111 4.42673 4.47725 4.85345 4.85506 4.91049 5.06983 5.10812 5.12931 5.13224 5.20488 5.44656 5.50018 5.57533 5.66031 5.75686 5.87709 5.97317 6.12454 6.45371 6.52983 6.76733 7.13213 7.58802 7.62024 8.03505 8.34703 8.54439 9.23276 10.85505 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.053483 B = 0.001985 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.409626 B =14105.608816 C =14597.967682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.218 3.782 3 C -0.296 4.296 4 C 0.194 3.806 5 N -0.572 5.572 6 C 0.571 3.429 7 N -0.694 5.694 8 C 0.129 3.871 9 C 0.110 3.890 10 N -0.736 5.736 11 C 0.534 3.466 12 O -0.515 6.515 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.537 4.537 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 N -0.573 5.573 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.417 0.583 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.401 0.599 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.740 22.268 -0.066 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.070 3.930 3 C -0.322 4.322 4 C 0.027 3.973 5 N -0.295 5.295 6 C 0.214 3.786 7 N -0.331 5.331 8 C 0.004 3.996 9 C -0.015 4.015 10 N -0.391 5.391 11 C 0.320 3.680 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.167 5.833 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 N -0.296 5.296 24 H 0.103 0.897 25 H 0.100 0.900 26 H 0.100 0.900 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.255 0.745 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.042 19.414 -0.056 28.630 hybrid contribution 1.552 2.320 -0.014 2.791 sum -19.490 21.734 -0.070 29.194 Atomic orbital electron populations 1.20800 0.88002 1.04001 1.03664 1.21417 0.97015 0.87432 0.87140 1.22366 0.96408 1.00098 1.13315 1.22935 0.92029 0.95026 0.87313 1.67944 1.40822 0.98066 1.22697 1.19212 0.84942 0.86600 0.87882 1.43866 1.06001 1.04123 1.79156 1.21384 0.78628 0.96370 1.03233 1.21304 0.81760 0.95227 1.03246 1.45779 1.05821 1.09208 1.78332 1.20330 0.89833 0.82814 0.75012 1.90712 1.68699 1.32191 1.47316 1.23528 0.93127 1.08618 1.05097 1.85404 1.04450 0.96730 1.96739 1.22830 0.91029 0.95498 1.59128 0.90922 1.24995 0.99641 0.94427 0.94508 1.70004 1.35663 0.97884 1.46731 0.86217 0.82816 0.77623 0.78802 1.19938 1.20810 1.19931 1.67701 1.07557 1.31268 1.23118 0.89653 0.89997 0.90040 0.83999 0.81587 0.74548 0.90727 0.90717 0.90909 0.90904 0.76489 0.89057 0.89059 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.52 10.22 36.01 0.37 -0.16 16 2 C 0.22 1.82 6.82 -82.26 -0.56 1.26 16 3 C -0.30 -2.03 9.85 -39.31 -0.39 -2.42 16 4 C 0.19 1.51 11.30 -17.22 -0.19 1.32 16 5 N -0.57 -6.07 9.59 -13.93 -0.13 -6.20 16 6 C 0.57 6.39 8.43 -322.80 -2.72 3.67 16 7 N -0.69 -6.80 5.70 -62.31 -0.36 -7.16 16 8 C 0.13 1.18 5.76 -4.04 -0.02 1.15 16 9 C 0.11 1.21 5.79 -4.04 -0.02 1.18 16 10 N -0.74 -9.39 5.56 -60.29 -0.33 -9.73 16 11 C 0.53 9.77 7.85 -10.98 -0.09 9.69 16 12 O -0.52 -11.58 15.86 5.56 0.09 -11.49 16 13 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 14 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 15 C -0.54 -15.25 9.50 30.94 0.29 -14.95 16 16 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 19 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 N -0.57 -6.22 10.40 -10.15 -0.11 -6.33 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.23 8.09 -51.93 -0.42 -0.19 16 27 H 0.14 0.55 8.06 -52.49 -0.42 0.12 16 28 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 29 H 0.42 3.69 8.59 -40.82 -0.35 3.34 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.40 3.91 8.47 -40.82 -0.35 3.56 16 35 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 36 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 37 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 341.45 15.07 5.15 5.15 Total: -1.00 -36.45 341.45 -10.29 -46.74 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -4.89 Total: 2.00 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -3.21 Total: -0.08 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.20 Total: -54.84 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.45 -10.29 -46.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093525355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.472 kcal (2) G-P(sol) polarization free energy of solvation -36.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds