Wall clock time and date at job start Fri Apr 10 2020 17:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 119.99902 * 2 1 4 4 N 1.34772 * 120.00251 * 179.97438 * 2 1 3 5 5 C 1.46934 * 120.63319 * 355.90358 * 4 2 1 6 6 C 1.53189 * 108.77301 * 233.58870 * 5 4 2 7 7 C 1.53039 * 109.33903 * 305.34191 * 6 5 4 8 8 C 1.53098 * 109.50204 * 61.35186 * 7 6 5 9 9 C 1.46927 * 120.63473 * 175.87865 * 4 2 1 10 10 H 1.09002 * 109.59142 * 246.20672 * 9 4 2 11 11 C 1.50707 * 109.58505 * 6.48356 * 9 4 2 12 12 O 1.21282 * 119.99778 * 66.83085 * 11 9 4 13 13 N 1.34777 * 120.00181 * 246.83078 * 11 9 4 14 14 C 1.47064 * 136.05635 * 359.62888 * 13 11 9 15 15 C 1.53751 * 87.88807 * 152.96090 * 14 13 11 16 16 O 1.42908 * 114.39812 * 272.67814 * 15 14 13 17 17 C 1.50699 * 114.08655 * 139.78059 * 15 14 13 18 18 H 1.08004 * 120.00108 * 266.56340 * 17 15 14 19 19 C 1.37875 * 120.00336 * 86.56297 * 17 15 14 20 20 N 1.31516 * 119.99724 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00317 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47549 * 120.00000 * 21 19 17 24 24 H 1.48501 * 109.47319 * 240.00356 * 21 19 17 25 25 C 1.47066 * 136.05597 * 179.97438 * 13 11 9 26 26 H 1.09002 * 109.47221 * 240.00146 * 1 2 3 27 27 H 1.08998 * 109.47425 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46699 * 120.00061 * 1 2 3 29 29 H 1.08992 * 109.58684 * 113.79182 * 5 4 2 30 30 H 1.09005 * 109.57948 * 353.37012 * 5 4 2 31 31 H 1.08992 * 109.50227 * 65.31276 * 6 5 4 32 32 H 1.09004 * 109.49453 * 185.37548 * 6 5 4 33 33 H 1.08997 * 109.45899 * 181.41060 * 7 6 5 34 34 H 1.09002 * 109.45957 * 301.36598 * 7 6 5 35 35 H 1.09002 * 109.48962 * 178.70080 * 8 7 6 36 36 H 1.09000 * 109.48898 * 58.61638 * 8 7 6 37 37 H 1.08999 * 113.47007 * 267.69616 * 14 13 11 38 38 H 1.09002 * 113.46515 * 38.13820 * 14 13 11 39 39 H 0.96694 * 113.99527 * 273.58600 * 16 15 14 40 40 H 0.96998 * 119.99632 * 180.02562 * 20 19 17 41 41 H 1.08993 * 113.47165 * 321.86635 * 25 13 11 42 42 H 1.08996 * 113.46434 * 92.25319 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4632 -2.4460 0.0914 6 6 2.0439 -3.2556 1.2550 7 6 3.5565 -3.3964 1.0694 8 6 4.2035 -2.0089 1.0752 9 6 3.6472 -1.1850 -0.0903 10 1 3.9494 -1.6376 -1.0348 11 6 4.1753 0.2244 -0.0139 12 8 4.0602 0.8603 1.0124 13 7 4.7755 0.7782 -1.0861 14 6 5.1024 0.3511 -2.4549 15 6 5.0349 1.8295 -2.8715 16 8 3.7289 2.2812 -3.2356 17 6 6.1054 2.2427 -3.8484 18 1 7.0301 2.6689 -3.4880 19 6 5.9046 2.0767 -5.2023 20 7 4.7785 1.5582 -5.6412 21 14 7.2312 2.5894 -6.4132 22 1 8.3928 3.1414 -5.6705 23 1 7.6647 1.4084 -7.2021 24 1 6.6913 3.6258 -7.3295 25 6 5.3972 2.0735 -1.4001 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.5871 -3.0014 -0.8382 30 1 0.4041 -2.2588 0.2692 31 1 1.8389 -2.7416 2.1940 32 1 1.5861 -4.2447 1.2742 33 1 3.9682 -3.9935 1.8830 34 1 3.7614 -3.8884 0.1185 35 1 5.2832 -2.1106 0.9661 36 1 3.9781 -1.5066 2.0160 37 1 6.0986 -0.0812 -2.5485 38 1 4.3296 -0.2662 -2.9131 39 1 3.5036 2.1262 -4.1631 40 1 4.6373 1.4410 -6.5937 41 1 4.8758 2.9234 -0.9600 42 1 6.4710 2.0959 -1.2146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408077695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:52 Heat of formation + Delta-G solvation = -70.658072 kcal Electronic energy + Delta-G solvation = -25723.065480 eV Core-core repulsion = 22090.963593 eV Total energy + Delta-G solvation = -3632.101887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.57926 -38.87433 -37.25011 -36.71651 -33.83081 -32.96792 -32.10149 -31.64787 -29.33796 -28.51014 -25.82598 -24.98037 -24.79969 -23.40337 -21.07048 -20.32396 -19.01348 -18.00694 -17.46599 -16.61076 -16.17963 -15.88247 -15.20618 -15.17263 -14.83547 -14.32819 -14.17983 -14.03972 -13.86675 -13.59990 -13.19403 -13.11821 -12.58005 -12.44842 -12.28323 -12.10947 -11.93900 -11.74203 -11.48422 -11.46070 -11.15563 -11.03875 -10.97893 -10.84334 -10.78715 -10.40676 -10.14071 -9.42934 -9.15673 -8.92904 -8.66609 -8.51326 -8.20970 -7.56420 -6.33270 -4.43433 2.83067 2.94417 3.16534 3.25822 3.30160 3.71684 3.80700 4.22926 4.59057 4.63456 4.75702 4.89651 4.90653 5.02409 5.16625 5.18781 5.29145 5.37548 5.39489 5.46903 5.63424 5.71146 5.74488 5.76357 5.87119 5.92791 5.95799 6.07869 6.25874 6.36151 6.53139 6.61059 6.64190 6.83420 6.86114 7.23402 7.54163 7.70089 7.90951 8.46576 8.60138 8.83519 9.13262 9.28085 9.62954 10.72926 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.004549 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.725886 B = 6153.535899 C = 6353.698109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.495 3.505 3 O -0.484 6.484 4 N -0.609 5.609 5 C 0.111 3.889 6 C -0.136 4.136 7 C -0.117 4.117 8 C -0.120 4.120 9 C 0.134 3.866 10 H 0.082 0.918 11 C 0.560 3.440 12 O -0.548 6.548 13 N -0.632 5.632 14 C 0.071 3.929 15 C 0.242 3.758 16 O -0.565 6.565 17 C -0.530 4.530 18 H 0.072 0.928 19 C 0.071 3.929 20 N -0.899 5.899 21 Si 0.908 3.092 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.281 1.281 25 C 0.112 3.888 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.057 0.943 39 H 0.390 0.610 40 H 0.272 0.728 41 H 0.064 0.936 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.292 -12.780 8.052 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.283 3.717 3 O -0.356 6.356 4 N -0.347 5.347 5 C -0.012 4.012 6 C -0.174 4.174 7 C -0.155 4.155 8 C -0.159 4.159 9 C 0.028 3.972 10 H 0.100 0.900 11 C 0.349 3.651 12 O -0.427 6.427 13 N -0.366 5.366 14 C -0.053 4.053 15 C 0.200 3.800 16 O -0.378 6.378 17 C -0.569 4.569 18 H 0.090 0.910 19 C -0.131 4.131 20 N -0.540 5.540 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.010 4.010 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.104 0.896 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.245 0.755 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.273 -11.796 9.231 16.239 hybrid contribution 0.613 -0.308 -1.395 1.555 sum -5.659 -12.104 7.835 15.489 Atomic orbital electron populations 1.21888 0.91879 1.05321 1.03449 1.20916 0.90670 0.83448 0.76673 1.90931 1.68256 1.30407 1.46029 1.48001 1.05065 1.06378 1.75295 1.21731 0.96506 0.84209 0.98758 1.21939 0.96358 1.00183 0.98969 1.21517 0.95101 0.96531 1.02329 1.21807 1.00205 0.95180 0.98697 1.21087 0.80951 0.95542 0.99669 0.89992 1.19047 0.77494 0.86363 0.82208 1.90598 1.58751 1.62659 1.30698 1.49477 1.56628 1.18009 1.12508 1.24185 0.98839 1.03274 0.78981 1.19543 0.83295 0.87674 0.89503 1.86113 1.32532 1.83967 1.35146 1.21525 1.02031 1.42290 0.91021 0.90967 1.25078 0.96098 0.93445 0.98501 1.69299 1.24707 1.44521 1.15505 0.86281 0.81354 0.78387 0.80486 1.19417 1.20738 1.20658 1.23182 0.96459 0.85836 0.95541 0.89921 0.89077 0.89593 0.91265 0.89438 0.91325 0.90635 0.91309 0.91557 0.90653 0.90316 0.90487 0.92462 0.75457 0.91787 0.91756 0.90274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 8.70 36.00 0.31 -1.67 16 2 C 0.50 8.85 7.68 -10.99 -0.08 8.76 16 3 O -0.48 -11.66 12.66 -19.18 -0.24 -11.90 16 4 N -0.61 -9.32 2.97 -166.53 -0.49 -9.81 16 5 C 0.11 1.09 6.33 -3.71 -0.02 1.07 16 6 C -0.14 -1.16 6.08 -26.61 -0.16 -1.33 16 7 C -0.12 -1.13 5.89 -26.66 -0.16 -1.28 16 8 C -0.12 -1.64 5.29 -26.58 -0.14 -1.78 16 9 C 0.13 2.29 3.27 -68.75 -0.23 2.06 16 10 H 0.08 1.35 7.42 -51.93 -0.39 0.97 16 11 C 0.56 12.57 4.60 -10.98 -0.05 12.52 16 12 O -0.55 -14.10 15.35 -19.18 -0.29 -14.40 16 13 N -0.63 -14.77 3.69 -185.06 -0.68 -15.45 16 14 C 0.07 1.62 7.42 -8.37 -0.06 1.56 16 15 C 0.24 6.20 1.59 -91.13 -0.14 6.06 16 16 O -0.57 -15.79 13.55 -35.23 -0.48 -16.27 16 17 C -0.53 -13.81 8.69 -34.44 -0.30 -14.11 16 18 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 19 C 0.07 1.81 5.40 -17.82 -0.10 1.71 16 20 N -0.90 -23.44 11.01 55.43 0.61 -22.83 16 21 Si 0.91 19.82 29.54 -169.99 -5.02 14.80 16 22 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 C 0.11 2.72 8.02 -8.51 -0.07 2.65 16 26 H 0.08 0.75 7.52 -51.93 -0.39 0.36 16 27 H 0.09 1.15 8.12 -51.93 -0.42 0.73 16 28 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 0.66 5.96 -51.93 -0.31 0.35 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 37 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 38 H 0.06 1.32 8.06 -51.93 -0.42 0.90 16 39 H 0.39 10.84 6.33 45.56 0.29 11.12 16 40 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.06 1.66 8.14 -51.93 -0.42 1.23 16 42 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -34.42 337.70 -8.52 -42.95 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: -5.81 Total: 11.62 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: -1.20 Total: 16.22 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: -0.57 Total: -48.10 kcal Atomic # 8 Polarization: -41.56 SS G_CDS: -1.01 Total: -42.57 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.42 -8.52 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408077695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.712 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds