Wall clock time and date at job start Fri Apr 10 2020 17:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34953 * 125.52827 * 2 1 4 4 C 1.41203 * 108.24633 * 179.97438 * 3 2 1 5 5 N 1.32929 * 126.37920 * 180.02562 * 4 3 2 6 6 C 1.33835 * 120.00203 * 359.97431 * 5 4 3 7 7 O 1.21838 * 119.99871 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00070 * 179.97438 * 8 6 5 10 10 C 1.52999 * 109.47285 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47129 * 180.02562 * 10 9 8 12 12 C 1.52999 * 109.47129 * 179.97438 * 11 10 9 13 13 O 1.42895 * 109.47184 * 179.97438 * 12 11 10 14 14 N 1.37421 * 107.24299 * 359.72945 * 4 3 2 15 15 H 0.96999 * 126.37059 * 180.25110 * 14 4 3 16 16 N 1.36451 * 125.52366 * 179.97438 * 2 1 3 17 17 C 1.46500 * 125.85343 * 0.03053 * 16 2 1 18 18 C 1.50706 * 109.46949 * 84.99522 * 17 16 2 19 19 H 1.07995 * 120.00167 * 359.72205 * 18 17 16 20 20 C 1.37879 * 119.99394 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00338 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99424 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47474 * 90.00322 * 22 20 18 24 24 H 1.48507 * 109.46754 * 210.00056 * 22 20 18 25 25 H 1.48498 * 109.47278 * 329.99887 * 22 20 18 26 26 H 1.08995 * 109.47688 * 270.02995 * 1 2 3 27 27 H 1.09005 * 109.46676 * 30.02468 * 1 2 3 28 28 H 1.09000 * 109.47361 * 150.02310 * 1 2 3 29 29 H 1.08002 * 125.87631 * 0.02562 * 3 2 1 30 30 H 0.97003 * 119.99912 * 359.97438 * 8 6 5 31 31 H 1.08997 * 109.47001 * 300.00507 * 9 8 6 32 32 H 1.09002 * 109.46989 * 59.99672 * 9 8 6 33 33 H 1.08997 * 109.46928 * 300.00162 * 10 9 8 34 34 H 1.08994 * 109.46629 * 59.99873 * 10 9 8 35 35 H 1.09009 * 109.47038 * 300.00124 * 11 10 9 36 36 H 1.09002 * 109.47218 * 59.99806 * 11 10 9 37 37 H 1.08997 * 109.46928 * 299.99977 * 12 11 10 38 38 H 1.09002 * 109.47229 * 59.99813 * 12 11 10 39 39 H 0.96698 * 114.00391 * 179.97438 * 13 12 11 40 40 H 1.09000 * 109.47175 * 324.99547 * 17 16 2 41 41 H 1.09001 * 109.47297 * 204.99055 * 17 16 2 42 42 H 0.96996 * 119.99730 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2912 1.0983 0.0000 4 6 3.6395 0.6788 0.0006 5 7 4.7103 1.4665 0.0013 6 6 4.5626 2.7967 0.0009 7 8 3.4466 3.2856 0.0004 8 7 5.6483 3.5953 0.0010 9 6 5.4865 5.0514 0.0001 10 6 6.8639 5.7175 0.0011 11 6 6.6950 7.2381 0.0007 12 6 8.0723 7.9043 0.0024 13 8 7.9146 9.3245 0.0015 14 7 3.6386 -0.6954 0.0072 15 1 4.4192 -1.2711 0.0125 16 7 2.2998 -1.1105 0.0005 17 6 1.8320 -2.4988 0.0005 18 6 1.5547 -2.9355 -1.4150 19 1 1.7071 -2.2462 -2.2324 20 6 1.1016 -4.2133 -1.6660 21 7 0.9109 -5.0508 -0.6702 22 14 0.7587 -4.7547 -3.4206 23 1 1.9897 -5.3432 -4.0067 24 1 -0.3248 -5.7703 -3.4223 25 1 0.3383 -3.5811 -4.2276 26 1 -0.3634 0.0005 1.0276 27 1 -0.3633 0.8898 -0.5143 28 1 -0.3634 -0.8902 -0.5135 29 1 1.9468 2.1219 0.0004 30 1 6.5367 3.2060 0.0018 31 1 4.9362 5.3552 -0.8904 32 1 4.9352 5.3563 0.8895 33 1 7.4138 5.4136 0.8918 34 1 7.4155 5.4126 -0.8881 35 1 6.1448 7.5424 -0.8898 36 1 6.1434 7.5427 0.8902 37 1 8.6220 7.6000 0.8931 38 1 8.6243 7.5998 -0.8868 39 1 8.7491 9.8130 0.0029 40 1 0.9180 -2.5743 0.5896 41 1 2.5985 -3.1406 0.4351 42 1 0.5918 -5.9496 -0.8468 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488581395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:29 Heat of formation + Delta-G solvation = -23.156794 kcal Electronic energy + Delta-G solvation = -22809.864005 eV Core-core repulsion = 19212.114679 eV Total energy + Delta-G solvation = -3597.749326 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.164 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.35599 -40.33734 -38.20603 -36.72040 -35.86614 -34.75258 -33.79039 -33.64550 -32.22010 -29.13143 -28.79099 -28.09194 -25.07836 -24.15799 -22.77277 -22.27922 -21.19277 -20.89090 -19.01354 -18.66519 -18.16207 -17.62757 -17.09058 -17.04693 -16.58018 -16.43422 -15.87383 -15.66632 -15.47606 -14.87687 -14.66356 -14.37488 -14.27050 -14.20143 -13.74877 -13.65012 -13.25261 -13.12760 -12.98779 -12.81448 -12.77708 -12.73857 -12.29102 -12.04455 -11.84621 -11.77794 -11.21963 -11.08877 -10.84223 -10.76703 -10.30140 -9.92410 -9.89900 -8.53649 -8.20226 -6.54539 0.28570 0.58628 1.38186 1.42589 1.51192 1.63123 2.28900 2.35225 2.92940 3.01378 3.15160 3.41807 3.71367 3.96589 3.97504 4.22960 4.34027 4.36752 4.39595 4.45253 4.59814 4.67703 4.77347 4.81077 4.82972 4.86503 4.90834 4.97918 5.02189 5.13733 5.28162 5.30958 5.34831 5.52580 5.71918 5.77399 5.99191 6.16770 6.37644 6.61002 6.92667 6.92959 7.02985 7.19016 8.14030 8.67710 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.035374 B = 0.002233 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 791.362482 B =12537.510901 C =12745.428611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.197 3.803 3 C -0.350 4.350 4 C 0.474 3.526 5 N -0.722 5.722 6 C 0.669 3.331 7 O -0.663 6.663 8 N -0.720 5.720 9 C 0.140 3.860 10 C -0.111 4.111 11 C -0.118 4.118 12 C 0.076 3.924 13 O -0.600 6.600 14 N -0.467 5.467 15 H 0.452 0.548 16 N -0.350 5.350 17 C 0.268 3.732 18 C -0.562 4.562 19 H 0.057 0.943 20 C 0.032 3.968 21 N -0.911 5.911 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.276 1.276 25 H -0.270 1.270 26 H 0.108 0.892 27 H 0.108 0.892 28 H 0.082 0.918 29 H 0.172 0.828 30 H 0.407 0.593 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.059 0.941 39 H 0.398 0.602 40 H 0.069 0.931 41 H 0.042 0.958 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.373 15.296 2.196 18.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.071 3.929 3 C -0.383 4.383 4 C 0.221 3.779 5 N -0.487 5.487 6 C 0.367 3.633 7 O -0.548 6.548 8 N -0.374 5.374 9 C 0.015 3.985 10 C -0.149 4.149 11 C -0.156 4.156 12 C -0.001 4.001 13 O -0.409 6.409 14 N -0.191 5.191 15 H 0.301 0.699 16 N -0.137 5.137 17 C 0.151 3.849 18 C -0.600 4.600 19 H 0.075 0.925 20 C -0.170 4.170 21 N -0.549 5.549 22 Si 0.787 3.213 23 H -0.203 1.203 24 H -0.201 1.201 25 H -0.195 1.195 26 H 0.126 0.874 27 H 0.126 0.874 28 H 0.101 0.899 29 H 0.189 0.811 30 H 0.243 0.757 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.248 0.752 40 H 0.087 0.913 41 H 0.060 0.940 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.744 14.689 2.257 17.243 hybrid contribution 0.646 -0.656 -0.829 1.239 sum 9.390 14.033 1.428 16.945 Atomic orbital electron populations 1.20807 0.83774 1.05498 1.05347 1.21818 0.95978 0.84534 0.90549 1.22087 0.91428 1.00198 1.24546 1.18888 0.91515 0.82527 0.85010 1.68102 1.28794 1.04122 1.47662 1.17006 0.83698 0.85229 0.77351 1.90700 1.25784 1.79096 1.59181 1.44665 1.07858 1.05697 1.79178 1.21140 0.98317 0.78272 1.00764 1.21545 0.95121 0.94028 1.04203 1.21384 0.97572 0.93660 1.02982 1.22201 0.96620 0.80255 1.01067 1.86424 1.37637 1.19024 1.97831 1.44351 0.98977 1.04574 1.71176 0.69930 1.47756 0.93054 1.07833 1.65094 1.19704 0.96178 0.70920 0.98094 1.21535 1.47326 0.98563 0.92566 0.92505 1.25569 0.94208 0.95934 1.01316 1.69959 1.44890 1.07241 1.32813 0.85481 0.78087 0.78217 0.79505 1.20308 1.20142 1.19501 0.87367 0.87367 0.89883 0.81124 0.75735 0.93459 0.93294 0.89732 0.89855 0.91805 0.91711 0.92205 0.92297 0.75218 0.91318 0.93964 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.64 9.92 71.24 0.71 -1.94 16 2 C 0.20 7.11 6.92 41.08 0.28 7.40 16 3 C -0.35 -14.06 9.41 22.24 0.21 -13.85 16 4 C 0.47 19.43 8.07 133.95 1.08 20.51 16 5 N -0.72 -29.73 10.59 -322.55 -3.42 -33.15 16 6 C 0.67 27.41 8.47 179.35 1.52 28.93 16 7 O -0.66 -30.62 13.26 -4.79 -0.06 -30.69 16 8 N -0.72 -22.19 5.56 -479.05 -2.66 -24.85 16 9 C 0.14 3.55 5.67 86.38 0.49 4.04 16 10 C -0.11 -1.78 5.33 30.59 0.16 -1.62 16 11 C -0.12 -1.90 5.58 30.59 0.17 -1.73 16 12 C 0.08 0.96 7.05 71.98 0.51 1.47 16 13 O -0.60 -9.05 13.66 -148.98 -2.03 -11.08 16 14 N -0.47 -17.44 7.38 -54.79 -0.40 -17.84 16 15 H 0.45 14.75 8.96 -213.28 -1.91 12.84 16 16 N -0.35 -13.51 3.63 -337.53 -1.23 -14.74 16 17 C 0.27 11.29 5.71 85.63 0.49 11.78 16 18 C -0.56 -26.54 9.39 25.60 0.24 -26.30 16 19 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 20 C 0.03 1.54 5.46 84.66 0.46 2.01 16 21 N -0.91 -45.61 13.29 21.45 0.28 -45.33 16 22 Si 0.96 38.89 29.54 68.60 2.03 40.92 16 23 H -0.28 -11.19 7.11 99.48 0.71 -10.48 16 24 H -0.28 -10.87 7.11 99.48 0.71 -10.17 16 25 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 26 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.11 2.53 8.14 -2.38 -0.02 2.51 16 28 H 0.08 2.46 7.80 -2.39 -0.02 2.44 16 29 H 0.17 7.31 5.77 -2.91 -0.02 7.29 16 30 H 0.41 10.53 8.57 -92.71 -0.79 9.74 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.40 2.13 9.12 -74.06 -0.68 1.46 16 40 H 0.07 2.89 7.88 -2.39 -0.02 2.87 16 41 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 42 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 Total: -1.00 -66.62 359.01 -3.50 -70.12 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: -2.32 Total: 35.93 kcal Atomic # 6 Polarization: 24.38 SS G_CDS: 6.32 Total: 30.70 kcal Atomic # 7 Polarization: -128.48 SS G_CDS: -7.43 Total: -135.90 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -2.10 Total: -41.77 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -66.62 -3.50 -70.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488581395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.961 kcal (2) G-P(sol) polarization free energy of solvation -66.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds