Wall clock time and date at job start Fri Apr 10 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34224 * 117.00221 * 2 1 4 4 O 1.20825 * 119.99915 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00064 * 179.97438 * 3 2 1 6 6 C 1.52998 * 115.55310 * 304.08700 * 5 3 2 7 7 N 1.46493 * 109.47425 * 294.75822 * 6 5 3 8 8 C 1.34774 * 120.00355 * 182.78628 * 7 6 5 9 9 O 1.21587 * 119.99593 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00289 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00292 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47325 * 182.83064 * 11 10 8 13 13 C 1.50698 * 115.55323 * 295.04351 * 12 11 10 14 14 H 1.08002 * 119.99762 * 97.09190 * 13 12 11 15 15 C 1.37878 * 120.00253 * 276.82162 * 13 12 11 16 16 N 1.31515 * 119.99304 * 356.63159 * 15 13 12 17 17 Si 1.86791 * 120.00133 * 176.62638 * 15 13 12 18 18 H 1.48501 * 109.47335 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46855 * 120.00119 * 17 15 13 20 20 H 1.48490 * 109.47644 * 240.00119 * 17 15 13 21 21 C 1.53008 * 117.51383 * 80.74510 * 12 11 10 22 22 C 1.53001 * 59.99855 * 107.48299 * 21 12 11 23 23 C 1.52999 * 117.49646 * 89.75944 * 5 3 2 24 24 C 1.53005 * 117.49592 * 158.41902 * 5 3 2 25 25 H 1.08998 * 109.47204 * 299.99628 * 1 2 3 26 26 H 1.09003 * 109.47128 * 59.99655 * 1 2 3 27 27 H 1.08998 * 109.47404 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46914 * 174.75584 * 6 5 3 29 29 H 1.09004 * 109.46658 * 54.75627 * 6 5 3 30 30 H 0.97005 * 119.99620 * 2.78281 * 7 6 5 31 31 H 0.97006 * 120.00270 * 359.97438 * 10 8 7 32 32 H 1.09006 * 109.46900 * 62.83200 * 11 10 8 33 33 H 1.08999 * 109.47048 * 302.83563 * 11 10 8 34 34 H 0.97003 * 119.99111 * 185.01408 * 16 15 13 35 35 H 1.08998 * 117.49286 * 214.96933 * 21 12 11 36 36 H 1.08994 * 117.49820 * 359.97438 * 21 12 11 37 37 H 1.09007 * 117.49631 * 252.50903 * 22 21 12 38 38 H 1.08999 * 117.52146 * 107.48318 * 22 21 12 39 39 H 1.09002 * 117.49909 * 214.99988 * 23 5 3 40 40 H 1.09005 * 117.50054 * 0.02562 * 23 5 3 41 41 H 1.09002 * 117.50020 * 359.97433 * 24 5 3 42 42 H 1.08997 * 117.49932 * 144.97861 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.2653 0.5370 1.1442 7 7 3.9200 1.1720 2.4184 8 6 4.4680 0.7237 3.5651 9 8 5.2487 -0.2082 3.5422 10 7 4.1507 1.3082 4.7373 11 6 4.7459 0.8205 5.9840 12 6 4.1693 1.6037 7.1650 13 6 4.5044 3.0726 7.1967 14 1 3.8008 3.7954 6.8106 15 6 5.7067 3.4943 7.7236 16 7 6.5323 2.6215 8.2586 17 14 6.1629 5.3050 7.6774 18 1 5.0712 6.0742 7.0279 19 1 6.3607 5.8011 9.0631 20 1 7.4191 5.4796 6.9051 21 6 2.7959 1.1808 7.6905 22 6 4.0540 0.8764 8.5062 23 6 4.2725 1.3057 -1.3563 24 6 4.2059 2.5719 -0.4986 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 5.3447 0.5794 0.9978 29 1 3.9410 -0.5036 1.1571 30 1 3.2969 1.9152 2.4366 31 1 3.5281 2.0519 4.7556 32 1 5.8266 0.9590 5.9491 33 1 4.5191 -0.2387 6.1048 34 1 7.3440 2.9256 8.6939 35 1 2.1348 1.9652 8.0591 36 1 2.3028 0.3449 7.1945 37 1 4.3888 -0.1602 8.5470 38 1 4.2210 1.4602 9.4114 39 1 5.2352 0.8005 -1.4343 40 1 3.6486 1.2695 -2.2494 41 1 3.5382 3.3681 -0.8279 42 1 5.1245 2.8999 -0.0121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430990152.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:17 Heat of formation + Delta-G solvation = -65.665164 kcal Electronic energy + Delta-G solvation = -23985.757554 eV Core-core repulsion = 20353.872176 eV Total energy + Delta-G solvation = -3631.885378 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.00101 -39.39749 -37.91517 -36.74194 -36.40736 -33.78373 -33.18226 -31.94902 -28.61104 -27.51267 -25.85023 -24.86550 -23.77669 -22.87260 -21.17135 -20.27905 -20.11617 -19.36443 -18.05971 -17.46560 -17.06771 -16.60021 -16.18502 -15.49855 -15.17037 -14.87870 -14.61495 -14.35416 -14.01661 -13.70544 -13.43740 -13.31936 -12.97951 -12.80167 -12.59219 -12.19480 -11.90787 -11.75848 -11.54682 -11.11115 -11.05615 -11.00063 -10.91839 -10.74199 -10.58457 -10.50778 -10.23098 -9.73483 -9.45209 -9.00782 -8.88263 -8.48140 -8.23020 -7.97092 -6.05999 -4.15291 1.83815 2.34435 2.96341 3.25821 3.34980 3.36987 3.48596 3.78470 4.17761 4.35325 4.36836 4.41526 4.53583 4.84202 4.88187 4.93279 5.21780 5.22959 5.23588 5.30337 5.39807 5.54143 5.61677 5.70030 5.76463 6.04882 6.10193 6.36149 6.49863 6.60797 6.68775 6.72065 6.86684 7.12543 7.32485 7.43294 7.44350 7.47657 7.61173 7.83239 8.35926 8.64436 8.86148 9.18798 9.51791 11.01587 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.016910 B = 0.003664 C = 0.003431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1655.472128 B = 7639.129333 C = 8158.927944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.349 6.349 3 C 0.501 3.499 4 O -0.502 6.502 5 C -0.158 4.158 6 C 0.186 3.814 7 N -0.756 5.756 8 C 0.700 3.300 9 O -0.603 6.603 10 N -0.720 5.720 11 C 0.182 3.818 12 C 0.025 3.975 13 C -0.498 4.498 14 H 0.060 0.940 15 C 0.073 3.927 16 N -0.874 5.874 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.211 4.211 22 C -0.144 4.144 23 C -0.137 4.137 24 C -0.137 4.137 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.394 0.606 31 H 0.396 0.604 32 H 0.067 0.933 33 H 0.037 0.963 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.181 -3.304 -17.940 19.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.265 6.265 3 C 0.343 3.657 4 O -0.389 6.389 5 C -0.160 4.160 6 C 0.061 3.939 7 N -0.413 5.413 8 C 0.400 3.600 9 O -0.482 6.482 10 N -0.372 5.372 11 C 0.059 3.941 12 C 0.024 3.976 13 C -0.535 4.535 14 H 0.078 0.922 15 C -0.131 4.131 16 N -0.510 5.510 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.248 4.248 22 C -0.182 4.182 23 C -0.175 4.175 24 C -0.173 4.173 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.121 0.879 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.227 0.773 31 H 0.230 0.770 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.461 -3.921 -17.875 19.763 hybrid contribution -0.548 1.703 0.187 1.799 sum -8.010 -2.218 -17.688 19.544 Atomic orbital electron populations 1.23316 0.76039 1.03926 1.02614 1.86516 1.23474 1.32906 1.83630 1.22411 0.89920 0.81440 0.71924 1.90682 1.66631 1.36437 1.45147 1.21239 0.87965 1.06711 1.00047 1.20482 0.98799 0.95693 0.78896 1.45079 1.51465 1.39262 1.05495 1.15972 0.81034 0.82609 0.80388 1.90874 1.39572 1.31477 1.86314 1.45161 1.49390 1.37245 1.05387 1.20851 0.97903 0.94527 0.80843 1.19061 0.92911 0.94966 0.90648 1.20384 1.01828 0.89380 1.41941 0.92225 1.24982 0.95972 0.97281 0.94861 1.70002 1.11947 1.33231 1.35863 0.86575 0.78523 0.85395 0.77722 1.19759 1.21051 1.20982 1.22992 0.92182 1.02014 1.07606 1.22468 0.99737 0.98704 0.97299 1.23146 1.02002 1.01065 0.91288 1.23226 1.02522 0.90606 1.00987 0.91623 0.91936 0.87892 0.90122 0.90443 0.77254 0.77002 0.91447 0.94518 0.92952 0.90454 0.91710 0.91749 0.89651 0.86613 0.87772 0.87207 0.86629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.35 -3.88 10.56 -39.24 -0.41 -4.29 16 3 C 0.50 5.92 7.06 36.00 0.25 6.17 16 4 O -0.50 -6.96 16.23 -18.75 -0.30 -7.26 16 5 C -0.16 -1.60 2.06 -155.66 -0.32 -1.92 16 6 C 0.19 2.30 5.50 -4.05 -0.02 2.28 16 7 N -0.76 -11.19 5.48 -65.23 -0.36 -11.54 16 8 C 0.70 13.58 8.57 -86.93 -0.74 12.83 16 9 O -0.60 -13.84 16.34 5.29 0.09 -13.76 16 10 N -0.72 -14.38 5.48 -65.22 -0.36 -14.74 16 11 C 0.18 4.21 5.50 -4.04 -0.02 4.19 16 12 C 0.02 0.59 1.42 -155.66 -0.22 0.37 16 13 C -0.50 -12.86 8.60 -34.44 -0.30 -13.16 16 14 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 15 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 16 N -0.87 -24.33 12.76 55.43 0.71 -23.62 16 17 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 C -0.21 -4.44 9.96 -26.73 -0.27 -4.70 16 22 C -0.14 -3.32 9.28 -26.73 -0.25 -3.57 16 23 C -0.14 -0.99 9.93 -26.69 -0.26 -1.26 16 24 C -0.14 -1.17 9.76 -26.69 -0.26 -1.44 16 25 H 0.07 0.56 8.13 -51.93 -0.42 0.14 16 26 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 27 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 29 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.39 5.30 8.37 -40.82 -0.34 4.95 16 31 H 0.40 7.31 8.36 -40.82 -0.34 6.97 16 32 H 0.07 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 34 H 0.26 6.96 8.32 -40.82 -0.34 6.62 16 35 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 38 H 0.08 2.09 8.14 -51.93 -0.42 1.67 16 39 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.97 7.84 -51.93 -0.41 0.57 16 42 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 365.93 15.07 5.51 5.51 Total: -1.00 -32.00 365.93 -8.14 -40.13 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.55 Total: 10.90 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -1.44 Total: 3.00 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -0.01 Total: -49.90 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.63 Total: -25.31 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.00 -8.14 -40.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430990152.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.531 kcal (2) G-P(sol) polarization free energy of solvation -31.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds