Wall clock time and date at job start Fri Apr 10 2020 17:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34953 * 125.52827 * 2 1 4 4 C 1.41203 * 108.24633 * 179.97438 * 3 2 1 5 5 N 1.32929 * 126.37920 * 180.02562 * 4 3 2 6 6 C 1.33835 * 120.00203 * 359.97431 * 5 4 3 7 7 O 1.21838 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00070 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47129 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47184 * 179.97438 * 12 11 10 14 14 N 1.37421 * 107.24299 * 359.72945 * 4 3 2 15 15 H 0.96999 * 126.37059 * 180.25110 * 14 4 3 16 16 N 1.36451 * 125.52366 * 179.97438 * 2 1 3 17 17 C 1.46500 * 125.85343 * 0.03053 * 16 2 1 18 18 C 1.50706 * 109.46949 * 84.99522 * 17 16 2 19 19 H 1.07995 * 120.00167 * 359.72205 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47474 * 90.00322 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99887 * 22 20 18 26 26 H 1.08995 * 109.47688 * 270.02995 * 1 2 3 27 27 H 1.09005 * 109.46676 * 30.02468 * 1 2 3 28 28 H 1.09000 * 109.47361 * 150.02310 * 1 2 3 29 29 H 1.08002 * 125.87631 * 0.02562 * 3 2 1 30 30 H 0.97003 * 119.99912 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47001 * 300.00507 * 9 8 6 32 32 H 1.09002 * 109.46989 * 59.99672 * 9 8 6 33 33 H 1.08997 * 109.46928 * 300.00162 * 10 9 8 34 34 H 1.08994 * 109.46629 * 59.99873 * 10 9 8 35 35 H 1.09009 * 109.47038 * 300.00124 * 11 10 9 36 36 H 1.09002 * 109.47218 * 59.99806 * 11 10 9 37 37 H 1.08997 * 109.46928 * 299.99977 * 12 11 10 38 38 H 1.09002 * 109.47229 * 59.99813 * 12 11 10 39 39 H 0.96698 * 114.00391 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47175 * 324.99547 * 17 16 2 41 41 H 1.09001 * 109.47297 * 204.99055 * 17 16 2 42 42 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6788 0.0006 5 7 4.7103 1.4665 0.0013 6 6 4.5626 2.7967 0.0009 7 8 3.4466 3.2856 0.0004 8 7 5.6483 3.5953 0.0010 9 6 5.4865 5.0514 0.0001 10 6 6.8639 5.7175 0.0011 11 6 6.6950 7.2381 0.0007 12 6 8.0723 7.9043 0.0024 13 8 7.9146 9.3245 0.0015 14 7 3.6386 -0.6954 0.0072 15 1 4.4192 -1.2711 0.0125 16 7 2.2998 -1.1105 0.0005 17 6 1.8320 -2.4988 0.0005 18 6 1.5547 -2.9355 -1.4150 19 1 1.7071 -2.2462 -2.2324 20 6 1.1016 -4.2133 -1.6660 21 7 0.9109 -5.0508 -0.6702 22 14 0.7587 -4.7547 -3.4206 23 1 1.9897 -5.3432 -4.0067 24 1 -0.3248 -5.7703 -3.4223 25 1 0.3383 -3.5811 -4.2276 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9468 2.1219 0.0004 30 1 6.5367 3.2060 0.0018 31 1 4.9362 5.3552 -0.8904 32 1 4.9352 5.3563 0.8895 33 1 7.4138 5.4136 0.8918 34 1 7.4155 5.4126 -0.8881 35 1 6.1448 7.5424 -0.8898 36 1 6.1434 7.5427 0.8902 37 1 8.6220 7.6000 0.8931 38 1 8.6243 7.5998 -0.8868 39 1 8.7491 9.8130 0.0029 40 1 0.9180 -2.5743 0.5896 41 1 2.5985 -3.1406 0.4351 42 1 0.5918 -5.9496 -0.8468 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488581395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:30 Heat of formation + Delta-G solvation = 0.864825 kcal Electronic energy + Delta-G solvation = -22808.822350 eV Core-core repulsion = 19212.114679 eV Total energy + Delta-G solvation = -3596.707670 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.81358 -38.85929 -37.54456 -35.61989 -34.24840 -33.08495 -32.71014 -32.15310 -30.58762 -28.05134 -27.44824 -26.52413 -23.65350 -22.86191 -21.54355 -21.31416 -19.73297 -19.44140 -17.69946 -17.26578 -16.89587 -16.26667 -16.15139 -15.62092 -15.07274 -14.86527 -14.64891 -14.52860 -14.02196 -13.71074 -13.68697 -12.90807 -12.72612 -12.67823 -12.52106 -12.14723 -12.08213 -11.99464 -11.94796 -11.76716 -11.30982 -11.15202 -11.05143 -11.01818 -10.50820 -10.32358 -10.30256 -9.64208 -9.41320 -8.90687 -8.80412 -8.53441 -8.30226 -6.83910 -6.45845 -4.63440 1.82129 2.11604 3.06316 3.14304 3.16692 3.19843 3.54253 4.00995 4.08395 4.51070 4.62958 4.71520 4.73340 4.83051 5.00249 5.08694 5.09702 5.20177 5.34404 5.54769 5.62772 5.68426 5.78966 5.85680 5.90838 6.01988 6.07512 6.17598 6.21507 6.45179 6.56834 6.63349 6.79881 7.13589 7.26613 7.40765 7.45233 7.54229 7.71503 7.92679 8.35222 8.47086 8.52697 9.06903 9.68262 10.54325 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.002233 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.362482 B =12537.510901 C =12745.428611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.189 3.811 3 C -0.335 4.335 4 C 0.488 3.512 5 N -0.715 5.715 6 C 0.684 3.316 7 O -0.633 6.633 8 N -0.733 5.733 9 C 0.141 3.859 10 C -0.127 4.127 11 C -0.118 4.118 12 C 0.076 3.924 13 O -0.577 6.577 14 N -0.472 5.472 15 H 0.444 0.556 16 N -0.345 5.345 17 C 0.255 3.745 18 C -0.555 4.555 19 H 0.069 0.931 20 C 0.070 3.930 21 N -0.887 5.887 22 Si 0.908 3.092 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.270 1.270 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.182 0.818 30 H 0.396 0.604 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.379 0.621 40 H 0.067 0.933 41 H 0.050 0.950 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.750 14.948 2.479 17.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.063 3.937 3 C -0.367 4.367 4 C 0.235 3.765 5 N -0.480 5.480 6 C 0.383 3.617 7 O -0.515 6.515 8 N -0.388 5.388 9 C 0.016 3.984 10 C -0.165 4.165 11 C -0.156 4.156 12 C -0.002 4.002 13 O -0.382 6.382 14 N -0.195 5.195 15 H 0.291 0.709 16 N -0.132 5.132 17 C 0.139 3.861 18 C -0.593 4.593 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.523 5.523 22 Si 0.735 3.265 23 H -0.202 1.202 24 H -0.207 1.207 25 H -0.194 1.194 26 H 0.101 0.899 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.199 0.801 30 H 0.229 0.771 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.063 14.320 2.537 16.628 hybrid contribution 0.821 -0.608 -0.938 1.387 sum 8.884 13.712 1.599 16.416 Atomic orbital electron populations 1.20636 0.86563 1.04948 1.03531 1.21274 0.94409 0.85576 0.92475 1.22187 0.91154 1.00241 1.23133 1.18674 0.91079 0.82007 0.84694 1.68030 1.28727 1.03926 1.47336 1.16619 0.83010 0.84934 0.77168 1.90726 1.24395 1.78702 1.57666 1.44680 1.08399 1.04930 1.80763 1.20995 0.95809 0.79694 1.01905 1.21679 0.97675 0.94323 1.02867 1.21413 0.96524 0.93809 1.03840 1.22203 0.97632 0.80630 0.99747 1.86482 1.35602 1.18373 1.97742 1.44383 0.98872 1.04914 1.71313 0.70940 1.47835 0.92562 1.08018 1.64811 1.19992 0.96390 0.70347 0.99397 1.21403 1.47518 0.98630 0.91772 0.91276 1.24948 0.94316 0.95834 0.98388 1.69899 1.44127 1.06909 1.31393 0.86315 0.78320 0.78713 0.83191 1.20241 1.20698 1.19427 0.89933 0.89420 0.89087 0.80078 0.77102 0.92189 0.92206 0.91186 0.91167 0.90828 0.90845 0.93606 0.93605 0.77469 0.91557 0.93204 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 9.92 36.01 0.36 -1.08 16 2 C 0.19 3.47 6.92 -81.70 -0.57 2.91 16 3 C -0.33 -6.71 9.41 -39.62 -0.37 -7.09 16 4 C 0.49 10.00 8.07 -155.29 -1.25 8.75 16 5 N -0.72 -14.73 10.59 -15.79 -0.17 -14.89 16 6 C 0.68 13.95 8.47 -87.76 -0.74 13.21 16 7 O -0.63 -14.37 13.26 5.06 0.07 -14.30 16 8 N -0.73 -11.50 5.56 -65.42 -0.36 -11.86 16 9 C 0.14 1.82 5.67 -4.04 -0.02 1.80 16 10 C -0.13 -1.13 5.33 -26.73 -0.14 -1.27 16 11 C -0.12 -1.02 5.58 -26.73 -0.15 -1.17 16 12 C 0.08 0.56 7.05 37.16 0.26 0.82 16 13 O -0.58 -4.80 13.66 -35.23 -0.48 -5.28 16 14 N -0.47 -8.87 7.38 31.33 0.23 -8.64 16 15 H 0.44 7.29 8.96 -182.55 -1.64 5.65 16 16 N -0.35 -6.75 3.63 -58.04 -0.21 -6.96 16 17 C 0.26 5.44 5.71 -5.19 -0.03 5.41 16 18 C -0.56 -13.28 9.39 -34.44 -0.32 -13.60 16 19 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 20 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -22.50 13.29 55.43 0.74 -21.76 16 22 Si 0.91 19.31 29.54 -169.99 -5.02 14.29 16 23 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 26 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.09 1.41 7.80 -51.93 -0.40 1.01 16 29 H 0.18 3.82 5.77 -52.49 -0.30 3.52 16 30 H 0.40 5.36 8.57 -40.82 -0.35 5.01 16 31 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 38 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.38 1.35 9.12 45.56 0.42 1.77 16 40 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 41 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 LS Contribution 359.01 15.07 5.41 5.41 Total: -1.00 -31.49 359.01 -9.76 -41.25 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -6.88 Total: 12.43 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -3.08 Total: 10.30 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: 0.23 Total: -64.11 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.41 Total: -19.58 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.49 -9.76 -41.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488581395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.119 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds