Wall clock time and date at job start Fri Apr 10 2020 17:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21283 * 120.00262 * 2 1 4 4 N 1.34777 * 119.99928 * 179.71906 * 2 1 3 5 5 C 1.46931 * 120.63086 * 0.02562 * 4 2 1 6 6 C 1.53622 * 108.54424 * 126.36867 * 5 4 2 7 7 C 1.53036 * 109.24613 * 54.85288 * 6 5 4 8 8 C 1.53046 * 109.53689 * 298.51382 * 7 6 5 9 9 H 1.08997 * 109.49431 * 301.40868 * 8 7 6 10 10 C 1.50706 * 109.52094 * 181.33113 * 8 7 6 11 11 O 1.21277 * 120.00041 * 0.14265 * 10 8 7 12 12 N 1.34771 * 119.99515 * 180.14728 * 10 8 7 13 13 C 1.47065 * 136.06290 * 359.62627 * 12 10 8 14 14 C 1.53753 * 87.89261 * 152.96592 * 13 12 10 15 15 O 1.42899 * 114.39460 * 272.68227 * 14 13 12 16 16 C 1.50697 * 114.09082 * 139.77780 * 14 13 12 17 17 H 1.07998 * 120.00366 * 266.56539 * 16 14 13 18 18 C 1.37879 * 119.99741 * 86.55872 * 16 14 13 19 19 N 1.31513 * 120.00217 * 0.02562 * 18 16 14 20 20 Si 1.86800 * 119.99824 * 179.97438 * 18 16 14 21 21 H 1.48497 * 109.47455 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46756 * 120.00528 * 20 18 16 23 23 H 1.48502 * 109.47263 * 240.00445 * 20 18 16 24 24 C 1.47073 * 136.05362 * 180.02562 * 12 10 8 25 25 C 1.46925 * 120.62933 * 180.27723 * 4 2 1 26 26 H 1.09001 * 109.47107 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46965 * 120.00305 * 1 2 3 28 28 H 1.08994 * 109.46990 * 240.00159 * 1 2 3 29 29 H 1.09000 * 109.58052 * 246.19939 * 5 4 2 30 30 H 1.08995 * 109.58699 * 6.62138 * 5 4 2 31 31 H 1.09003 * 109.63253 * 294.86246 * 6 5 4 32 32 H 1.08996 * 109.45752 * 174.74562 * 6 5 4 33 33 H 1.08995 * 109.46232 * 178.49380 * 7 6 5 34 34 H 1.09000 * 109.46110 * 58.53189 * 7 6 5 35 35 H 1.09005 * 113.46737 * 267.70165 * 13 12 10 36 36 H 1.08997 * 113.46617 * 38.13586 * 13 12 10 37 37 H 0.96706 * 113.99400 * 273.58160 * 15 14 13 38 38 H 0.96996 * 120.00536 * 180.02562 * 19 18 16 39 39 H 1.09000 * 113.46719 * 321.85479 * 24 12 10 40 40 H 1.08995 * 113.47064 * 92.30127 * 24 12 10 41 41 H 1.08994 * 109.58707 * 353.37218 * 25 4 2 42 42 H 1.09001 * 109.58947 * 113.66077 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4603 -2.4476 0.0114 6 6 1.9738 -3.3025 -1.1571 7 6 3.4946 -3.4372 -1.0535 8 6 4.1389 -2.0523 -1.1506 9 1 3.8592 -1.5865 -2.0955 10 6 5.6382 -2.1884 -1.0813 11 8 6.1429 -3.2853 -0.9682 12 7 6.4180 -1.0911 -1.1450 13 6 6.1997 0.3567 -1.2837 14 6 7.5297 0.5708 -0.5427 15 8 7.4131 0.6057 0.8811 16 6 8.3727 1.6877 -1.1021 17 1 9.1320 1.4738 -1.8397 18 6 8.1744 2.9827 -0.6724 19 7 7.2500 3.2431 0.2261 20 14 9.2198 4.3671 -1.3653 21 1 10.1812 3.8147 -2.3531 22 1 8.3431 5.3632 -2.0320 23 1 9.9657 5.0240 -0.2620 24 6 7.8623 -0.8150 -1.1135 25 6 3.6500 -1.1833 0.0119 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5139 -0.8900 28 1 -0.3633 -0.5138 0.8900 29 1 1.6419 -2.9648 0.9536 30 1 0.3922 -2.2664 -0.1082 31 1 1.7144 -2.8248 -2.1020 32 1 1.5170 -4.2911 -1.1120 33 1 3.8598 -4.0653 -1.8659 34 1 3.7546 -3.8923 -0.0978 35 1 6.2184 0.7014 -2.3176 36 1 5.3314 0.7193 -0.7336 37 1 7.2036 1.4801 1.2372 38 1 7.1102 4.1542 0.5282 39 1 8.4106 -1.4507 -0.4182 40 1 8.3190 -0.7789 -2.1024 41 1 4.0271 -0.1677 -0.1075 42 1 4.0070 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408298705.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:03 Heat of formation + Delta-G solvation = -107.140854 kcal Electronic energy + Delta-G solvation = -25240.224336 eV Core-core repulsion = 21606.540437 eV Total energy + Delta-G solvation = -3633.683899 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.80633 -40.85580 -39.44391 -37.99340 -35.94783 -34.19631 -34.15556 -32.73787 -30.78642 -30.01201 -27.37119 -26.94942 -26.06763 -24.82802 -22.59482 -21.58409 -20.08504 -19.93095 -19.28516 -18.12882 -17.94720 -17.26855 -17.16487 -16.79314 -16.35468 -16.10107 -16.00708 -15.57468 -15.06809 -14.89745 -14.49430 -14.37200 -14.19086 -14.15610 -13.77342 -13.54955 -13.43453 -13.20196 -13.01297 -12.85069 -12.81216 -12.57232 -12.26251 -12.21822 -11.99633 -11.88059 -11.64254 -11.41798 -11.04466 -10.83526 -10.66345 -10.25595 -9.78195 -9.63395 -8.29593 -6.48039 1.42204 1.43955 1.47541 1.58890 1.62842 1.83206 2.06243 2.38496 2.91781 3.33863 3.49037 3.67408 3.73591 3.83793 3.98525 4.02629 4.09986 4.12313 4.37307 4.40429 4.48346 4.56378 4.58335 4.63896 4.68525 4.69517 4.74135 4.84781 4.89064 4.96719 5.00110 5.10349 5.17435 5.18864 5.35784 5.42926 5.69562 5.86585 6.41363 6.58689 6.79143 7.04260 7.15600 7.26335 7.42788 8.76576 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017261 B = 0.004929 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.761516 B = 5679.432270 C = 6917.939601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.495 3.505 3 O -0.603 6.603 4 N -0.610 5.610 5 C 0.098 3.902 6 C -0.125 4.125 7 C -0.096 4.096 8 C -0.101 4.101 9 H 0.100 0.900 10 C 0.534 3.466 11 O -0.587 6.587 12 N -0.635 5.635 13 C 0.083 3.917 14 C 0.220 3.780 15 O -0.585 6.585 16 C -0.553 4.553 17 H 0.078 0.922 18 C 0.029 3.971 19 N -0.919 5.919 20 Si 0.974 3.026 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.280 1.280 24 C 0.108 3.892 25 C 0.123 3.877 26 H 0.086 0.914 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.129 0.871 31 H 0.075 0.925 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.388 0.612 38 H 0.276 0.724 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.422 -9.536 -2.911 19.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.286 3.714 3 O -0.484 6.484 4 N -0.344 5.344 5 C -0.023 4.023 6 C -0.162 4.162 7 C -0.134 4.134 8 C -0.123 4.123 9 H 0.118 0.882 10 C 0.324 3.676 11 O -0.469 6.469 12 N -0.367 5.367 13 C -0.040 4.040 14 C 0.179 3.821 15 O -0.398 6.398 16 C -0.591 4.591 17 H 0.096 0.904 18 C -0.171 4.171 19 N -0.560 5.560 20 Si 0.798 3.202 21 H -0.186 1.186 22 H -0.204 1.204 23 H -0.206 1.206 24 C -0.015 4.015 25 C -0.001 4.001 26 H 0.105 0.895 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.099 0.901 30 H 0.147 0.853 31 H 0.093 0.907 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.088 0.912 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.959 -10.240 -2.783 19.165 hybrid contribution 0.938 1.546 -0.049 1.809 sum -15.021 -8.693 -2.832 17.584 Atomic orbital electron populations 1.21964 0.86878 1.06186 1.06793 1.22003 0.92901 0.82185 0.74268 1.90778 1.72276 1.33285 1.52024 1.48316 1.05255 1.07853 1.72934 1.22312 0.98332 0.81952 0.99720 1.22026 0.93027 1.02207 0.98977 1.21370 0.96468 0.92417 1.03145 1.21574 0.89240 1.00580 1.00881 0.88209 1.20634 0.89598 0.81854 0.75479 1.90604 1.76617 1.26304 1.53350 1.49834 1.09536 1.07525 1.69816 1.24143 1.01845 0.76677 1.01325 1.19852 0.91060 0.91656 0.79530 1.86011 1.93596 1.38801 1.21364 1.21708 1.20431 0.91927 1.25011 0.90397 1.25854 0.95529 1.01277 0.94485 1.69356 1.33182 1.22155 1.31295 0.85264 0.78466 0.78134 0.78312 1.18630 1.20426 1.20578 1.23330 0.81978 0.95344 1.00838 1.21261 0.81773 1.00347 0.96756 0.89517 0.86211 0.86446 0.90115 0.85285 0.90677 0.86809 0.91132 0.91875 0.89242 0.92528 0.75588 0.91435 0.92514 0.87687 0.91178 0.92376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 8.67 71.24 0.62 -1.56 16 2 C 0.49 13.60 7.81 87.66 0.68 14.29 16 3 O -0.60 -24.65 16.50 -3.04 -0.05 -24.70 16 4 N -0.61 -15.17 2.97 -818.14 -2.43 -17.60 16 5 C 0.10 1.33 6.37 86.51 0.55 1.88 16 6 C -0.12 -1.71 6.10 30.82 0.19 -1.53 16 7 C -0.10 -2.28 4.46 30.62 0.14 -2.14 16 8 C -0.10 -3.18 2.55 -11.47 -0.03 -3.21 16 9 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 10 C 0.53 21.90 7.41 87.66 0.65 22.54 16 11 O -0.59 -26.76 16.76 -3.02 -0.05 -26.81 16 12 N -0.63 -27.91 3.63 -858.16 -3.12 -31.03 16 13 C 0.08 3.83 7.50 83.27 0.62 4.46 16 14 C 0.22 11.13 1.59 -11.11 -0.02 11.11 16 15 O -0.58 -32.23 13.55 -148.98 -2.02 -34.25 16 16 C -0.55 -28.56 8.69 25.60 0.22 -28.34 16 17 H 0.08 3.85 7.81 -2.91 -0.02 3.82 16 18 C 0.03 1.48 5.40 84.66 0.46 1.94 16 19 N -0.92 -49.47 11.01 21.45 0.24 -49.23 16 20 Si 0.97 40.80 29.54 68.60 2.03 42.83 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 22 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 23 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 24 C 0.11 4.88 8.03 83.19 0.67 5.55 16 25 C 0.12 4.12 5.52 86.35 0.48 4.60 16 26 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 27 H 0.12 0.88 7.70 -2.38 -0.02 0.86 16 28 H 0.12 0.92 7.93 -2.39 -0.02 0.90 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.13 0.73 5.94 -2.39 -0.01 0.72 16 31 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 1.73 8.07 -2.39 -0.02 1.71 16 34 H 0.06 1.62 8.13 -2.39 -0.02 1.60 16 35 H 0.09 3.91 8.10 -2.38 -0.02 3.89 16 36 H 0.06 2.79 5.74 -2.39 -0.01 2.77 16 37 H 0.39 21.99 6.33 -74.05 -0.47 21.52 16 38 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 39 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.11 4.27 8.10 -2.39 -0.02 4.25 16 41 H 0.07 2.95 4.25 -2.39 -0.01 2.94 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -73.11 338.73 0.40 -72.71 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.57 Total: 38.50 kcal Atomic # 6 Polarization: 24.35 SS G_CDS: 5.23 Total: 29.58 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -5.31 Total: -97.86 kcal Atomic # 8 Polarization: -83.64 SS G_CDS: -2.12 Total: -85.76 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -73.11 0.40 -72.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408298705.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.428 kcal (2) G-P(sol) polarization free energy of solvation -73.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds