Wall clock time and date at job start Fri Apr 10 2020 17:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86794 * 120.00621 * 2 1 4 4 H 1.48506 * 109.47148 * 240.00346 * 3 2 1 5 5 H 1.48505 * 109.46814 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47539 * 119.99811 * 3 2 1 7 7 C 1.38953 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00484 * 179.97438 * 7 2 1 9 9 N 1.37102 * 119.99755 * 359.97438 * 7 2 1 10 10 C 1.34779 * 119.99933 * 179.97438 * 9 7 2 11 11 O 1.21286 * 120.00040 * 0.02562 * 10 9 7 12 12 C 1.50703 * 119.99944 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.46835 * 180.02562 * 12 10 9 14 14 C 1.34780 * 119.99566 * 180.02562 * 13 12 10 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.50703 * 109.47064 * 179.97438 * 16 14 13 18 18 C 1.38172 * 120.01277 * 264.72240 * 17 16 14 19 19 C 1.38432 * 120.03031 * 179.79239 * 18 17 16 20 20 F 1.35101 * 119.97184 * 180.25426 * 19 18 17 21 21 C 1.38482 * 120.05577 * 0.46314 * 19 18 17 22 22 C 1.38118 * 120.03175 * 359.78943 * 21 19 18 23 23 C 1.38676 * 120.01470 * 84.99834 * 17 16 14 24 24 O 1.35944 * 120.03666 * 359.97438 * 23 17 16 25 25 H 0.97008 * 119.99447 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00359 * 0.02562 * 9 7 2 27 27 H 1.09001 * 109.46980 * 60.00059 * 12 10 9 28 28 H 1.09002 * 109.47152 * 300.00160 * 12 10 9 29 29 H 0.96995 * 120.00423 * 359.97438 * 13 12 10 30 30 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 31 31 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 32 32 H 1.07999 * 119.98718 * 0.02562 * 18 17 16 33 33 H 1.08005 * 119.97977 * 179.76995 * 21 19 18 34 34 H 1.08004 * 120.01647 * 179.97438 * 22 21 19 35 35 H 0.96704 * 114.00161 * 89.99312 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1020 1.6962 -1.2126 5 1 1.2833 2.7464 -0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3232 -2.3907 -0.0005 10 6 1.9971 -3.5579 -0.0016 11 8 3.2099 -3.5580 -0.0021 12 6 1.2435 -4.8630 -0.0022 13 7 2.1954 -5.9765 -0.0027 14 6 1.7460 -7.2472 -0.0038 15 8 0.5536 -7.4688 -0.0039 16 6 2.7253 -8.3927 -0.0037 17 6 1.9716 -9.6978 -0.0044 18 6 1.7208 -10.3517 1.1867 19 6 1.0249 -11.5483 1.1869 20 9 0.7758 -12.1841 2.3526 21 6 0.5875 -12.0965 -0.0073 22 6 0.8414 -11.4476 -1.1998 23 6 1.5346 -10.2458 -1.2010 24 8 1.7851 -9.6061 -2.3740 25 1 -0.4850 0.8402 0.0004 26 1 0.3532 -2.3907 -0.0005 27 1 0.6165 -4.9201 -0.8920 28 1 0.6171 -4.9213 0.8880 29 1 3.1490 -5.7994 -0.0030 30 1 3.3526 -8.3345 -0.8932 31 1 3.3513 -8.3356 0.8868 32 1 2.0646 -9.9271 2.1183 33 1 0.0479 -13.0321 -0.0060 34 1 0.5005 -11.8755 -2.1310 35 1 2.6199 -9.8607 -2.7905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157078664.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:46 Heat of formation + Delta-G solvation = -167.139984 kcal Electronic energy + Delta-G solvation = -22450.533840 eV Core-core repulsion = 18554.954784 eV Total energy + Delta-G solvation = -3895.579056 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 296.100 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.89647 -41.37649 -40.50197 -39.65024 -37.44457 -36.24686 -35.25795 -33.93778 -33.36950 -30.77562 -29.81024 -28.08735 -26.26686 -23.84890 -23.12195 -21.40303 -21.34942 -20.07500 -19.39002 -18.66569 -18.16497 -17.87499 -17.24126 -16.96621 -16.72253 -16.65543 -16.32791 -16.24067 -15.67713 -15.59734 -15.07546 -14.77132 -14.72514 -14.22994 -13.91377 -13.89463 -13.61697 -13.53541 -12.93071 -12.83960 -12.74829 -12.64046 -12.47308 -12.13772 -11.56193 -11.46016 -11.07500 -10.56546 -10.18960 -10.08337 -10.02095 -9.43494 -8.51242 -6.01765 0.03428 0.13914 1.38079 1.42778 1.53857 1.64001 1.91030 2.02578 2.30397 2.54515 3.13454 3.15925 3.21168 3.22712 3.55470 3.76109 3.94619 4.09322 4.23927 4.26967 4.40086 4.44009 4.46691 4.54133 4.85230 4.92042 5.09295 5.12593 5.29531 5.36037 5.38114 5.77746 5.91295 6.45815 6.56272 6.87290 7.02790 7.21516 7.44107 7.93474 8.65521 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.035733 B = 0.002540 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.407539 B =11021.933611 C =11214.506733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.273 1.273 6 H -0.269 1.269 7 C -0.338 4.338 8 H 0.088 0.912 9 N -0.561 5.561 10 C 0.434 3.566 11 O -0.622 6.622 12 C 0.121 3.879 13 N -0.707 5.707 14 C 0.516 3.484 15 O -0.579 6.579 16 C -0.089 4.089 17 C -0.078 4.078 18 C -0.134 4.134 19 C 0.068 3.932 20 F -0.147 7.147 21 C -0.135 4.135 22 C -0.121 4.121 23 C 0.109 3.891 24 O -0.503 6.503 25 H 0.280 0.720 26 H 0.398 0.602 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.416 0.584 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.147 0.853 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.273 -22.600 -1.835 23.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.467 4.467 8 H 0.106 0.894 9 N -0.196 5.196 10 C 0.221 3.779 11 O -0.510 6.510 12 C -0.007 4.007 13 N -0.362 5.362 14 C 0.304 3.696 15 O -0.458 6.458 16 C -0.128 4.128 17 C -0.079 4.079 18 C -0.153 4.153 19 C 0.049 3.951 20 F -0.126 7.126 21 C -0.153 4.153 22 C -0.139 4.139 23 C 0.064 3.936 24 O -0.316 6.316 25 H 0.089 0.911 26 H 0.232 0.768 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.254 0.746 30 H 0.152 0.848 31 H 0.151 0.849 32 H 0.165 0.835 33 H 0.178 0.822 34 H 0.178 0.822 35 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 3.542 -22.317 -1.691 22.659 hybrid contribution 0.344 0.810 0.201 0.903 sum 3.885 -21.507 -1.490 21.905 Atomic orbital electron populations 1.69683 1.07082 1.29714 1.49272 1.26153 0.96530 1.02768 0.95753 0.84918 0.77707 0.76145 0.79167 1.19391 1.19714 1.19402 1.19721 0.93010 0.83520 1.50470 0.89420 1.41867 1.09582 1.04699 1.63457 1.20403 0.88135 0.85854 0.83515 1.90463 1.15023 1.87532 1.57996 1.20727 0.91874 0.84214 1.03841 1.45697 1.11311 1.04419 1.74775 1.21049 0.89798 0.83803 0.74958 1.90701 1.18731 1.85194 1.51193 1.20564 0.96689 0.87335 1.08260 1.19586 0.99727 0.95958 0.92638 1.21076 1.00309 0.94525 0.99342 1.17828 1.01927 0.93425 0.81884 1.91480 1.92705 1.81490 1.46904 1.21280 1.01527 1.02233 0.90296 1.21495 0.99092 0.93881 0.99414 1.18458 0.98077 0.91578 0.85534 1.84886 1.46032 1.66518 1.34198 0.91068 0.76797 0.89300 0.89180 0.74586 0.84839 0.84923 0.83534 0.82195 0.82152 0.72927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.94 13.05 21.66 0.28 -48.66 16 2 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 3 Si 1.00 41.55 29.55 68.60 2.03 43.58 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.34 -18.55 9.68 84.04 0.81 -17.74 16 8 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 9 N -0.56 -28.18 5.29 -306.98 -1.62 -29.81 16 10 C 0.43 19.86 7.85 87.66 0.69 20.55 16 11 O -0.62 -31.49 15.24 -3.05 -0.05 -31.54 16 12 C 0.12 4.44 6.15 85.63 0.53 4.97 16 13 N -0.71 -22.11 5.53 -466.78 -2.58 -24.69 16 14 C 0.52 15.15 7.82 87.66 0.69 15.83 16 15 O -0.58 -21.74 16.03 -3.03 -0.05 -21.79 16 16 C -0.09 -1.68 5.55 29.10 0.16 -1.52 16 17 C -0.08 -1.61 4.39 -19.77 -0.09 -1.70 16 18 C -0.13 -2.76 9.65 22.30 0.22 -2.55 16 19 C 0.07 1.42 7.30 22.37 0.16 1.58 16 20 F -0.15 -3.25 17.27 44.97 0.78 -2.47 16 21 C -0.13 -2.28 10.02 22.30 0.22 -2.06 16 22 C -0.12 -2.00 9.98 22.36 0.22 -1.78 16 23 C 0.11 2.14 6.68 22.49 0.15 2.29 16 24 O -0.50 -9.05 12.64 -92.92 -1.17 -10.22 16 25 H 0.28 14.00 8.31 -92.70 -0.77 13.23 16 26 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 27 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.42 12.31 7.44 -92.71 -0.69 11.62 16 30 H 0.13 1.80 7.69 -2.39 -0.02 1.78 16 31 H 0.13 1.78 8.05 -2.39 -0.02 1.76 16 32 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.16 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.41 2.70 9.06 -74.05 -0.67 2.03 16 Total: -1.00 -72.78 322.56 0.94 -71.84 By element: Atomic # 1 Polarization: 36.93 SS G_CDS: -0.91 Total: 36.02 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 4.23 Total: 17.74 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -3.92 Total: -103.16 kcal Atomic # 8 Polarization: -62.28 SS G_CDS: -1.27 Total: -63.55 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 0.78 Total: -2.47 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -72.78 0.94 -71.84 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157078664.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.300 kcal (2) G-P(sol) polarization free energy of solvation -72.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds