Wall clock time and date at job start Fri Apr 10 2020 17:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48509 * 109.47304 * 240.00099 * 3 2 1 5 5 H 1.48501 * 109.47440 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47535 * 120.00035 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00190 * 163.18505 * 7 2 1 9 9 N 1.36940 * 120.00075 * 343.18463 * 7 2 1 10 10 C 1.46925 * 120.62942 * 151.91248 * 9 7 2 11 11 C 1.53190 * 108.89198 * 126.46056 * 10 9 7 12 12 C 1.53042 * 109.31436 * 54.56572 * 11 10 9 13 13 H 1.09000 * 109.46310 * 58.63833 * 12 11 10 14 14 N 1.46493 * 109.46247 * 178.61152 * 12 11 10 15 15 C 1.34771 * 120.00244 * 274.99878 * 14 12 11 16 16 O 1.21284 * 119.99901 * 359.97438 * 15 14 12 17 17 C 1.50703 * 120.00091 * 180.02562 * 15 14 12 18 18 C 1.53009 * 109.46889 * 180.02562 * 17 15 14 19 19 F 1.39895 * 109.46924 * 59.99888 * 18 17 15 20 20 F 1.39904 * 109.46609 * 180.02562 * 18 17 15 21 21 F 1.39904 * 109.46709 * 299.99720 * 18 17 15 22 22 C 1.53036 * 109.53237 * 298.63370 * 12 11 10 23 23 H 1.09003 * 109.50133 * 301.37465 * 22 12 11 24 24 O 1.42904 * 109.49576 * 181.31646 * 22 12 11 25 25 C 1.46961 * 120.65216 * 331.72500 * 9 7 2 26 26 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.59109 * 6.60140 * 10 9 7 28 28 H 1.08999 * 109.58340 * 246.32068 * 10 9 7 29 29 H 1.09003 * 109.49666 * 174.51325 * 11 10 9 30 30 H 1.08996 * 109.50354 * 294.61097 * 11 10 9 31 31 H 0.97002 * 119.99574 * 94.99407 * 14 12 11 32 32 H 1.08999 * 109.47171 * 299.99796 * 17 15 14 33 33 H 1.08998 * 109.47288 * 59.99830 * 17 15 14 34 34 H 0.96703 * 113.99829 * 180.02562 * 24 22 12 35 35 H 1.09007 * 109.46209 * 113.75367 * 25 9 7 36 36 H 1.08995 * 109.59351 * 353.40085 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2221 -0.2711 9 7 1.3693 -2.3629 0.3420 10 6 1.8152 -3.6528 -0.2021 11 6 2.0653 -4.6209 0.9584 12 6 0.8078 -4.7060 1.8265 13 1 -0.0313 -5.0435 1.2182 14 7 1.0321 -5.6563 2.9186 15 6 0.8268 -6.9732 2.7189 16 8 0.4559 -7.3716 1.6350 17 6 1.0569 -7.9508 3.8425 18 6 0.7544 -9.3691 3.3546 19 9 1.5973 -9.6833 2.2832 20 9 0.9676 -10.2764 4.3980 21 9 -0.5787 -9.4441 2.9370 22 6 0.4931 -3.3259 2.4081 23 1 1.3415 -2.9771 2.9969 24 8 -0.6634 -3.4126 3.2431 25 6 0.2252 -2.3430 1.2641 26 1 -0.4849 0.8401 0.0004 27 1 2.7373 -3.5124 -0.7661 28 1 1.0445 -4.0589 -0.8573 29 1 2.3022 -5.6088 0.5634 30 1 2.8991 -4.2597 1.5603 31 1 1.3284 -5.3377 3.7856 32 1 2.0957 -7.8926 4.1677 33 1 0.4006 -7.7056 4.6775 34 1 -0.9215 -2.5722 3.6459 35 1 -0.6770 -2.6412 0.7298 36 1 0.0982 -1.3384 1.6675 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099712927.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:09 Heat of formation + Delta-G solvation = -221.958629 kcal Electronic energy + Delta-G solvation = -24855.900953 eV Core-core repulsion = 20539.548346 eV Total energy + Delta-G solvation = -4316.352606 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 296.113 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.16558 -47.71750 -47.56643 -39.94701 -38.00241 -35.33799 -34.49863 -32.60476 -31.70075 -29.43714 -28.89419 -25.46017 -24.06538 -22.50890 -21.85204 -20.53386 -19.62476 -18.76176 -18.62890 -17.72551 -17.09523 -16.65229 -16.49893 -15.80479 -15.43830 -14.85873 -14.57390 -14.38163 -14.04278 -14.01696 -13.82745 -13.76039 -13.73159 -13.59404 -13.41054 -12.95119 -12.61860 -12.26764 -12.12661 -12.00242 -11.74939 -11.26789 -10.86710 -10.85114 -10.49157 -10.27731 -10.15223 -10.04109 -9.64115 -9.44371 -8.91706 -8.58944 -6.82747 -5.91545 -3.35771 2.43363 2.49455 3.06707 3.30801 3.37247 3.37682 3.56450 3.90146 4.04843 4.36523 4.49417 4.69565 4.81746 4.85577 5.24506 5.31475 5.38186 5.50986 5.83426 5.92336 6.01264 6.11033 6.34847 6.38019 6.64233 6.69715 6.85199 7.05773 7.37470 7.48115 7.67905 8.01170 8.13943 8.31479 9.06616 9.69193 10.25421 11.17027 Molecular weight = 296.11amu Principal moments of inertia in cm(-1) A = 0.038944 B = 0.003406 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.799899 B = 8219.794986 C = 8486.361796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.004 3.996 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.259 4.259 8 H 0.068 0.932 9 N -0.589 5.589 10 C 0.145 3.855 11 C -0.140 4.140 12 C 0.162 3.838 13 H 0.091 0.909 14 N -0.707 5.707 15 C 0.515 3.485 16 O -0.524 6.524 17 C -0.197 4.197 18 C 0.473 3.527 19 F -0.173 7.173 20 F -0.186 7.186 21 F -0.173 7.173 22 C 0.072 3.928 23 H 0.053 0.947 24 O -0.574 6.574 25 C 0.148 3.852 26 H 0.256 0.744 27 H 0.061 0.939 28 H 0.024 0.976 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.399 0.601 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.377 0.623 35 H 0.030 0.970 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -13.131 11.392 17.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.207 1.207 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.388 4.388 8 H 0.086 0.914 9 N -0.313 5.313 10 C 0.018 3.982 11 C -0.180 4.180 12 C 0.058 3.942 13 H 0.109 0.891 14 N -0.357 5.357 15 C 0.298 3.702 16 O -0.400 6.400 17 C -0.238 4.238 18 C 0.418 3.582 19 F -0.154 7.154 20 F -0.167 7.167 21 F -0.154 7.154 22 C 0.011 3.989 23 H 0.071 0.929 24 O -0.378 6.378 25 C 0.021 3.979 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.233 0.767 32 H 0.154 0.846 33 H 0.155 0.845 34 H 0.224 0.776 35 H 0.048 0.952 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.316 -13.912 10.379 17.511 hybrid contribution 0.511 1.436 0.636 1.651 sum 2.826 -12.477 11.015 16.882 Atomic orbital electron populations 1.70014 1.05282 1.25876 1.53380 1.25089 0.95319 0.98568 1.00490 0.86338 0.78915 0.83092 0.78233 1.20731 1.21555 1.20972 1.19166 0.92672 0.84552 1.42425 0.91386 1.43995 1.35635 1.01947 1.49693 1.20937 0.98378 0.86266 0.92649 1.22426 0.96489 1.00393 0.98706 1.21078 0.98954 0.86702 0.87445 0.89137 1.45984 1.68018 1.05700 1.15976 1.19691 0.78513 0.83485 0.88500 1.90827 1.45501 1.78124 1.25548 1.22990 1.08563 0.90521 1.01710 1.19728 0.75090 0.87978 0.75415 1.93224 1.71017 1.94036 1.57164 1.93189 1.94729 1.70552 1.58278 1.93231 1.34864 1.96806 1.90495 1.22982 0.87060 0.95320 0.93511 0.92948 1.86405 1.48184 1.37004 1.66243 1.21423 0.89924 0.98024 0.88520 0.93380 0.92025 0.95760 0.91669 0.91921 0.76674 0.84613 0.84520 0.77609 0.95153 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.02 11.20 55.49 0.62 -24.40 16 2 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 3 Si 0.90 20.69 29.59 -169.99 -5.03 15.66 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.26 -6.76 9.58 -15.06 -0.14 -6.90 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.00 3.00 -172.29 -0.52 -14.52 16 10 C 0.14 2.96 6.51 -3.71 -0.02 2.93 16 11 C -0.14 -2.39 5.65 -26.61 -0.15 -2.54 16 12 C 0.16 2.73 2.12 -67.89 -0.14 2.59 16 13 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 14 N -0.71 -9.29 4.92 -53.77 -0.26 -9.56 16 15 C 0.51 6.96 7.56 -10.99 -0.08 6.88 16 16 O -0.52 -9.43 14.50 5.55 0.08 -9.35 16 17 C -0.20 -1.71 5.75 -27.88 -0.16 -1.87 16 18 C 0.47 5.35 2.89 37.16 0.11 5.45 16 19 F -0.17 -2.32 16.40 2.25 0.04 -2.28 16 20 F -0.19 -1.88 17.32 2.25 0.04 -1.84 16 21 F -0.17 -2.36 16.40 2.25 0.04 -2.33 16 22 C 0.07 1.26 3.15 -26.61 -0.08 1.18 16 23 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 24 O -0.57 -9.09 13.16 -35.23 -0.46 -9.56 16 25 C 0.15 3.30 4.93 -3.69 -0.02 3.28 16 26 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 27 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.40 4.05 8.60 -40.82 -0.35 3.70 16 32 H 0.14 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.38 4.74 9.08 45.56 0.41 5.15 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 LS Contribution 313.31 15.07 4.72 4.72 Total: -1.00 -31.82 313.31 -5.09 -36.91 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -3.57 Total: 5.51 kcal Atomic # 6 Polarization: 11.81 SS G_CDS: -0.79 Total: 11.03 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.16 Total: -48.47 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.38 Total: -18.91 kcal Atomic # 9 Polarization: -6.56 SS G_CDS: 0.11 Total: -6.45 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.82 -5.09 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099712927.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.048 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds