Wall clock time and date at job start Fri Apr 10 2020 17:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42097 * 108.57523 * 2 1 4 4 O 1.42098 * 108.57800 * 228.97570 * 2 1 3 5 5 C 1.81396 * 101.92108 * 114.48695 * 2 1 3 6 6 H 1.08994 * 112.85395 * 53.80428 * 5 2 1 7 7 C 1.53783 * 113.61362 * 185.00440 * 5 2 1 8 8 C 1.53775 * 87.08267 * 139.97889 * 7 5 2 9 9 H 1.09007 * 113.61270 * 89.19912 * 8 7 5 10 10 N 1.46497 * 113.61435 * 220.01388 * 8 7 5 11 11 C 1.32213 * 120.00299 * 245.36611 * 10 8 7 12 12 C 1.46914 * 120.83485 * 7.37703 * 11 10 8 13 13 C 1.34374 * 119.36963 * 180.25707 * 12 11 10 14 14 N 1.36418 * 121.22183 * 359.43696 * 13 12 11 15 15 H 0.97001 * 119.09687 * 180.29649 * 14 13 12 16 16 C 1.37778 * 121.81743 * 0.57669 * 14 13 12 17 17 C 1.40180 * 119.74073 * 179.69587 * 16 14 13 18 18 H 1.07999 * 119.99691 * 158.90525 * 17 16 14 19 19 C 1.40350 * 120.00246 * 338.90578 * 17 16 14 20 20 N 1.30585 * 119.99770 * 334.01458 * 19 17 16 21 21 Si 1.86804 * 119.99956 * 154.01377 * 19 17 16 22 22 H 1.48495 * 109.47062 * 85.00179 * 21 19 17 23 23 H 1.48499 * 109.46947 * 205.00089 * 21 19 17 24 24 H 1.48498 * 109.47141 * 324.99851 * 21 19 17 25 25 C 1.39063 * 120.51517 * 359.71825 * 16 14 13 26 26 C 1.53772 * 87.17482 * 334.60747 * 8 7 5 27 27 H 1.09001 * 109.47199 * 305.51112 * 1 2 3 28 28 H 1.08997 * 109.47317 * 65.51664 * 1 2 3 29 29 H 1.09002 * 109.46618 * 185.51540 * 1 2 3 30 30 H 1.08998 * 113.61563 * 25.42602 * 7 5 2 31 31 H 1.09005 * 113.68962 * 254.53880 * 7 5 2 32 32 H 1.07999 * 120.30932 * 359.97438 * 12 11 10 33 33 H 1.07997 * 119.38800 * 179.72749 * 13 12 11 34 34 H 0.97003 * 119.99302 * 180.02562 * 20 19 17 35 35 H 1.08000 * 120.62853 * 179.97438 * 25 16 14 36 36 H 1.09004 * 113.61658 * 139.93440 * 26 8 7 37 37 H 1.08998 * 113.61445 * 270.84262 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6152 6 1 1.6958 -1.6957 1.7677 7 6 3.6894 -0.7534 1.9508 8 6 3.2921 -0.3792 3.3884 9 1 3.1020 -1.2416 4.0274 10 7 4.1867 0.6016 4.0080 11 6 4.9225 0.2588 5.0516 12 6 4.9808 -1.1372 5.5059 13 6 5.7341 -1.4520 6.5732 14 7 6.4544 -0.5014 7.2354 15 1 6.9913 -0.7637 7.9996 16 6 6.4360 0.8219 6.8523 17 6 7.1882 1.7636 7.5682 18 1 7.4596 2.7015 7.1066 19 6 7.5885 1.4876 8.8848 20 7 6.8943 0.6599 9.6184 21 14 9.1144 2.3045 9.5877 22 1 8.7563 3.6405 10.1278 23 1 9.6690 1.4623 10.6778 24 1 10.1308 2.4598 8.5163 25 6 5.6768 1.2307 5.7613 26 6 2.0164 0.2400 2.7936 27 1 -0.3633 0.5969 0.8365 28 1 -0.3634 0.4259 -0.9352 29 1 -0.3633 -1.0230 0.0988 30 1 4.2603 0.0217 1.4397 31 1 4.1453 -1.7399 1.8665 32 1 4.4199 -1.9022 4.9897 33 1 5.7736 -2.4773 6.9101 34 1 7.1709 0.4695 10.5285 35 1 5.6608 2.2676 5.4596 36 1 1.1223 0.0538 3.3886 37 1 2.1291 1.2873 2.5134 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168255562.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:51 Heat of formation + Delta-G solvation = -11.006775 kcal Electronic energy + Delta-G solvation = -20935.778026 eV Core-core repulsion = 17613.182590 eV Total energy + Delta-G solvation = -3322.595436 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 296.098 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -38.78703 -38.14526 -36.83050 -35.90372 -34.41078 -33.07211 -30.69073 -29.69864 -28.50775 -26.41398 -25.41488 -24.48110 -21.66336 -20.89596 -19.07074 -18.67014 -18.13091 -16.89739 -16.67085 -16.06881 -15.82656 -15.41651 -15.25034 -14.76790 -14.19282 -13.61065 -13.41816 -13.27167 -13.07168 -12.88147 -12.46975 -12.21747 -12.16810 -12.00922 -11.88666 -11.74976 -11.56707 -11.45099 -11.09365 -10.97744 -10.84943 -10.60358 -10.58670 -10.28256 -9.76742 -9.59399 -9.29034 -8.33401 -7.59712 -7.39818 -6.04726 -4.80837 0.08648 2.54322 2.65277 2.81178 2.84118 2.87851 3.11177 3.59762 3.66046 3.98909 4.17912 4.44457 4.49326 4.67185 4.71932 4.98178 5.05574 5.14396 5.49956 5.51611 5.67326 5.69506 5.95509 6.06744 6.12057 6.25153 6.29468 6.58917 6.63341 6.69687 6.73118 6.82524 7.34244 7.61492 7.70851 7.93545 8.19197 8.20565 8.72531 8.84470 9.58887 9.70801 Molecular weight = 296.10amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.002829 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.202531 B = 9896.481011 C =10173.083646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.420 3.580 3 O -0.933 6.933 4 O -0.951 6.951 5 C -0.597 4.597 6 H 0.142 0.858 7 C -0.106 4.106 8 C 0.086 3.914 9 H 0.058 0.942 10 N -0.662 5.662 11 C 0.286 3.714 12 C -0.300 4.300 13 C 0.127 3.873 14 N -0.605 5.605 15 H 0.409 0.591 16 C 0.330 3.670 17 C -0.468 4.468 18 H 0.106 0.894 19 C 0.080 3.920 20 N -0.796 5.796 21 Si 0.916 3.084 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.255 1.255 25 C -0.359 4.359 26 C -0.099 4.099 27 H 0.128 0.872 28 H 0.123 0.877 29 H 0.124 0.876 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.131 0.869 34 H 0.293 0.707 35 H 0.114 0.886 36 H 0.070 0.930 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.492 -5.794 -4.771 9.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.806 4.806 2 S 2.603 3.397 3 O -0.931 6.931 4 O -0.948 6.948 5 C -0.709 4.709 6 H 0.160 0.840 7 C -0.145 4.145 8 C -0.028 4.028 9 H 0.076 0.924 10 N -0.389 5.389 11 C 0.126 3.874 12 C -0.330 4.330 13 C -0.003 4.003 14 N -0.215 5.215 15 H 0.247 0.753 16 C 0.222 3.778 17 C -0.500 4.500 18 H 0.124 0.876 19 C -0.141 4.141 20 N -0.421 5.421 21 Si 0.739 3.261 22 H -0.187 1.187 23 H -0.199 1.199 24 H -0.178 1.178 25 C -0.388 4.388 26 C -0.138 4.138 27 H 0.147 0.853 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.090 0.910 32 H 0.133 0.867 33 H 0.148 0.852 34 H 0.104 0.896 35 H 0.132 0.868 36 H 0.089 0.911 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.249 -4.911 -5.896 9.896 hybrid contribution -0.060 -1.279 1.608 2.056 sum -6.308 -6.190 -4.288 9.824 Atomic orbital electron populations 1.30261 1.27914 1.11122 1.11327 1.07866 0.78001 0.76046 0.77747 1.93606 1.78690 1.34243 1.86518 1.93552 1.79083 1.67243 1.54972 1.31552 1.08958 1.11501 1.18848 0.84023 1.22941 0.88887 1.02290 1.00417 1.22394 0.93512 0.94364 0.92577 0.92431 1.73551 1.19476 1.29515 1.16396 1.20273 0.89978 0.88890 0.88286 1.22327 1.09370 0.98679 1.02654 1.21225 0.93010 0.92850 0.93192 1.41899 1.42650 1.06199 1.30720 0.75290 1.17582 0.88349 0.81148 0.90745 1.19479 1.29748 1.03992 0.96811 0.87649 1.26230 0.97108 0.94071 0.96660 1.69573 1.33749 1.29384 1.09433 0.86161 0.80862 0.80071 0.79012 1.18694 1.19873 1.17829 1.20214 1.14607 0.97987 1.05993 1.22856 0.99975 0.98121 0.92846 0.85294 0.85824 0.85750 0.88859 0.91033 0.86748 0.85176 0.89612 0.86761 0.91106 0.87710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 -5.14 10.62 101.05 1.07 -4.06 16 2 S 2.42 30.05 5.30 -107.50 -0.57 29.48 16 3 O -0.93 -15.47 17.35 -57.83 -1.00 -16.47 16 4 O -0.95 -14.70 18.10 -57.83 -1.05 -15.75 16 5 C -0.60 -7.61 4.16 -25.82 -0.11 -7.72 16 6 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 7 C -0.11 -1.76 7.47 -25.92 -0.19 -1.95 16 8 C 0.09 1.62 4.04 -67.13 -0.27 1.35 16 9 H 0.06 1.05 6.01 -51.93 -0.31 0.74 16 10 N -0.66 -15.56 10.61 -50.01 -0.53 -16.09 16 11 C 0.29 6.85 6.79 -82.74 -0.56 6.28 16 12 C -0.30 -6.17 9.31 -37.44 -0.35 -6.51 16 13 C 0.13 2.39 11.15 -16.88 -0.19 2.20 16 14 N -0.61 -12.70 4.92 -10.83 -0.05 -12.76 16 15 H 0.41 8.12 6.57 -40.82 -0.27 7.85 16 16 C 0.33 7.84 6.36 -84.16 -0.54 7.31 16 17 C -0.47 -10.82 8.97 -38.06 -0.34 -11.16 16 18 H 0.11 2.39 7.97 -52.49 -0.42 1.97 16 19 C 0.08 1.68 4.98 -17.29 -0.09 1.60 16 20 N -0.80 -16.84 11.56 55.57 0.64 -16.20 16 21 Si 0.92 15.79 29.63 -169.99 -5.04 10.75 16 22 H -0.26 -4.58 7.11 56.52 0.40 -4.18 16 23 H -0.27 -4.57 7.11 56.52 0.40 -4.17 16 24 H -0.25 -4.45 7.11 56.52 0.40 -4.04 16 25 C -0.36 -8.99 9.83 -37.82 -0.37 -9.36 16 26 C -0.10 -1.52 7.44 -25.83 -0.19 -1.71 16 27 H 0.13 0.85 8.14 -51.92 -0.42 0.43 16 28 H 0.12 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.12 0.70 8.14 -51.92 -0.42 0.28 16 30 H 0.09 1.70 8.10 -51.93 -0.42 1.28 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.11 2.10 6.25 -52.49 -0.33 1.77 16 33 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 34 H 0.29 5.55 8.29 -40.82 -0.34 5.21 16 35 H 0.11 2.94 8.06 -52.49 -0.42 2.52 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.10 1.75 7.49 -51.93 -0.39 1.36 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -31.46 325.56 -9.47 -40.93 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -4.65 Total: 14.95 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -2.12 Total: -23.75 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.06 Total: -45.04 kcal Atomic # 8 Polarization: -30.17 SS G_CDS: -2.05 Total: -32.22 kcal Atomic # 14 Polarization: 15.79 SS G_CDS: -5.04 Total: 10.75 kcal Atomic # 16 Polarization: 30.05 SS G_CDS: -0.57 Total: 29.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -31.46 -9.47 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168255562.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.924 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds