Wall clock time and date at job start Fri Apr 10 2020 17:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 119.99902 * 2 1 4 4 N 1.34772 * 120.00251 * 179.97438 * 2 1 3 5 5 C 1.46934 * 120.63319 * 355.90358 * 4 2 1 6 6 C 1.53189 * 108.77301 * 233.58870 * 5 4 2 7 7 C 1.53039 * 109.33903 * 305.34191 * 6 5 4 8 8 C 1.53098 * 109.50204 * 61.35186 * 7 6 5 9 9 C 1.46927 * 120.63473 * 175.87865 * 4 2 1 10 10 H 1.09002 * 109.59142 * 246.20672 * 9 4 2 11 11 C 1.50707 * 109.58505 * 6.48356 * 9 4 2 12 12 O 1.21282 * 119.99778 * 66.83085 * 11 9 4 13 13 N 1.34777 * 120.00181 * 246.83078 * 11 9 4 14 14 C 1.47064 * 136.05635 * 359.62888 * 13 11 9 15 15 C 1.53751 * 87.88807 * 152.96090 * 14 13 11 16 16 O 1.42908 * 114.39812 * 272.67814 * 15 14 13 17 17 C 1.50699 * 114.08655 * 139.78059 * 15 14 13 18 18 H 1.08004 * 120.00108 * 266.56340 * 17 15 14 19 19 C 1.37875 * 120.00336 * 86.56297 * 17 15 14 20 20 N 1.31516 * 119.99724 * 0.02562 * 19 17 15 21 21 Si 1.86793 * 120.00317 * 179.97438 * 19 17 15 22 22 H 1.48511 * 109.47202 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47549 * 120.00000 * 21 19 17 24 24 H 1.48501 * 109.47319 * 240.00356 * 21 19 17 25 25 C 1.47066 * 136.05597 * 179.97438 * 13 11 9 26 26 H 1.09002 * 109.47221 * 240.00146 * 1 2 3 27 27 H 1.08998 * 109.47425 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46699 * 120.00061 * 1 2 3 29 29 H 1.08992 * 109.58684 * 113.79182 * 5 4 2 30 30 H 1.09005 * 109.57948 * 353.37012 * 5 4 2 31 31 H 1.08992 * 109.50227 * 65.31276 * 6 5 4 32 32 H 1.09004 * 109.49453 * 185.37548 * 6 5 4 33 33 H 1.08997 * 109.45899 * 181.41060 * 7 6 5 34 34 H 1.09002 * 109.45957 * 301.36598 * 7 6 5 35 35 H 1.09002 * 109.48962 * 178.70080 * 8 7 6 36 36 H 1.09000 * 109.48898 * 58.61638 * 8 7 6 37 37 H 1.08999 * 113.47007 * 267.69616 * 14 13 11 38 38 H 1.09002 * 113.46515 * 38.13820 * 14 13 11 39 39 H 0.96694 * 113.99527 * 273.58600 * 16 15 14 40 40 H 0.96998 * 119.99632 * 180.02562 * 20 19 17 41 41 H 1.08993 * 113.47165 * 321.86635 * 25 13 11 42 42 H 1.08996 * 113.46434 * 92.25319 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 1.4632 -2.4460 0.0914 6 6 2.0439 -3.2556 1.2550 7 6 3.5565 -3.3964 1.0694 8 6 4.2035 -2.0089 1.0752 9 6 3.6472 -1.1850 -0.0903 10 1 3.9494 -1.6376 -1.0348 11 6 4.1753 0.2244 -0.0139 12 8 4.0602 0.8603 1.0124 13 7 4.7755 0.7782 -1.0861 14 6 5.1024 0.3511 -2.4549 15 6 5.0349 1.8295 -2.8715 16 8 3.7289 2.2812 -3.2356 17 6 6.1054 2.2427 -3.8484 18 1 7.0301 2.6689 -3.4880 19 6 5.9046 2.0767 -5.2023 20 7 4.7785 1.5582 -5.6412 21 14 7.2312 2.5894 -6.4132 22 1 8.3928 3.1414 -5.6705 23 1 7.6647 1.4084 -7.2021 24 1 6.6913 3.6258 -7.3295 25 6 5.3972 2.0735 -1.4001 26 1 -0.3634 -0.5138 0.8900 27 1 -0.3634 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.5871 -3.0014 -0.8382 30 1 0.4041 -2.2588 0.2692 31 1 1.8389 -2.7416 2.1940 32 1 1.5861 -4.2447 1.2742 33 1 3.9682 -3.9935 1.8830 34 1 3.7614 -3.8884 0.1185 35 1 5.2832 -2.1106 0.9661 36 1 3.9781 -1.5066 2.0160 37 1 6.0986 -0.0812 -2.5485 38 1 4.3296 -0.2662 -2.9131 39 1 3.5036 2.1262 -4.1631 40 1 4.6373 1.4410 -6.5937 41 1 4.8758 2.9234 -0.9600 42 1 6.4710 2.0959 -1.2146 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408077695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:52 Heat of formation + Delta-G solvation = -96.102940 kcal Electronic energy + Delta-G solvation = -25724.168852 eV Core-core repulsion = 22090.963593 eV Total energy + Delta-G solvation = -3633.205259 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.99870 -40.63084 -38.73094 -38.22423 -35.86929 -34.14506 -34.09058 -32.80601 -30.37191 -30.30827 -27.51187 -26.85364 -26.08725 -24.55102 -22.25094 -21.89840 -20.43185 -19.64221 -19.31638 -18.20532 -17.68271 -17.26951 -17.09693 -16.45303 -16.30663 -15.94736 -15.89797 -15.12621 -15.06300 -14.91964 -14.70585 -14.40729 -14.17620 -13.91159 -13.86218 -13.49541 -13.42265 -13.18771 -13.00431 -12.81222 -12.75571 -12.51915 -12.24608 -12.15002 -12.09993 -11.75679 -11.64335 -11.32958 -10.83690 -10.61499 -10.55833 -10.19149 -9.74015 -9.44883 -8.28185 -6.46425 1.44981 1.47275 1.50402 1.60515 1.64100 2.04314 2.28480 2.40280 2.93084 3.33092 3.68769 3.77837 3.79371 3.87950 4.00735 4.08098 4.12798 4.18061 4.37838 4.45913 4.46597 4.58760 4.60134 4.64800 4.75020 4.79484 4.83579 4.87539 4.92853 4.96749 5.06237 5.12019 5.17453 5.21678 5.41974 5.47274 5.71046 5.90033 6.36365 6.59861 7.02107 7.15825 7.27741 7.41470 7.49065 8.78475 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.022598 B = 0.004549 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.725886 B = 6153.535899 C = 6353.698109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.476 3.524 3 O -0.563 6.563 4 N -0.607 5.607 5 C 0.100 3.900 6 C -0.132 4.132 7 C -0.112 4.112 8 C -0.115 4.115 9 C 0.135 3.865 10 H 0.089 0.911 11 C 0.551 3.449 12 O -0.589 6.589 13 N -0.639 5.639 14 C 0.090 3.910 15 C 0.223 3.777 16 O -0.585 6.585 17 C -0.553 4.553 18 H 0.074 0.926 19 C 0.031 3.969 20 N -0.919 5.919 21 Si 0.975 3.025 22 H -0.267 1.267 23 H -0.272 1.272 24 H -0.281 1.281 25 C 0.109 3.891 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.096 0.904 38 H 0.053 0.947 39 H 0.386 0.614 40 H 0.277 0.723 41 H 0.034 0.966 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.777 -15.927 7.596 18.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.266 3.734 3 O -0.441 6.441 4 N -0.343 5.343 5 C -0.020 4.020 6 C -0.170 4.170 7 C -0.149 4.149 8 C -0.153 4.153 9 C 0.028 3.972 10 H 0.107 0.893 11 C 0.343 3.657 12 O -0.471 6.471 13 N -0.373 5.373 14 C -0.033 4.033 15 C 0.182 3.818 16 O -0.398 6.398 17 C -0.591 4.591 18 H 0.092 0.908 19 C -0.169 4.169 20 N -0.560 5.560 21 Si 0.800 3.200 22 H -0.191 1.191 23 H -0.198 1.198 24 H -0.207 1.207 25 C -0.014 4.014 26 H 0.138 0.862 27 H 0.097 0.903 28 H 0.133 0.867 29 H 0.105 0.895 30 H 0.135 0.865 31 H 0.078 0.922 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.241 0.759 40 H 0.087 0.913 41 H 0.053 0.947 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -6.783 -15.027 8.785 18.681 hybrid contribution 0.716 0.680 -1.219 1.568 sum -6.067 -14.347 7.566 17.317 Atomic orbital electron populations 1.21893 0.87292 1.05624 1.06491 1.22070 0.93079 0.82990 0.75220 1.90893 1.70015 1.33197 1.49960 1.48273 1.04341 1.07966 1.73738 1.22228 0.97623 0.81800 1.00379 1.21959 0.95531 1.01736 0.97741 1.21548 0.95749 0.93644 1.03965 1.21820 1.00745 0.96984 0.95791 1.21091 0.82615 0.91952 1.01527 0.89283 1.20074 0.76239 0.88276 0.81110 1.90551 1.59877 1.64418 1.32226 1.49613 1.57106 1.17501 1.13123 1.23960 0.99565 1.01398 0.78398 1.19828 0.82400 0.89618 0.89955 1.86107 1.34143 1.84593 1.34908 1.21697 1.02181 1.43423 0.91783 0.90807 1.25821 0.98134 0.93074 0.99835 1.69354 1.25956 1.44553 1.16138 0.85240 0.78666 0.78073 0.78022 1.19099 1.19756 1.20728 1.23202 0.97372 0.85849 0.94990 0.86223 0.90345 0.86725 0.89491 0.86535 0.92235 0.86821 0.89261 0.90161 0.90417 0.92720 0.88618 0.92864 0.75879 0.91301 0.94714 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.70 71.24 0.62 -2.78 16 2 C 0.48 17.08 7.68 87.66 0.67 17.75 16 3 O -0.56 -28.55 12.66 20.63 0.26 -28.28 16 4 N -0.61 -17.81 2.97 -799.17 -2.38 -20.18 16 5 C 0.10 1.58 6.33 86.36 0.55 2.13 16 6 C -0.13 -1.69 6.08 30.67 0.19 -1.50 16 7 C -0.11 -1.75 5.89 30.64 0.18 -1.57 16 8 C -0.11 -3.01 5.29 30.69 0.16 -2.85 16 9 C 0.14 4.57 3.27 44.23 0.14 4.71 16 10 H 0.09 2.85 7.42 -2.39 -0.02 2.84 16 11 C 0.55 25.71 4.60 87.66 0.40 26.11 16 12 O -0.59 -32.05 15.35 20.62 0.32 -31.73 16 13 N -0.64 -30.98 3.69 -858.27 -3.16 -34.14 16 14 C 0.09 4.17 7.42 83.27 0.62 4.79 16 15 C 0.22 11.80 1.59 -11.13 -0.02 11.78 16 16 O -0.59 -34.11 13.55 -148.98 -2.02 -36.13 16 17 C -0.55 -29.09 8.69 25.60 0.22 -28.87 16 18 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 19 C 0.03 1.60 5.40 84.65 0.46 2.05 16 20 N -0.92 -47.93 11.01 21.45 0.24 -47.69 16 21 Si 0.98 40.19 29.54 68.60 2.03 42.21 16 22 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 24 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 25 C 0.11 5.53 8.02 83.18 0.67 6.20 16 26 H 0.12 1.73 7.52 -2.39 -0.02 1.72 16 27 H 0.08 1.95 8.12 -2.39 -0.02 1.93 16 28 H 0.11 1.87 8.09 -2.38 -0.02 1.85 16 29 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.12 1.18 5.96 -2.38 -0.01 1.17 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.05 1.69 7.85 -2.39 -0.02 1.68 16 37 H 0.10 4.04 8.10 -2.39 -0.02 4.02 16 38 H 0.05 2.48 8.06 -2.39 -0.02 2.46 16 39 H 0.39 22.27 6.33 -74.06 -0.47 21.80 16 40 H 0.28 13.48 8.31 -92.71 -0.77 12.71 16 41 H 0.03 1.91 8.14 -2.39 -0.02 1.90 16 42 H 0.10 4.53 8.10 -2.39 -0.02 4.52 16 Total: -1.00 -80.60 337.70 0.70 -79.89 By element: Atomic # 1 Polarization: 37.55 SS G_CDS: 0.56 Total: 38.11 kcal Atomic # 6 Polarization: 33.09 SS G_CDS: 4.86 Total: 37.95 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -5.30 Total: -102.02 kcal Atomic # 8 Polarization: -94.70 SS G_CDS: -1.44 Total: -96.14 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.21 kcal Total: -80.60 0.70 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408077695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.209 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds