Wall clock time and date at job start Fri Apr 10 2020 17:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34777 * 125.64945 * 178.97782 * 5 4 2 7 7 O 1.21599 * 120.00204 * 179.97438 * 6 5 4 8 8 C 1.47450 * 120.00077 * 359.96975 * 6 5 4 9 9 C 1.37983 * 124.15671 * 179.72792 * 8 6 5 10 10 S 1.72108 * 104.03060 * 179.90270 * 9 8 6 11 11 N 1.56396 * 96.15502 * 0.32657 * 10 9 8 12 12 N 1.27423 * 109.88063 * 359.80037 * 11 10 9 13 13 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 14 14 C 1.54907 * 104.83142 * 24.13000 * 13 5 4 15 15 H 1.09000 * 111.00135 * 81.06852 * 14 13 5 16 16 C 1.52999 * 111.00048 * 204.91325 * 14 13 5 17 17 N 1.46503 * 109.47602 * 287.19823 * 16 14 13 18 18 C 1.36929 * 120.00014 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00382 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99679 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46905 * 60.00140 * 22 20 18 24 24 H 1.48505 * 109.47088 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47159 * 299.99956 * 22 20 18 26 26 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 27 27 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 28 28 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 29 29 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 30 30 H 1.08999 * 109.88547 * 99.86758 * 4 2 1 31 31 H 1.07993 * 127.97911 * 359.97075 * 9 8 6 32 32 H 1.09002 * 110.36463 * 142.97358 * 13 5 4 33 33 H 1.09001 * 110.36471 * 265.17904 * 13 5 4 34 34 H 1.08992 * 109.47475 * 47.19905 * 16 14 13 35 35 H 1.09006 * 109.47078 * 167.20030 * 16 14 13 36 36 H 0.97003 * 119.99387 * 359.97438 * 17 16 14 37 37 H 0.96996 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9924 -2.3810 -1.4937 7 8 4.9409 -2.9600 -1.0001 8 6 3.6604 -2.5887 -2.9153 9 6 4.3692 -3.4143 -3.7637 10 16 3.5456 -3.2727 -5.2683 11 7 2.4613 -2.2611 -4.7712 12 7 2.6456 -1.9997 -3.5378 13 6 3.4633 -1.2508 0.6854 14 6 2.0790 -0.7974 1.2124 15 1 1.4452 -1.6560 1.4347 16 6 2.2278 0.1039 2.4397 17 7 2.6329 -0.7040 3.5928 18 6 2.8281 -0.1093 4.8107 19 1 2.6838 0.9552 4.9212 20 6 3.2124 -0.8748 5.9031 21 7 3.3887 -2.1722 5.7683 22 14 3.4794 -0.0636 7.5645 23 1 2.2190 0.5853 8.0067 24 1 3.8816 -1.0912 8.5582 25 1 4.5492 0.9599 7.4494 26 1 -0.3633 -1.0272 0.0302 27 1 -0.3633 0.5398 0.8744 28 1 -0.3633 0.4874 -0.9047 29 1 1.3130 -1.4731 -1.5801 30 1 2.3716 -0.0991 -1.9990 31 1 5.2392 -4.0123 -3.5359 32 1 3.7961 -2.1446 1.2133 33 1 4.1946 -0.4504 0.7977 34 1 2.9853 0.8626 2.2436 35 1 1.2748 0.5884 2.6524 36 1 2.7621 -1.6602 3.4936 37 1 3.6576 -2.7070 6.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106491702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:29 Heat of formation + Delta-G solvation = 52.921257 kcal Electronic energy + Delta-G solvation = -21361.781080 eV Core-core repulsion = 18074.250522 eV Total energy + Delta-G solvation = -3287.530558 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.37253 -39.73784 -37.88968 -34.67515 -32.98299 -32.34024 -31.35611 -29.28561 -27.41728 -26.45255 -25.62538 -23.72762 -22.54323 -21.17426 -20.50786 -19.97509 -18.71843 -17.07823 -16.75219 -16.33270 -16.16930 -15.70677 -15.08574 -14.63889 -14.31690 -14.02710 -13.60276 -13.14439 -13.11251 -12.90067 -12.83666 -12.41940 -12.24926 -12.10427 -11.96183 -11.31107 -11.06873 -10.83324 -10.66633 -10.53476 -10.38829 -10.38038 -10.34599 -10.23464 -10.20363 -9.99789 -9.63677 -8.85306 -8.60566 -6.90695 -5.73680 -3.02964 -0.25930 0.59052 1.21145 1.22009 2.87486 3.01542 3.46263 3.50419 3.51676 3.56545 4.35375 4.46908 4.60132 4.64443 4.84499 4.93658 5.04931 5.40119 5.54202 5.56451 5.61123 5.68614 5.81105 5.93448 6.04325 6.08045 6.14919 6.22080 6.28829 6.40196 6.45478 6.72977 6.85298 7.17613 7.44058 7.71586 7.97623 8.44586 9.55771 10.12824 10.47276 11.48955 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029289 B = 0.003182 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.746303 B = 8796.320170 C = 9563.125574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.100 4.100 3 H 0.087 0.913 4 C 0.113 3.887 5 N -0.597 5.597 6 C 0.610 3.390 7 O -0.525 6.525 8 C -0.015 4.015 9 C -0.235 4.235 10 S 0.453 5.547 11 N -0.293 5.293 12 N -0.205 5.205 13 C 0.115 3.885 14 C -0.101 4.101 15 H 0.087 0.913 16 C 0.166 3.834 17 N -0.733 5.733 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.932 5.932 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.209 0.791 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.022 0.978 35 H 0.026 0.974 36 H 0.384 0.616 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 -0.955 -24.563 24.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.120 4.120 3 H 0.105 0.895 4 C -0.010 4.010 5 N -0.329 5.329 6 C 0.393 3.607 7 O -0.400 6.400 8 C -0.162 4.162 9 C -0.392 4.392 10 S 0.589 5.411 11 N -0.273 5.273 12 N -0.076 5.076 13 C -0.006 4.006 14 C -0.120 4.120 15 H 0.105 0.895 16 C 0.038 3.962 17 N -0.377 5.377 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.581 5.581 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.226 0.774 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.218 0.782 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.496 -0.731 -25.621 25.753 hybrid contribution 1.054 -0.137 2.222 2.463 sum -1.442 -0.868 -23.399 23.459 Atomic orbital electron populations 1.21726 0.93686 1.02208 1.01995 1.22273 0.96532 0.99528 0.93644 0.89495 1.22250 0.87260 0.94840 0.96639 1.48340 1.29621 1.42814 1.12093 1.16232 0.82512 0.79684 0.82242 1.90872 1.28527 1.48858 1.71790 1.22706 0.94899 0.99925 0.98631 1.28887 1.07380 1.04427 0.98551 1.81504 1.13736 1.32439 1.13414 1.78696 1.22707 1.17093 1.08806 1.71714 1.16319 1.19987 0.99573 1.22470 0.98028 1.02047 0.78044 1.22681 0.95059 0.99386 0.94875 0.89461 1.20582 0.97341 0.92708 0.85565 1.42364 1.82660 1.07515 1.05185 1.19164 1.38835 0.92685 0.86571 0.91217 1.24747 1.02445 0.95586 0.98117 1.69650 1.53683 1.04344 1.30393 0.86268 0.77915 0.78014 0.83976 1.21298 1.21712 1.21272 0.92484 0.91677 0.92577 0.90598 0.90917 0.77410 0.89481 0.90578 0.96034 0.95659 0.78225 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.13 37.16 0.34 -1.18 16 2 C -0.10 -1.25 3.01 -88.79 -0.27 -1.52 16 3 H 0.09 1.03 8.04 -51.93 -0.42 0.62 16 4 C 0.11 1.42 5.08 -3.07 -0.02 1.41 16 5 N -0.60 -8.96 3.33 -171.78 -0.57 -9.54 16 6 C 0.61 9.47 7.84 -12.51 -0.10 9.37 16 7 O -0.52 -9.64 17.05 5.28 0.09 -9.55 16 8 C -0.01 -0.18 6.76 -83.78 -0.57 -0.75 16 9 C -0.24 -2.09 11.21 30.64 0.34 -1.74 16 10 S 0.45 3.02 23.38 -107.50 -2.51 0.51 16 11 N -0.29 -3.08 12.49 60.35 0.75 -2.33 16 12 N -0.21 -2.50 8.86 32.74 0.29 -2.21 16 13 C 0.12 1.92 6.32 -2.53 -0.02 1.91 16 14 C -0.10 -1.60 2.49 -88.48 -0.22 -1.82 16 15 H 0.09 1.46 8.04 -51.93 -0.42 1.04 16 16 C 0.17 3.22 5.72 -4.04 -0.02 3.20 16 17 N -0.73 -18.40 5.55 -59.91 -0.33 -18.73 16 18 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 21 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.95 7.24 -51.92 -0.38 0.57 16 30 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 31 H 0.21 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.09 1.65 8.04 -51.93 -0.42 1.23 16 33 H 0.08 1.29 7.91 -51.93 -0.41 0.88 16 34 H 0.02 0.42 7.96 -51.93 -0.41 0.01 16 35 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.38 10.21 7.67 -40.82 -0.31 9.90 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 326.99 15.07 4.93 4.93 Total: -1.00 -33.30 326.99 -7.25 -40.55 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.82 Total: 5.07 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -0.77 Total: 1.50 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: 0.86 Total: -60.53 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.55 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Atomic # 16 Polarization: 3.02 SS G_CDS: -2.51 Total: 0.51 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.30 -7.25 -40.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106491702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.471 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds