Wall clock time and date at job start Fri Apr 10 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34963 * 125.52171 * 2 1 4 4 C 1.41205 * 108.23954 * 180.02562 * 3 2 1 5 5 N 1.32934 * 126.37790 * 179.97438 * 4 3 2 6 6 C 1.33835 * 120.00270 * 0.02562 * 5 4 3 7 7 O 1.21843 * 119.99616 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00620 * 180.02562 * 6 5 4 9 9 C 1.46506 * 119.99594 * 0.02562 * 8 6 5 10 10 C 1.46501 * 120.00308 * 180.02562 * 8 6 5 11 11 C 1.52995 * 109.46937 * 269.99876 * 10 8 6 12 12 H 1.08998 * 109.47344 * 305.00072 * 11 10 8 13 13 C 1.53001 * 109.47095 * 184.99556 * 11 10 8 14 14 O 1.42909 * 109.47082 * 64.99870 * 11 10 8 15 15 N 1.37416 * 107.24595 * 0.23984 * 4 3 2 16 16 H 0.97001 * 126.37184 * 179.76401 * 15 4 3 17 17 N 1.36446 * 125.52977 * 180.02562 * 2 1 3 18 18 C 1.46505 * 125.84860 * 0.02562 * 17 2 1 19 19 C 1.50704 * 109.46991 * 85.00391 * 18 17 2 20 20 H 1.08003 * 119.99639 * 359.97438 * 19 18 17 21 21 C 1.37873 * 119.99909 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99996 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99879 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46971 * 60.00126 * 23 21 19 25 25 H 1.48502 * 109.47029 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47226 * 300.00348 * 23 21 19 27 27 H 1.08994 * 109.47086 * 89.97494 * 1 2 3 28 28 H 1.09005 * 109.47242 * 209.97784 * 1 2 3 29 29 H 1.09006 * 109.47402 * 329.97439 * 1 2 3 30 30 H 1.07995 * 125.88345 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47060 * 90.00388 * 9 8 6 32 32 H 1.09004 * 109.47073 * 209.99877 * 9 8 6 33 33 H 1.09000 * 109.47212 * 329.99960 * 9 8 6 34 34 H 1.09000 * 109.46877 * 29.99967 * 10 8 6 35 35 H 1.09000 * 109.47251 * 150.00072 * 10 8 6 36 36 H 1.09003 * 109.46558 * 60.00321 * 13 11 10 37 37 H 1.09002 * 109.47137 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47446 * 300.00454 * 13 11 10 39 39 H 0.96701 * 113.99408 * 59.99630 * 14 11 10 40 40 H 1.09001 * 109.46979 * 204.99882 * 18 17 2 41 41 H 1.08999 * 109.47370 * 325.00144 * 18 17 2 42 42 H 0.97005 * 119.99504 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2911 1.0985 0.0000 4 6 3.6394 0.6790 -0.0006 5 7 4.7102 1.4667 -0.0013 6 6 4.5625 2.7969 -0.0009 7 8 3.4465 3.2858 0.0005 8 7 5.6481 3.5956 -0.0021 9 6 6.9900 3.0076 -0.0044 10 6 5.4863 5.0516 -0.0011 11 6 5.4279 5.5592 -1.4432 12 1 6.3117 5.2204 -1.9837 13 6 5.3843 7.0885 -1.4443 14 8 4.2550 5.0488 -2.0807 15 7 3.6386 -0.6952 -0.0065 16 1 4.4192 -1.2709 -0.0114 17 7 2.2999 -1.1104 -0.0005 18 6 1.8321 -2.4988 -0.0016 19 6 1.5549 -2.9343 -1.4175 20 1 1.7112 -2.2456 -2.2347 21 6 1.1019 -4.2118 -1.6696 22 7 0.9121 -5.0505 -0.6746 23 14 0.7577 -4.7514 -3.4246 24 1 2.0025 -4.6472 -4.2276 25 1 0.2848 -6.1591 -3.4259 26 1 -0.2871 -3.8770 -4.0154 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3634 0.8898 0.5142 30 1 1.9468 2.1220 0.0004 31 1 7.3213 2.8624 -1.0326 32 1 7.6807 3.6767 0.5088 33 1 6.9664 2.0464 0.5090 34 1 4.5623 5.3141 0.5142 35 1 6.3314 5.5108 0.5117 36 1 6.2789 7.4777 -0.9581 37 1 5.3432 7.4502 -2.4717 38 1 4.5005 7.4273 -0.9038 39 1 3.4288 5.3111 -1.6521 40 1 2.5986 -3.1408 0.4325 41 1 0.9181 -2.5747 0.5874 42 1 0.5930 -5.9492 -0.8520 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361697829.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:46 Heat of formation + Delta-G solvation = -1.574067 kcal Electronic energy + Delta-G solvation = -24127.392681 eV Core-core repulsion = 20530.579252 eV Total energy + Delta-G solvation = -3596.813429 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31522 -40.54031 -38.39456 -36.22775 -35.70091 -34.74239 -33.62912 -32.48979 -31.85955 -28.78456 -28.57864 -28.13386 -26.56053 -24.75682 -23.21380 -22.31133 -21.04699 -20.37508 -18.89855 -18.40086 -17.74947 -17.59992 -17.04729 -16.63907 -16.45964 -16.19255 -15.87327 -15.54522 -15.01075 -14.72380 -14.36520 -14.23694 -14.18950 -13.86982 -13.68376 -13.56683 -13.35145 -13.16582 -12.99056 -12.89242 -12.88202 -12.70603 -12.47307 -12.27999 -12.05372 -11.82914 -11.15592 -11.06395 -11.04777 -10.76205 -10.26302 -9.76210 -9.34842 -8.50739 -8.15351 -6.54584 0.33178 0.62464 1.39637 1.42024 1.49340 1.69043 2.25679 2.32748 2.93120 3.00876 3.22679 3.59323 3.73640 3.94307 4.15860 4.24778 4.28119 4.35318 4.42241 4.52686 4.64468 4.70830 4.74948 4.85335 4.87065 4.91268 4.93065 4.98120 5.09257 5.14310 5.19285 5.30831 5.36535 5.52653 5.72341 5.89799 5.99699 6.21413 6.36701 6.59794 6.85946 6.89835 7.09645 7.19027 8.20338 8.67659 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.024548 B = 0.003198 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1140.357897 B = 8754.277213 C = 8826.454472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.193 3.807 3 C -0.346 4.346 4 C 0.473 3.527 5 N -0.721 5.721 6 C 0.676 3.324 7 O -0.649 6.649 8 N -0.616 5.616 9 C 0.102 3.898 10 C 0.101 3.899 11 C 0.082 3.918 12 H 0.087 0.913 13 C -0.171 4.171 14 O -0.581 6.581 15 N -0.471 5.471 16 H 0.450 0.550 17 N -0.353 5.353 18 C 0.270 3.730 19 C -0.563 4.563 20 H 0.056 0.944 21 C 0.033 3.967 22 N -0.913 5.913 23 Si 0.961 3.039 24 H -0.278 1.278 25 H -0.278 1.278 26 H -0.267 1.267 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.174 0.826 31 H 0.038 0.962 32 H 0.089 0.911 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.380 0.620 40 H 0.040 0.960 41 H 0.069 0.931 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.903 15.332 2.685 16.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.068 3.932 3 C -0.378 4.378 4 C 0.220 3.780 5 N -0.485 5.485 6 C 0.377 3.623 7 O -0.533 6.533 8 N -0.351 5.351 9 C -0.041 4.041 10 C -0.023 4.023 11 C 0.022 3.978 12 H 0.105 0.895 13 C -0.229 4.229 14 O -0.387 6.387 15 N -0.195 5.195 16 H 0.298 0.702 17 N -0.140 5.140 18 C 0.152 3.848 19 C -0.601 4.601 20 H 0.074 0.926 21 C -0.170 4.170 22 N -0.550 5.550 23 Si 0.786 3.214 24 H -0.203 1.203 25 H -0.203 1.203 26 H -0.192 1.192 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.192 0.808 31 H 0.057 0.943 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.228 0.772 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.565 14.532 2.366 16.120 hybrid contribution -0.509 -0.533 -0.561 0.926 sum 6.056 13.998 1.804 15.359 Atomic orbital electron populations 1.20748 0.83838 1.05292 1.04979 1.21817 0.95912 0.84637 0.90849 1.22091 0.91273 1.00166 1.24277 1.18937 0.91640 0.82458 0.84969 1.68104 1.28622 1.04518 1.47281 1.16801 0.83436 0.85034 0.77045 1.90628 1.25107 1.78754 1.58772 1.46640 1.05695 1.05501 1.77219 1.21561 0.82071 0.99517 1.00952 1.22207 1.03785 0.78891 0.97404 1.22463 0.88335 0.94006 0.93019 0.89473 1.22350 1.03820 0.93781 1.02953 1.86540 1.16896 1.78081 1.57218 1.44340 0.98887 1.04682 1.71544 0.70175 1.47711 0.93097 1.07801 1.65409 1.19656 0.96081 0.71033 0.97984 1.21515 1.47326 0.98634 0.92600 0.92618 1.25565 0.94186 0.95881 1.01357 1.69955 1.44909 1.07233 1.32933 0.85543 0.78745 0.77604 0.79482 1.20301 1.20293 1.19171 0.88643 0.89861 0.86857 0.80849 0.94307 0.89275 0.91745 0.91274 0.87025 0.89395 0.91996 0.91740 0.77216 0.94165 0.91368 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.52 10.09 71.24 0.72 -1.80 16 2 C 0.19 7.05 6.92 41.09 0.28 7.33 16 3 C -0.35 -13.86 9.41 22.25 0.21 -13.65 16 4 C 0.47 19.65 8.07 133.95 1.08 20.73 16 5 N -0.72 -30.10 9.23 -322.55 -2.98 -33.08 16 6 C 0.68 27.57 7.81 179.35 1.40 28.97 16 7 O -0.65 -28.28 11.81 2.63 0.03 -28.25 16 8 N -0.62 -19.47 2.86 -865.53 -2.47 -21.94 16 9 C 0.10 2.58 10.46 127.77 1.34 3.92 16 10 C 0.10 2.40 5.16 86.38 0.45 2.85 16 11 C 0.08 1.90 3.83 30.59 0.12 2.01 16 12 H 0.09 2.06 8.14 -2.39 -0.02 2.05 16 13 C -0.17 -2.64 9.53 71.98 0.69 -1.96 16 14 O -0.58 -18.31 12.20 -141.54 -1.73 -20.03 16 15 N -0.47 -18.03 7.38 -54.79 -0.40 -18.43 16 16 H 0.45 15.29 8.96 -213.28 -1.91 13.37 16 17 N -0.35 -13.88 3.63 -337.53 -1.23 -15.11 16 18 C 0.27 11.59 5.93 85.63 0.51 12.09 16 19 C -0.56 -27.10 9.39 25.60 0.24 -26.86 16 20 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.03 1.58 5.46 84.65 0.46 2.04 16 22 N -0.91 -46.33 13.29 21.45 0.28 -46.04 16 23 Si 0.96 39.44 29.54 68.60 2.03 41.47 16 24 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 27 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.08 2.27 7.14 -2.38 -0.02 2.25 16 29 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 30 H 0.17 7.28 5.77 -2.91 -0.02 7.26 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 1.54 7.89 -2.38 -0.02 1.52 16 33 H 0.06 1.84 7.31 -2.39 -0.02 1.82 16 34 H 0.07 1.85 7.42 -2.39 -0.02 1.83 16 35 H 0.11 1.79 7.89 -2.39 -0.02 1.78 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.38 10.93 8.74 -74.06 -0.65 10.29 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 2.92 7.18 -2.39 -0.02 2.90 16 42 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 Total: -1.00 -65.50 352.87 -0.49 -65.98 By element: Atomic # 1 Polarization: 41.25 SS G_CDS: -1.51 Total: 39.74 kcal Atomic # 6 Polarization: 28.20 SS G_CDS: 7.49 Total: 35.69 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -6.79 Total: -134.60 kcal Atomic # 8 Polarization: -46.59 SS G_CDS: -1.70 Total: -48.28 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -65.50 -0.49 -65.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361697829.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.410 kcal (2) G-P(sol) polarization free energy of solvation -65.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds