Wall clock time and date at job start Fri Apr 10 2020 17:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 110.63884 * 2 1 4 4 C 1.54320 * 110.72194 * 236.85979 * 2 1 3 5 5 N 1.47020 * 107.27107 * 219.44468 * 4 2 1 6 6 C 1.34777 * 125.64945 * 178.97782 * 5 4 2 7 7 O 1.21599 * 120.00204 * 179.97438 * 6 5 4 8 8 C 1.47450 * 120.00077 * 359.96975 * 6 5 4 9 9 C 1.37983 * 124.15671 * 179.72792 * 8 6 5 10 10 S 1.72108 * 104.03060 * 179.90270 * 9 8 6 11 11 N 1.56396 * 96.15502 * 0.32657 * 10 9 8 12 12 N 1.27423 * 109.88063 * 359.80037 * 11 10 9 13 13 C 1.47425 * 108.70099 * 358.93766 * 5 4 2 14 14 C 1.54907 * 104.83142 * 24.13000 * 13 5 4 15 15 H 1.09000 * 111.00135 * 81.06852 * 14 13 5 16 16 C 1.52999 * 111.00048 * 204.91325 * 14 13 5 17 17 N 1.46503 * 109.47602 * 287.19823 * 16 14 13 18 18 C 1.36929 * 120.00014 * 180.02562 * 17 16 14 19 19 H 1.07995 * 120.00382 * 359.97438 * 18 17 16 20 20 C 1.38818 * 119.99679 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99862 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46905 * 60.00140 * 22 20 18 24 24 H 1.48505 * 109.47088 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47159 * 299.99956 * 22 20 18 26 26 H 1.09001 * 109.47002 * 181.68599 * 1 2 3 27 27 H 1.08993 * 109.46955 * 301.69036 * 1 2 3 28 28 H 1.09000 * 109.47050 * 61.68865 * 1 2 3 29 29 H 1.09009 * 109.88244 * 338.86071 * 4 2 1 30 30 H 1.08999 * 109.88547 * 99.86758 * 4 2 1 31 31 H 1.07993 * 127.97911 * 359.97075 * 9 8 6 32 32 H 1.09002 * 110.36463 * 142.97358 * 13 5 4 33 33 H 1.09001 * 110.36471 * 265.17904 * 13 5 4 34 34 H 1.08992 * 109.47475 * 47.19905 * 16 14 13 35 35 H 1.09006 * 109.47078 * 167.20030 * 16 14 13 36 36 H 0.97003 * 119.99387 * 359.97438 * 17 16 14 37 37 H 0.96996 * 120.00228 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 3.2446 -1.5494 -0.7416 6 6 3.9924 -2.3810 -1.4937 7 8 4.9409 -2.9600 -1.0001 8 6 3.6604 -2.5887 -2.9153 9 6 4.3692 -3.4143 -3.7637 10 16 3.5456 -3.2727 -5.2683 11 7 2.4613 -2.2611 -4.7712 12 7 2.6456 -1.9997 -3.5378 13 6 3.4633 -1.2508 0.6854 14 6 2.0790 -0.7974 1.2124 15 1 1.4452 -1.6560 1.4347 16 6 2.2278 0.1039 2.4397 17 7 2.6329 -0.7040 3.5928 18 6 2.8281 -0.1093 4.8107 19 1 2.6838 0.9552 4.9212 20 6 3.2124 -0.8748 5.9031 21 7 3.3887 -2.1722 5.7683 22 14 3.4794 -0.0636 7.5645 23 1 2.2190 0.5853 8.0067 24 1 3.8816 -1.0912 8.5582 25 1 4.5492 0.9599 7.4494 26 1 -0.3633 -1.0272 0.0302 27 1 -0.3633 0.5398 0.8744 28 1 -0.3633 0.4874 -0.9047 29 1 1.3130 -1.4731 -1.5801 30 1 2.3716 -0.0991 -1.9990 31 1 5.2392 -4.0123 -3.5359 32 1 3.7961 -2.1446 1.2133 33 1 4.1946 -0.4504 0.7977 34 1 2.9853 0.8626 2.2436 35 1 1.2748 0.5884 2.6524 36 1 2.7621 -1.6602 3.4936 37 1 3.6576 -2.7070 6.5316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106491702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:29 Heat of formation + Delta-G solvation = 29.260036 kcal Electronic energy + Delta-G solvation = -21362.807107 eV Core-core repulsion = 18074.250522 eV Total energy + Delta-G solvation = -3288.556585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.25648 -40.86221 -39.14332 -36.47869 -34.35876 -33.18965 -33.06105 -30.81404 -28.37368 -27.49530 -27.07323 -25.30942 -23.93292 -22.35566 -21.47452 -21.23247 -19.79965 -19.03202 -17.79494 -17.31926 -17.23977 -16.78185 -16.46521 -16.06354 -15.56665 -15.40764 -15.17053 -14.91867 -14.32432 -14.13604 -13.85056 -13.47529 -13.42154 -13.22854 -13.06856 -12.93417 -12.72568 -12.48515 -12.20036 -11.93089 -11.84704 -11.66328 -11.43729 -11.43003 -11.19183 -11.18081 -10.91434 -10.89182 -9.82830 -8.98814 -7.93258 -5.22529 -0.96219 -0.07981 0.28174 0.52529 1.47945 1.51373 1.57359 1.76617 1.91900 2.57044 2.66715 3.34569 3.41212 3.53020 3.62355 3.70889 3.81125 4.17028 4.24207 4.32401 4.40189 4.51224 4.53306 4.71148 4.81181 4.83676 4.87134 5.05572 5.09458 5.17969 5.23418 5.35425 5.49256 5.52591 6.24077 6.28168 6.41105 6.81810 7.34465 8.10200 8.32586 9.30202 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.029289 B = 0.003182 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.746303 B = 8796.320170 C = 9563.125574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.099 0.901 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.606 3.394 7 O -0.566 6.566 8 C -0.042 4.042 9 C -0.240 4.240 10 S 0.573 5.427 11 N -0.329 5.329 12 N -0.224 5.224 13 C 0.120 3.880 14 C -0.090 4.090 15 H 0.076 0.924 16 C 0.167 3.833 17 N -0.747 5.747 18 C -0.245 4.245 19 H 0.079 0.921 20 C -0.077 4.077 21 N -0.971 5.971 22 Si 0.975 3.025 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.278 1.278 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.026 0.974 35 H 0.035 0.965 36 H 0.372 0.628 37 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.563 0.000 -26.849 26.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.117 0.883 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.391 3.609 7 O -0.445 6.445 8 C -0.189 4.189 9 C -0.396 4.396 10 S 0.708 5.292 11 N -0.310 5.310 12 N -0.093 5.093 13 C -0.003 4.003 14 C -0.110 4.110 15 H 0.095 0.905 16 C 0.040 3.960 17 N -0.390 5.390 18 C -0.376 4.376 19 H 0.097 0.903 20 C -0.270 4.270 21 N -0.622 5.622 22 Si 0.803 3.197 23 H -0.202 1.202 24 H -0.224 1.224 25 H -0.204 1.204 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.242 0.758 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.053 0.947 36 H 0.204 0.796 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.235 0.283 -27.950 28.138 hybrid contribution 1.298 -0.485 2.711 3.044 sum -1.937 -0.201 -25.239 25.314 Atomic orbital electron populations 1.21714 0.92100 1.02339 1.03089 1.22275 0.97738 0.99441 0.91343 0.88251 1.22327 0.86373 0.94811 0.96718 1.48408 1.30297 1.43082 1.11237 1.16695 0.81797 0.78838 0.83587 1.90832 1.30242 1.50370 1.73061 1.22307 0.96844 1.02407 0.97384 1.29260 1.07502 1.03198 0.99673 1.81107 1.09940 1.28471 1.09672 1.78332 1.25064 1.19195 1.08391 1.71745 1.16553 1.20793 1.00257 1.22231 0.98356 1.00312 0.79362 1.22487 0.94626 0.98969 0.94913 0.90527 1.20723 0.97385 0.92772 0.85083 1.42605 1.82773 1.07448 1.06143 1.19620 1.37209 0.93175 0.87640 0.90314 1.25599 1.03281 0.96179 1.01895 1.69825 1.55522 1.05831 1.31019 0.85197 0.78175 0.76926 0.79373 1.20164 1.22380 1.20397 0.92802 0.91923 0.90193 0.90117 0.89689 0.75833 0.92770 0.91189 0.95590 0.94680 0.79628 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.13 71.98 0.66 -2.03 16 2 C -0.09 -2.09 3.01 -9.61 -0.03 -2.12 16 3 H 0.10 2.14 8.04 -2.39 -0.02 2.12 16 4 C 0.12 2.89 5.08 86.73 0.44 3.33 16 5 N -0.60 -18.35 3.33 -815.63 -2.71 -21.06 16 6 C 0.61 19.27 7.84 86.67 0.68 19.95 16 7 O -0.57 -21.76 17.05 -4.03 -0.07 -21.83 16 8 C -0.04 -1.01 6.76 41.36 0.28 -0.73 16 9 C -0.24 -3.81 11.21 67.76 0.76 -3.05 16 10 S 0.57 5.77 23.38 -56.49 -1.32 4.45 16 11 N -0.33 -6.16 12.49 37.02 0.46 -5.70 16 12 N -0.22 -5.14 8.86 -50.34 -0.45 -5.59 16 13 C 0.12 4.17 6.32 86.85 0.55 4.72 16 14 C -0.09 -2.90 2.49 -9.41 -0.02 -2.92 16 15 H 0.08 2.64 8.04 -2.39 -0.02 2.62 16 16 C 0.17 6.47 5.72 86.38 0.49 6.97 16 17 N -0.75 -38.31 5.55 -343.45 -1.91 -40.21 16 18 C -0.24 -13.78 9.99 84.04 0.84 -12.94 16 19 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 22 Si 0.97 46.76 29.55 68.60 2.03 48.79 16 23 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 26 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 27 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.91 7.24 -2.38 -0.02 1.89 16 30 H 0.08 1.89 7.68 -2.39 -0.02 1.87 16 31 H 0.22 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.05 2.22 8.04 -2.39 -0.02 2.20 16 33 H 0.07 2.48 7.91 -2.39 -0.02 2.46 16 34 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 35 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.37 20.62 7.67 -92.71 -0.71 19.91 16 37 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -73.95 326.99 1.82 -72.13 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.38 Total: 22.50 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: 5.11 Total: 7.13 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -4.32 Total: -133.17 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.07 Total: -21.83 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.03 Total: 48.79 kcal Atomic # 16 Polarization: 5.77 SS G_CDS: -1.32 Total: 4.45 kcal Total: -73.95 1.82 -72.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106491702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.392 kcal (2) G-P(sol) polarization free energy of solvation -73.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds