Wall clock time and date at job start Fri Apr 10 2020 17:41:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86807 * 119.99338 * 2 1 4 4 H 1.48504 * 109.46885 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47136 * 300.00401 * 3 2 1 6 6 H 1.48493 * 109.46902 * 60.00568 * 3 2 1 7 7 C 1.38791 * 120.00359 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00028 * 179.97438 * 7 2 1 9 9 S 1.76199 * 120.00023 * 359.97438 * 7 2 1 10 10 C 1.81003 * 99.99856 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47254 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00180 * 179.97438 * 11 10 9 14 14 C 1.46502 * 120.00247 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47345 * 179.97438 * 14 13 11 16 16 N 1.46905 * 109.47039 * 180.02562 * 15 14 13 17 17 C 1.46901 * 110.99870 * 180.02562 * 16 15 14 18 18 C 1.50697 * 109.46943 * 180.02562 * 17 16 15 19 19 N 1.31803 * 119.11913 * 269.72300 * 18 17 16 20 20 C 1.32333 * 120.81208 * 179.75979 * 19 18 17 21 21 C 1.38592 * 119.11047 * 0.50927 * 20 19 18 22 22 C 1.38593 * 118.39674 * 359.74948 * 21 20 19 23 23 N 1.31797 * 119.12612 * 89.99824 * 18 17 16 24 24 H 0.96995 * 120.00491 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.46873 * 60.00093 * 10 9 7 26 26 H 1.08998 * 109.47428 * 299.99755 * 10 9 7 27 27 H 0.97001 * 119.99992 * 0.02562 * 13 11 10 28 28 H 1.09001 * 109.46535 * 59.99860 * 14 13 11 29 29 H 1.08998 * 109.46918 * 300.00331 * 14 13 11 30 30 H 1.09001 * 109.47393 * 60.00416 * 15 14 13 31 31 H 1.08998 * 109.47408 * 300.00062 * 15 14 13 32 32 H 1.00901 * 110.99869 * 56.04956 * 16 15 14 33 33 H 1.09004 * 109.47031 * 299.99620 * 17 16 15 34 34 H 1.08995 * 109.47111 * 59.99900 * 17 16 15 35 35 H 1.08006 * 120.44382 * 180.23897 * 20 19 18 36 36 H 1.07997 * 120.80402 * 179.77456 * 21 20 19 37 37 H 1.08007 * 120.44813 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7103 1.3467 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0104 -1.2019 -0.0005 8 1 3.0904 -1.2019 -0.0010 9 16 1.1295 -2.7279 -0.0005 10 6 2.5162 -3.8912 -0.0021 11 6 1.9878 -5.3027 -0.0017 12 8 0.7915 -5.5023 -0.0009 13 7 2.8446 -6.3429 -0.0033 14 6 2.3311 -7.7150 -0.0034 15 6 3.5031 -8.6983 -0.0059 16 7 2.9881 -10.0741 -0.0067 17 6 4.0879 -11.0479 -0.0085 18 6 3.5221 -12.4447 -0.0099 19 7 3.2870 -13.0426 1.1409 20 6 2.7861 -14.2669 1.1788 21 6 2.5190 -14.9233 -0.0122 22 6 2.7843 -14.2639 -1.2021 23 7 3.2805 -13.0378 -1.1618 24 1 -0.4850 0.8400 0.0004 25 1 3.1254 -3.7315 0.8875 26 1 3.1241 -3.7308 -0.8925 27 1 3.8014 -6.1832 -0.0043 28 1 1.7214 -7.8745 -0.8928 29 1 1.7234 -7.8756 0.8871 30 1 4.1131 -8.5389 0.8832 31 1 4.1104 -8.5376 -0.8967 32 1 2.3676 -10.2275 -0.7875 33 1 4.6998 -10.9033 -0.8990 34 1 4.7013 -10.9049 0.8810 35 1 2.5923 -14.7498 2.1252 36 1 2.1134 -15.9242 -0.0132 37 1 2.5883 -14.7441 -2.1494 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123787850.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:44 Heat of formation + Delta-G solvation = -15.842380 kcal Electronic energy + Delta-G solvation = -19415.900436 eV Core-core repulsion = 16125.388064 eV Total energy + Delta-G solvation = -3290.512373 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.105 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.95427 -40.62127 -37.85252 -35.62819 -34.67792 -34.57762 -33.30642 -31.47348 -29.37957 -27.67624 -26.53617 -25.47934 -23.34099 -23.19836 -21.77805 -19.84813 -18.57387 -18.18158 -17.78156 -17.26065 -17.05419 -16.87383 -16.41110 -16.34136 -16.06167 -15.71126 -15.19577 -14.83692 -14.67042 -14.54750 -14.32804 -14.16160 -13.54708 -13.35581 -13.15294 -12.91047 -12.70983 -12.56839 -12.44002 -11.85104 -11.79408 -11.70017 -11.15280 -11.00939 -10.55613 -10.26279 -10.22200 -10.14560 -9.55894 -8.66313 -8.34095 -6.12333 -0.10887 0.16041 1.27211 1.42308 1.47479 1.58745 1.61107 2.15956 2.28122 2.70465 2.91900 3.00137 3.23607 3.30945 3.46775 3.77048 3.82764 4.01845 4.08280 4.13435 4.21564 4.32265 4.38830 4.42062 4.49635 4.52456 4.68397 4.89343 4.91148 4.93912 5.38323 5.43044 5.44986 5.78851 6.05919 6.17495 6.20892 6.50538 7.07276 7.11837 7.24604 8.75456 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.059961 B = 0.001853 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 466.860364 B =15105.593731 C =15272.546900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.710 5.710 14 C 0.126 3.874 15 C 0.065 3.935 16 N -0.688 5.688 17 C 0.133 3.867 18 C 0.301 3.699 19 N -0.531 5.531 20 C 0.132 3.868 21 C -0.216 4.216 22 C 0.134 3.866 23 N -0.540 5.540 24 H 0.271 0.729 25 H 0.112 0.888 26 H 0.112 0.888 27 H 0.419 0.581 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.060 0.940 32 H 0.345 0.655 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.195 0.805 36 H 0.185 0.815 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.694 -30.718 -1.017 33.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.064 4.064 16 N -0.321 5.321 17 C 0.003 3.997 18 C 0.032 3.968 19 N -0.246 5.246 20 C -0.033 4.033 21 C -0.237 4.237 22 C -0.031 4.031 23 N -0.255 5.255 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.131 0.869 27 H 0.256 0.744 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.163 0.837 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.212 0.788 36 H 0.202 0.798 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 10.885 -30.095 -0.328 32.005 hybrid contribution 1.568 0.451 -0.870 1.849 sum 12.453 -29.644 -1.198 32.175 Atomic orbital electron populations 1.70195 1.08012 1.28546 1.48117 1.26151 0.95977 1.03390 0.93758 0.84883 0.78626 0.76244 0.78039 1.17936 1.19963 1.19969 1.23248 0.95406 0.91916 1.58711 0.89759 1.85621 1.10744 0.99385 1.97059 1.23367 1.03498 0.94058 1.07027 1.20095 0.86183 0.86750 0.75077 1.90700 1.17585 1.86132 1.50163 1.45565 1.10464 1.04832 1.75604 1.21152 0.96969 0.79966 1.01794 1.21971 0.95183 0.86042 1.03179 1.60211 1.18760 1.02185 1.50951 1.20567 0.92196 0.83501 1.03410 1.23151 0.92736 0.97027 0.83866 1.68268 1.13752 1.11758 1.30801 1.23898 0.89361 0.89146 1.00858 1.23341 1.02081 1.04484 0.93837 1.23869 0.89314 0.89082 1.00841 1.68262 1.14330 1.12359 1.30534 0.92010 0.86980 0.86939 0.74397 0.92651 0.92448 0.88612 0.92171 0.83671 0.91318 0.87902 0.78804 0.79750 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.49 13.22 21.65 0.29 -56.20 16 2 C 0.01 0.68 5.49 84.85 0.47 1.14 16 3 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 4 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.55 -31.27 9.50 67.95 0.65 -30.62 16 8 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 9 S -0.16 -8.71 20.57 -56.49 -1.16 -9.88 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.93 7.85 87.66 0.69 20.62 16 12 O -0.57 -27.07 15.86 -3.04 -0.05 -27.12 16 13 N -0.71 -17.73 5.56 -463.07 -2.57 -20.30 16 14 C 0.13 2.89 5.93 86.38 0.51 3.41 16 15 C 0.07 1.00 5.80 86.30 0.50 1.50 16 16 N -0.69 -12.01 6.49 -517.93 -3.36 -15.37 16 17 C 0.13 2.10 6.12 85.56 0.52 2.62 16 18 C 0.30 5.58 7.15 138.75 0.99 6.57 16 19 N -0.53 -9.91 10.34 -187.84 -1.94 -11.85 16 20 C 0.13 1.53 11.30 84.70 0.96 2.49 16 21 C -0.22 -1.63 10.17 22.44 0.23 -1.40 16 22 C 0.13 1.44 11.30 84.70 0.96 2.39 16 23 N -0.54 -9.31 10.34 -187.84 -1.94 -11.26 16 24 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 25 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 26 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 27 H 0.42 7.11 8.47 -92.71 -0.79 6.32 16 28 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.35 6.25 8.72 -89.69 -0.78 5.46 16 33 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.20 0.96 8.06 -2.91 -0.02 0.94 16 36 H 0.19 -0.07 8.06 -2.91 -0.02 -0.09 16 37 H 0.20 0.74 8.06 -2.91 -0.02 0.71 16 Total: -1.00 -83.70 342.65 -2.27 -85.97 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.47 Total: 16.11 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: 6.91 Total: 4.08 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -9.53 Total: -114.98 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -83.70 -2.27 -85.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123787850.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.128 kcal (2) G-P(sol) polarization free energy of solvation -83.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds