Wall clock time and date at job start Fri Apr 10 2020 17:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33000 * 1 3 3 C 1.47099 * 120.00055 * 2 1 4 4 O 1.21615 * 120.00077 * 359.97438 * 3 2 1 5 5 N 1.34770 * 119.99648 * 180.02562 * 3 2 1 6 6 C 1.46503 * 119.99737 * 179.97438 * 5 3 2 7 7 C 1.53007 * 109.47393 * 179.97438 * 6 5 3 8 8 N 1.46490 * 109.47243 * 180.02562 * 7 6 5 9 9 C 1.38541 * 119.99943 * 180.02562 * 8 7 6 10 10 C 1.40045 * 120.45137 * 0.02562 * 9 8 7 11 11 C 1.38793 * 118.59830 * 179.97438 * 10 9 8 12 12 Cl 1.73596 * 120.33989 * 179.97438 * 11 10 9 13 13 N 1.32215 * 119.32210 * 0.02562 * 11 10 9 14 14 C 1.33413 * 120.86102 * 0.02562 * 13 11 10 15 15 C 1.41579 * 119.23859 * 180.27501 * 14 13 11 16 16 H 1.07993 * 120.00328 * 179.72220 * 15 14 13 17 17 C 1.40053 * 119.99634 * 359.72889 * 15 14 13 18 18 N 1.30699 * 120.00179 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00077 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47238 * 89.99185 * 19 17 15 21 21 H 1.48495 * 109.47378 * 209.99677 * 19 17 15 22 22 H 1.48504 * 109.46878 * 329.99462 * 19 17 15 23 23 N 1.32565 * 120.45059 * 180.02562 * 9 8 7 24 24 H 1.08003 * 119.99636 * 0.02562 * 1 2 3 25 25 H 1.07995 * 120.00339 * 180.02562 * 1 2 3 26 26 H 1.08003 * 119.99636 * 179.97438 * 2 1 3 27 27 H 0.97001 * 120.00436 * 359.97438 * 5 3 2 28 28 H 1.09000 * 109.47106 * 59.99986 * 6 5 3 29 29 H 1.08993 * 109.47401 * 299.99793 * 6 5 3 30 30 H 1.09000 * 109.46734 * 60.00091 * 7 6 5 31 31 H 1.08998 * 109.46947 * 300.00875 * 7 6 5 32 32 H 0.96996 * 120.00484 * 0.02562 * 8 7 6 33 33 H 1.07999 * 120.69746 * 359.96316 * 10 9 8 34 34 H 0.96997 * 119.99827 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3300 0.0000 0.0000 3 6 2.0655 1.2739 0.0000 4 8 1.4575 2.3271 -0.0005 5 7 3.4132 1.2738 -0.0005 6 6 4.1458 2.5425 -0.0011 7 6 5.6501 2.2630 -0.0010 8 7 6.3825 3.5316 -0.0009 9 6 7.7679 3.5316 -0.0013 10 6 8.4777 2.3243 -0.0024 11 6 9.8649 2.3692 -0.0033 12 17 10.7897 0.9001 -0.0039 13 7 10.4748 3.5423 -0.0027 14 6 9.7743 4.6778 -0.0007 15 6 10.4627 5.9149 -0.0060 16 1 9.9080 6.8415 -0.0090 17 6 11.8630 5.9370 -0.0076 18 7 12.5343 4.8157 -0.0036 19 14 12.7714 7.5693 -0.0139 20 1 13.0134 8.0065 1.3844 21 1 14.0708 7.4100 -0.7147 22 1 11.9518 8.5891 -0.7166 23 7 8.4398 4.6744 -0.0008 24 1 -0.5400 0.9354 -0.0004 25 1 -0.5400 -0.9352 0.0004 26 1 1.8700 -0.9354 0.0004 27 1 3.8982 0.4338 -0.0005 28 1 3.8828 3.1143 0.8889 29 1 3.8822 3.1139 -0.8910 30 1 5.9133 1.6910 -0.8907 31 1 5.9133 1.6917 0.8892 32 1 5.8976 4.3717 -0.0006 33 1 7.9565 1.3784 -0.0022 34 1 13.5042 4.8310 -0.0043 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169802519.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:55 Heat of formation + Delta-G solvation = 3.196934 kcal Electronic energy + Delta-G solvation = -19976.764356 eV Core-core repulsion = 16549.200789 eV Total energy + Delta-G solvation = -3427.563567 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 296.078 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.98110 -40.68829 -37.90072 -37.34531 -35.93630 -35.10490 -33.85629 -33.15474 -31.71588 -29.28737 -28.33871 -25.14453 -24.07262 -23.31506 -22.82265 -20.78508 -19.82975 -18.59356 -18.10042 -17.93238 -16.91072 -16.84611 -16.45666 -15.82086 -15.67727 -15.45077 -15.35546 -15.03632 -14.95893 -14.54945 -14.22479 -13.45332 -13.19180 -13.07582 -12.80214 -12.77981 -12.75787 -12.67263 -12.01842 -11.93678 -11.63777 -11.11174 -10.93736 -10.90152 -10.76502 -10.17470 -10.10882 -9.42911 -8.86574 -8.43865 -6.79547 0.48170 0.63964 1.12890 1.13713 1.42921 1.53840 1.58962 1.85800 2.21879 2.33025 2.71838 2.74867 3.62718 3.85595 3.92794 4.04035 4.21856 4.30844 4.37836 4.49521 4.63226 4.78221 4.83839 4.84753 4.96311 5.11306 5.25847 5.34692 5.36175 5.50772 5.98457 6.16206 6.46473 6.52157 6.65833 6.72124 7.19104 7.21382 8.19424 8.36471 Molecular weight = 296.08amu Principal moments of inertia in cm(-1) A = 0.023233 B = 0.002926 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.878607 B = 9565.548140 C =10749.976146 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.224 4.224 3 C 0.534 3.466 4 O -0.596 6.596 5 N -0.709 5.709 6 C 0.120 3.880 7 C 0.131 3.869 8 N -0.716 5.716 9 C 0.450 3.550 10 C -0.397 4.397 11 C 0.246 3.754 12 Cl -0.056 7.056 13 N -0.563 5.563 14 C 0.408 3.592 15 C -0.427 4.427 16 H 0.094 0.906 17 C 0.024 3.976 18 N -0.738 5.738 19 Si 1.000 3.000 20 H -0.260 1.260 21 H -0.264 1.264 22 H -0.256 1.256 23 N -0.666 5.666 24 H 0.093 0.907 25 H 0.151 0.849 26 H 0.163 0.837 27 H 0.421 0.579 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.404 0.596 33 H 0.145 0.855 34 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.955 -10.988 -0.006 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.244 4.244 3 C 0.324 3.676 4 O -0.479 6.479 5 N -0.361 5.361 6 C -0.005 4.005 7 C 0.006 3.994 8 N -0.353 5.353 9 C 0.202 3.798 10 C -0.430 4.430 11 C 0.067 3.933 12 Cl -0.028 7.028 13 N -0.286 5.286 14 C 0.171 3.829 15 C -0.462 4.462 16 H 0.112 0.888 17 C -0.200 4.200 18 N -0.359 5.359 19 Si 0.819 3.181 20 H -0.185 1.185 21 H -0.188 1.188 22 H -0.179 1.179 23 N -0.398 5.398 24 H 0.112 0.888 25 H 0.169 0.831 26 H 0.180 0.820 27 H 0.259 0.741 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.095 0.905 32 H 0.240 0.760 33 H 0.163 0.837 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.575 -9.791 -0.011 16.737 hybrid contribution 0.280 -0.358 0.011 0.455 sum -13.295 -10.148 0.000 16.725 Atomic orbital electron populations 1.25018 0.95281 1.04124 0.87863 1.22896 0.96721 0.96235 1.08584 1.19418 0.82237 0.90784 0.75122 1.90786 1.69221 1.35421 1.52461 1.45582 1.06104 1.09790 1.74628 1.21183 0.89780 0.86910 1.02639 1.21379 0.89229 0.85697 1.03102 1.43898 1.00623 1.09007 1.81768 1.18401 0.85769 0.89025 0.86631 1.21199 0.92318 0.98549 1.30904 1.21922 0.88518 0.89390 0.93509 1.98286 1.76120 1.31843 1.96539 1.68583 1.39076 0.96494 1.24399 1.19857 0.83616 0.91612 0.87818 1.19698 0.91891 0.91495 1.43142 0.88752 1.27071 0.98110 1.02394 0.92446 1.70222 1.09001 1.29731 1.26980 0.84949 0.77427 0.76106 0.79664 1.18470 1.18804 1.17913 1.68240 1.10005 1.28376 1.33138 0.88840 0.83083 0.81959 0.74138 0.91482 0.91474 0.90485 0.90491 0.76012 0.83738 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 14.31 66.65 0.95 0.07 16 2 C -0.22 -2.71 10.03 23.43 0.23 -2.47 16 3 C 0.53 11.00 7.76 86.57 0.67 11.67 16 4 O -0.60 -18.05 16.22 -4.08 -0.07 -18.11 16 5 N -0.71 -11.66 5.55 -466.71 -2.59 -14.25 16 6 C 0.12 2.46 5.79 86.38 0.50 2.96 16 7 C 0.13 2.92 5.04 86.38 0.44 3.35 16 8 N -0.72 -23.20 5.71 -344.56 -1.97 -25.16 16 9 C 0.45 19.73 7.71 133.39 1.03 20.75 16 10 C -0.40 -16.93 9.23 22.84 0.21 -16.72 16 11 C 0.25 11.94 7.33 84.77 0.62 12.56 16 12 Cl -0.06 -2.27 29.15 -2.72 -0.08 -2.35 16 13 N -0.56 -31.64 7.86 -185.03 -1.45 -33.09 16 14 C 0.41 23.30 7.37 135.16 1.00 24.29 16 15 C -0.43 -23.53 9.37 23.53 0.22 -23.31 16 16 H 0.09 4.99 7.85 -2.91 -0.02 4.97 16 17 C 0.02 1.23 5.50 85.30 0.47 1.69 16 18 N -0.74 -39.14 11.42 21.84 0.25 -38.89 16 19 Si 1.00 37.48 29.56 68.60 2.03 39.51 16 20 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 21 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 N -0.67 -34.87 10.39 -191.53 -1.99 -36.86 16 24 H 0.09 1.39 7.49 -2.91 -0.02 1.37 16 25 H 0.15 0.48 8.06 -2.91 -0.02 0.45 16 26 H 0.16 0.78 8.06 -2.91 -0.02 0.76 16 27 H 0.42 4.05 8.46 -92.71 -0.78 3.26 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.07 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.08 1.61 7.97 -2.39 -0.02 1.59 16 31 H 0.08 1.60 7.97 -2.39 -0.02 1.59 16 32 H 0.40 12.58 8.60 -92.71 -0.80 11.79 16 33 H 0.14 4.99 6.85 -2.91 -0.02 4.97 16 34 H 0.28 13.53 8.29 -92.71 -0.77 12.76 16 Total: -1.00 -73.81 322.48 0.05 -73.76 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.42 Total: 20.61 kcal Atomic # 6 Polarization: 28.50 SS G_CDS: 6.34 Total: 34.84 kcal Atomic # 7 Polarization: -140.50 SS G_CDS: -7.75 Total: -148.26 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.07 Total: -18.11 kcal Atomic # 14 Polarization: 37.48 SS G_CDS: 2.03 Total: 39.51 kcal Atomic # 17 Polarization: -2.27 SS G_CDS: -0.08 Total: -2.35 kcal Total: -73.81 0.05 -73.76 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169802519.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.953 kcal (2) G-P(sol) polarization free energy of solvation -73.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds