Wall clock time and date at job start Fri Apr 10 2020 17:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.49431 * 301.40868 * 8 7 6 10 10 C 1.50706 * 109.52094 * 181.33113 * 8 7 6 11 11 O 1.21277 * 120.00041 * 0.14265 * 10 8 7 12 12 N 1.34771 * 119.99515 * 180.14728 * 10 8 7 13 13 C 1.47065 * 136.06290 * 359.62627 * 12 10 8 14 14 C 1.53753 * 87.89261 * 152.96592 * 13 12 10 15 15 O 1.42899 * 114.39460 * 272.68227 * 14 13 12 16 16 C 1.50697 * 114.09082 * 139.77780 * 14 13 12 17 17 H 1.07998 * 120.00366 * 266.56539 * 16 14 13 18 18 C 1.37879 * 119.99741 * 86.55872 * 16 14 13 19 19 N 1.31513 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99824 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47455 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46756 * 120.00528 * 20 18 16 23 23 H 1.48502 * 109.47263 * 240.00445 * 20 18 16 24 24 C 1.47073 * 136.05362 * 180.02562 * 12 10 8 25 25 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 26 26 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 28 28 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 29 29 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 30 30 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 31 31 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 32 32 H 1.08996 * 109.45752 * 174.74562 * 6 5 4 33 33 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 34 34 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 35 35 H 1.09005 * 113.46737 * 267.70165 * 13 12 10 36 36 H 1.08997 * 113.46617 * 38.13586 * 13 12 10 37 37 H 0.96706 * 113.99400 * 273.58160 * 15 14 13 38 38 H 0.96996 * 120.00536 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.46719 * 321.85479 * 24 12 10 40 40 H 1.08995 * 113.47064 * 92.30127 * 24 12 10 41 41 H 1.08994 * 109.58707 * 353.37218 * 25 4 2 42 42 H 1.09001 * 109.58947 * 113.66077 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8592 -1.5865 -2.0955 10 6 5.6382 -2.1884 -1.0813 11 8 6.1429 -3.2853 -0.9682 12 7 6.4180 -1.0911 -1.1450 13 6 6.1997 0.3567 -1.2837 14 6 7.5297 0.5708 -0.5427 15 8 7.4131 0.6057 0.8811 16 6 8.3727 1.6877 -1.1021 17 1 9.1320 1.4738 -1.8397 18 6 8.1744 2.9827 -0.6724 19 7 7.2500 3.2431 0.2261 20 14 9.2198 4.3671 -1.3653 21 1 10.1812 3.8147 -2.3531 22 1 8.3431 5.3632 -2.0320 23 1 9.9657 5.0240 -0.2620 24 6 7.8623 -0.8150 -1.1135 25 6 3.6500 -1.1833 0.0119 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.6419 -2.9648 0.9536 30 1 0.3922 -2.2664 -0.1082 31 1 1.7144 -2.8248 -2.1020 32 1 1.5170 -4.2911 -1.1120 33 1 3.8598 -4.0653 -1.8659 34 1 3.7546 -3.8923 -0.0978 35 1 6.2184 0.7014 -2.3176 36 1 5.3314 0.7193 -0.7336 37 1 7.2036 1.4801 1.2372 38 1 7.1102 4.1542 0.5282 39 1 8.4106 -1.4507 -0.4182 40 1 8.3190 -0.7789 -2.1024 41 1 4.0271 -0.1677 -0.1075 42 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408298705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:04 Heat of formation + Delta-G solvation = -83.323619 kcal Electronic energy + Delta-G solvation = -25239.191544 eV Core-core repulsion = 21606.540437 eV Total energy + Delta-G solvation = -3632.651106 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.43147 -39.39377 -37.84276 -36.67312 -33.99344 -33.02551 -32.14930 -31.69163 -29.72102 -28.46063 -25.65434 -25.22742 -24.82407 -23.61954 -21.41276 -19.91509 -19.03790 -18.21898 -17.45283 -16.98030 -16.28524 -16.02830 -15.59643 -15.28459 -14.91722 -14.75484 -14.31420 -14.04660 -13.97624 -13.29117 -13.26265 -13.11741 -12.92220 -12.63388 -12.59416 -12.19063 -12.00353 -11.97795 -11.52683 -11.43668 -11.21556 -11.05036 -10.98100 -10.91957 -10.54396 -10.39240 -10.15726 -9.83264 -9.56239 -9.16194 -8.74197 -8.66068 -8.34384 -7.83427 -6.35134 -4.46012 2.65092 2.88152 3.17067 3.21737 3.26229 3.29728 3.56219 4.21954 4.47641 4.59214 4.77175 4.81970 4.86620 5.01164 5.05605 5.09476 5.21252 5.22265 5.36009 5.48580 5.60154 5.64339 5.70234 5.74433 5.85571 5.92996 6.01222 6.12928 6.18723 6.30224 6.40940 6.46506 6.55653 6.67082 6.80661 7.14267 7.39834 7.67405 7.84165 8.20817 8.50084 8.57644 8.73834 9.25233 9.52527 10.71486 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.004929 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.761516 B = 5679.432270 C = 6917.939601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.506 3.494 3 O -0.533 6.533 4 N -0.614 5.614 5 C 0.105 3.895 6 C -0.134 4.134 7 C -0.099 4.099 8 C -0.112 4.112 9 H 0.094 0.906 10 C 0.541 3.459 11 O -0.563 6.563 12 N -0.632 5.632 13 C 0.066 3.934 14 C 0.242 3.758 15 O -0.571 6.571 16 C -0.536 4.536 17 H 0.073 0.927 18 C 0.072 3.928 19 N -0.894 5.894 20 Si 0.908 3.092 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.280 1.280 24 C 0.106 3.894 25 C 0.117 3.883 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.156 -8.416 -1.854 16.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.294 3.706 3 O -0.409 6.409 4 N -0.349 5.349 5 C -0.018 4.018 6 C -0.173 4.173 7 C -0.137 4.137 8 C -0.134 4.134 9 H 0.112 0.888 10 C 0.329 3.671 11 O -0.443 6.443 12 N -0.364 5.364 13 C -0.057 4.057 14 C 0.200 3.800 15 O -0.384 6.384 16 C -0.574 4.574 17 H 0.091 0.909 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.207 1.207 23 H -0.206 1.206 24 C -0.016 4.016 25 C -0.006 4.006 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.089 0.911 37 H 0.251 0.749 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.661 -9.056 -1.719 16.480 hybrid contribution 0.216 1.271 -0.424 1.357 sum -13.445 -7.784 -2.143 15.683 Atomic orbital electron populations 1.21930 0.91979 1.05352 1.03816 1.20846 0.90572 0.83160 0.75983 1.90805 1.70520 1.30779 1.48795 1.48170 1.06815 1.06026 1.73870 1.21890 0.96553 0.84235 0.99146 1.22025 0.96429 1.00152 0.98650 1.21326 0.93515 0.95067 1.03762 1.21572 0.92524 0.98353 1.00992 0.88813 1.19774 0.87835 0.82745 0.76742 1.90628 1.75682 1.25604 1.52397 1.49787 1.09824 1.07471 1.69360 1.24426 1.03567 0.76175 1.01488 1.19554 0.89653 0.90414 0.80363 1.86031 1.93419 1.39173 1.19798 1.21448 1.20000 0.91292 1.24650 0.90918 1.25085 0.94577 0.99097 0.94286 1.69267 1.32053 1.21671 1.30418 0.86277 0.80048 0.81173 0.79007 1.19443 1.20653 1.20619 1.23343 0.81219 0.96836 1.00219 1.21651 0.78927 1.02778 0.97240 0.89034 0.89562 0.89556 0.91088 0.89541 0.91392 0.90312 0.90837 0.90942 0.90145 0.91071 0.74882 0.91552 0.91550 0.89730 0.87263 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.48 8.67 36.01 0.31 -1.16 16 2 C 0.51 7.18 7.81 -10.98 -0.09 7.09 16 3 O -0.53 -10.47 16.50 5.55 0.09 -10.38 16 4 N -0.61 -8.05 2.97 -172.53 -0.51 -8.56 16 5 C 0.10 0.92 6.37 -3.48 -0.02 0.90 16 6 C -0.13 -1.20 6.10 -26.39 -0.16 -1.36 16 7 C -0.10 -1.26 4.46 -26.69 -0.12 -1.38 16 8 C -0.11 -1.77 2.55 -91.66 -0.23 -2.01 16 9 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 10 C 0.54 10.89 7.41 -10.98 -0.08 10.81 16 11 O -0.56 -12.69 16.76 5.56 0.09 -12.60 16 12 N -0.63 -13.52 3.63 -185.02 -0.67 -14.19 16 13 C 0.07 1.47 7.50 -8.37 -0.06 1.41 16 14 C 0.24 5.92 1.59 -91.11 -0.14 5.78 16 15 O -0.57 -15.03 13.55 -35.23 -0.48 -15.50 16 16 C -0.54 -13.65 8.69 -34.44 -0.30 -13.95 16 17 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 18 C 0.07 1.84 5.40 -17.82 -0.10 1.75 16 19 N -0.89 -23.44 11.01 55.43 0.61 -22.82 16 20 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 C 0.11 2.35 8.03 -8.49 -0.07 2.29 16 25 C 0.12 1.90 5.52 -3.73 -0.02 1.88 16 26 H 0.09 0.81 8.12 -51.93 -0.42 0.39 16 27 H 0.09 0.55 7.70 -51.93 -0.40 0.15 16 28 H 0.09 0.55 7.93 -51.93 -0.41 0.14 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.51 5.94 -51.93 -0.31 0.21 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.07 0.98 8.13 -51.93 -0.42 0.55 16 35 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 36 H 0.07 1.65 5.74 -51.93 -0.30 1.35 16 37 H 0.39 10.60 6.33 45.56 0.29 10.89 16 38 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 41 H 0.11 2.15 4.25 -51.93 -0.22 1.93 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -31.60 338.73 -7.40 -39.00 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -5.54 Total: 13.09 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.08 Total: 12.04 kcal Atomic # 7 Polarization: -45.00 SS G_CDS: -0.57 Total: -45.58 kcal Atomic # 8 Polarization: -38.18 SS G_CDS: -0.29 Total: -38.47 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.60 -7.40 -39.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408298705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.321 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds