Wall clock time and date at job start Fri Apr 10 2020 17:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.52492 * 2 1 4 4 C 1.53045 * 109.49742 * 239.91883 * 2 1 3 5 5 C 1.53043 * 109.53314 * 178.68136 * 4 2 1 6 6 C 1.52760 * 109.38344 * 61.24280 * 5 4 2 7 7 N 1.46918 * 109.00976 * 305.58519 * 6 5 4 8 8 C 1.34774 * 120.63312 * 233.58855 * 7 6 5 9 9 O 1.21344 * 120.00353 * 181.67415 * 8 7 6 10 10 C 1.49455 * 119.99866 * 1.66601 * 8 7 6 11 11 O 1.21348 * 119.99793 * 353.07457 * 10 8 7 12 12 N 1.34768 * 120.00210 * 172.79300 * 10 8 7 13 13 C 1.47068 * 136.05899 * 359.91223 * 12 10 8 14 14 C 1.53759 * 87.89031 * 152.95771 * 13 12 10 15 15 O 1.42898 * 114.39366 * 272.67560 * 14 13 12 16 16 C 1.50698 * 114.08475 * 139.77949 * 14 13 12 17 17 H 1.07997 * 120.00013 * 266.56385 * 16 14 13 18 18 C 1.37885 * 119.99906 * 86.56307 * 16 14 13 19 19 N 1.31515 * 119.99660 * 180.02562 * 18 16 14 20 20 Si 1.86795 * 120.00002 * 359.97438 * 18 16 14 21 21 H 1.48506 * 109.47006 * 90.00072 * 20 18 16 22 22 H 1.48501 * 109.47294 * 209.99888 * 20 18 16 23 23 H 1.48503 * 109.47366 * 330.00205 * 20 18 16 24 24 C 1.47067 * 136.06058 * 180.27283 * 12 10 8 25 25 C 1.46924 * 118.73844 * 53.30638 * 7 6 5 26 26 H 1.08998 * 109.47482 * 299.91652 * 1 2 3 27 27 H 1.09002 * 109.47292 * 59.92315 * 1 2 3 28 28 H 1.08997 * 109.47249 * 179.91838 * 1 2 3 29 29 H 1.08993 * 109.46230 * 298.70104 * 4 2 1 30 30 H 1.09002 * 109.45872 * 58.66730 * 4 2 1 31 31 H 1.09006 * 109.48976 * 181.31498 * 5 4 2 32 32 H 1.08997 * 109.50114 * 301.38054 * 5 4 2 33 33 H 1.08995 * 109.50598 * 185.69932 * 6 5 4 34 34 H 1.09006 * 109.43176 * 65.41824 * 6 5 4 35 35 H 1.09004 * 113.46915 * 267.69543 * 13 12 10 36 36 H 1.08999 * 113.46674 * 38.13072 * 13 12 10 37 37 H 0.96698 * 114.00022 * 273.58580 * 15 14 13 38 38 H 0.97001 * 119.99769 * 180.02562 * 19 18 16 39 39 H 1.09003 * 113.46937 * 321.87682 * 24 12 10 40 40 H 1.08998 * 113.46685 * 92.24643 * 24 12 10 41 41 H 1.08997 * 109.58628 * 66.43464 * 25 7 6 42 42 H 1.09004 * 109.58700 * 186.71255 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5709 -0.6949 -1.2660 6 6 4.1055 -1.4215 -0.0332 7 7 3.5046 -0.8291 1.1696 8 6 4.2811 -0.3855 2.1779 9 8 3.7719 0.0739 3.1789 10 6 5.7694 -0.4596 2.0632 11 8 6.2776 -1.0315 1.1213 12 7 6.5470 0.1136 3.0028 13 6 6.3246 0.8745 4.2416 14 6 7.6836 0.3540 4.7381 15 8 7.6241 -0.9085 5.4049 16 6 8.5043 1.3817 5.4736 17 1 9.2332 1.9734 4.9399 18 6 8.3246 1.5666 6.8282 19 7 9.0406 2.4639 7.4700 20 14 7.0634 0.5437 7.7512 21 1 7.7061 -0.6956 8.2576 22 1 6.5310 1.3278 8.8945 23 1 5.9505 0.1855 6.8356 24 6 7.9916 0.2592 3.2374 25 6 2.0413 -0.7238 1.2495 26 1 -0.3634 0.5125 0.8907 27 1 -0.3634 0.5150 -0.8893 28 1 -0.3633 -1.0276 -0.0015 29 1 1.6968 -1.7573 -1.2353 30 1 1.6582 -0.2244 -2.1389 31 1 3.9334 -1.1897 -2.1671 32 1 3.9159 0.3389 -1.2546 33 1 5.1895 -1.3159 0.0100 34 1 3.8412 -2.4774 -0.0915 35 1 6.3022 1.9537 4.0901 36 1 5.4794 0.5129 4.8272 37 1 7.4299 -0.8453 6.3501 38 1 8.9145 2.5938 8.4229 39 1 8.5666 -0.6266 2.9673 40 1 8.4089 1.1756 2.8202 41 1 1.6053 -1.7216 1.2980 42 1 1.7637 -0.1601 2.1402 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408157685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:59 Heat of formation + Delta-G solvation = -48.845401 kcal Electronic energy + Delta-G solvation = -24928.356691 eV Core-core repulsion = 21297.200672 eV Total energy + Delta-G solvation = -3631.156019 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.82222 -39.49070 -37.84535 -37.57508 -34.76118 -33.71292 -32.57439 -31.99123 -29.42198 -27.35973 -26.36297 -25.55951 -25.24846 -22.67319 -22.40751 -20.51499 -19.81660 -18.79477 -17.59087 -16.97623 -16.75716 -16.30736 -15.87388 -15.71943 -15.34717 -14.61177 -14.41953 -14.32366 -13.81607 -13.76995 -13.48383 -13.25284 -12.99266 -12.89147 -12.77107 -12.42768 -12.36458 -12.23804 -11.96763 -11.46638 -11.26163 -11.22222 -11.05460 -10.98880 -10.61769 -10.57296 -10.37781 -10.12038 -9.53801 -9.18660 -8.88925 -8.75954 -8.55477 -8.25877 -6.44944 -4.51658 1.69164 2.42861 3.00247 3.09067 3.17175 3.46214 3.56668 4.02811 4.32883 4.51863 4.57125 4.64306 4.68150 4.90877 5.00953 5.14511 5.24875 5.30264 5.39962 5.49945 5.50033 5.53990 5.61745 5.75070 5.76299 5.85055 5.89712 5.94564 6.09717 6.11495 6.17382 6.19270 6.28753 6.41628 6.49802 6.55103 7.12702 7.19567 7.83078 7.96921 8.03600 8.31143 8.46649 8.57720 9.12370 10.66826 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.027746 B = 0.003952 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.909110 B = 7084.005959 C = 7626.196208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.116 4.116 5 C -0.133 4.133 6 C 0.046 3.954 7 N -0.585 5.585 8 C 0.512 3.488 9 O -0.516 6.516 10 C 0.530 3.470 11 O -0.533 6.533 12 N -0.600 5.600 13 C 0.064 3.936 14 C 0.195 3.805 15 O -0.550 6.550 16 C -0.534 4.534 17 H 0.094 0.906 18 C 0.082 3.918 19 N -0.874 5.874 20 Si 0.855 3.145 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.254 1.254 24 C 0.122 3.878 25 C 0.112 3.888 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.080 0.920 37 H 0.354 0.646 38 H 0.272 0.728 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.069 0.931 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.568 -4.993 -13.886 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.093 0.907 4 C -0.154 4.154 5 C -0.171 4.171 6 C -0.075 4.075 7 N -0.319 5.319 8 C 0.295 3.705 9 O -0.391 6.391 10 C 0.315 3.685 11 O -0.415 6.415 12 N -0.331 5.331 13 C -0.058 4.058 14 C 0.153 3.847 15 O -0.362 6.362 16 C -0.572 4.572 17 H 0.112 0.888 18 C -0.124 4.124 19 N -0.509 5.509 20 Si 0.683 3.317 21 H -0.192 1.192 22 H -0.208 1.208 23 H -0.179 1.179 24 C 0.001 3.999 25 C -0.010 4.010 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.178 0.822 34 H 0.080 0.920 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.207 0.793 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.121 0.879 41 H 0.087 0.913 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.527 -5.242 -14.350 20.405 hybrid contribution -1.055 -0.258 1.035 1.500 sum -14.581 -5.500 -13.315 20.498 Atomic orbital electron populations 1.21759 0.94319 1.02026 1.02087 1.21503 0.95922 1.00221 0.94961 0.90731 1.21630 0.95871 1.00606 0.97272 1.21838 0.95420 1.01558 0.98298 1.23254 1.05808 0.96085 0.82315 1.47928 1.06288 1.59492 1.18236 1.20151 0.88011 0.78875 0.83471 1.90737 1.75008 1.44032 1.29335 1.19482 0.87023 0.80567 0.81448 1.90206 1.74283 1.46056 1.30967 1.49569 1.10203 1.49965 1.23383 1.24724 1.02480 0.96929 0.81701 1.20297 0.91344 0.82977 0.90036 1.86449 1.94029 1.31274 1.24401 1.21091 1.22636 1.19530 0.93937 0.88766 1.24983 0.95186 0.94741 0.97448 1.69843 1.38779 1.32261 1.09984 0.87367 0.82733 0.80694 0.80868 1.19186 1.20835 1.17876 1.23363 0.79730 1.02137 0.94695 1.21752 0.79135 1.00969 0.99152 0.92326 0.92294 0.92484 0.91835 0.91829 0.90649 0.91740 0.82218 0.91993 0.88328 0.90198 0.79343 0.91766 0.90317 0.87933 0.91316 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.11 -1.02 2.87 -90.50 -0.26 -1.28 16 3 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 4 C -0.12 -1.00 5.17 -26.69 -0.14 -1.14 16 5 C -0.13 -1.33 6.06 -26.83 -0.16 -1.50 16 6 C 0.05 0.58 6.20 -3.94 -0.02 0.56 16 7 N -0.59 -8.48 2.98 -173.55 -0.52 -9.00 16 8 C 0.51 9.26 7.76 -11.58 -0.09 9.17 16 9 O -0.52 -10.42 14.59 5.50 0.08 -10.34 16 10 C 0.53 10.28 8.05 -11.59 -0.09 10.19 16 11 O -0.53 -10.29 13.80 5.50 0.08 -10.22 16 12 N -0.60 -12.27 3.69 -185.58 -0.68 -12.95 16 13 C 0.06 1.37 6.56 -8.38 -0.05 1.31 16 14 C 0.19 4.45 1.10 -91.12 -0.10 4.35 16 15 O -0.55 -13.09 13.33 -35.23 -0.47 -13.56 16 16 C -0.53 -13.65 9.27 -34.44 -0.32 -13.97 16 17 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 18 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 19 N -0.87 -24.30 13.96 55.43 0.77 -23.53 16 20 Si 0.86 19.26 24.42 -169.99 -4.15 15.11 16 21 H -0.27 -5.78 7.06 56.52 0.40 -5.38 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.25 -5.58 5.50 56.52 0.31 -5.27 16 24 C 0.12 2.46 8.02 -8.52 -0.07 2.39 16 25 C 0.11 1.33 5.71 -3.71 -0.02 1.31 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.16 2.40 3.79 -56.98 -0.22 2.19 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.10 1.99 8.10 -51.93 -0.42 1.57 16 36 H 0.08 1.78 6.29 -51.93 -0.33 1.45 16 37 H 0.35 8.12 3.16 45.56 0.14 8.26 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 40 H 0.10 1.86 8.10 -51.93 -0.42 1.44 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -29.17 330.26 -6.91 -36.08 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.90 Total: 10.72 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: -1.09 Total: 12.72 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: -0.43 Total: -45.48 kcal Atomic # 8 Polarization: -33.81 SS G_CDS: -0.31 Total: -34.12 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.15 Total: 15.11 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.17 -6.91 -36.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408157685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.767 kcal (2) G-P(sol) polarization free energy of solvation -29.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds