Wall clock time and date at job start Fri Apr 10 2020 17:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21278 * 119.99926 * 2 1 4 4 N 1.34771 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.47425 * 125.64767 * 359.69212 * 4 2 1 6 6 C 1.54910 * 104.83231 * 156.13676 * 5 4 2 7 7 C 1.55160 * 101.58122 * 37.00939 * 6 5 4 8 8 C 1.53000 * 110.72019 * 82.86150 * 7 6 5 9 9 C 1.50697 * 110.71993 * 206.13269 * 7 6 5 10 10 O 1.21284 * 120.00041 * 354.97378 * 9 7 6 11 11 N 1.34778 * 120.00346 * 174.97465 * 9 7 6 12 12 C 1.47070 * 136.05226 * 359.63537 * 11 9 7 13 13 C 1.53235 * 88.08015 * 207.20242 * 12 11 9 14 14 O 1.42901 * 114.02114 * 87.71022 * 13 12 11 15 15 C 1.50699 * 114.50491 * 220.45844 * 13 12 11 16 16 H 1.08005 * 120.00445 * 93.84394 * 15 13 12 17 17 C 1.37879 * 120.00007 * 273.84420 * 15 13 12 18 18 N 1.31514 * 119.99872 * 359.97438 * 17 15 13 19 19 Si 1.86796 * 120.00367 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47333 * 59.99349 * 19 17 15 21 21 H 1.48501 * 109.47256 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46860 * 299.99823 * 19 17 15 23 23 C 1.47061 * 136.06158 * 180.02562 * 11 9 7 24 24 C 1.47026 * 125.65100 * 180.02562 * 4 2 1 25 25 H 1.08989 * 109.47272 * 240.00019 * 1 2 3 26 26 H 1.08999 * 109.46732 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46686 * 119.99345 * 1 2 3 28 28 H 1.09001 * 110.36478 * 274.97629 * 5 4 2 29 29 H 1.08998 * 110.36859 * 37.30006 * 5 4 2 30 30 H 1.08991 * 111.00552 * 278.93287 * 6 5 4 31 31 H 1.09002 * 111.00267 * 155.08153 * 6 5 4 32 32 H 1.09002 * 109.47458 * 305.02211 * 8 7 6 33 33 H 1.09005 * 109.47376 * 65.02345 * 8 7 6 34 34 H 1.08996 * 109.47089 * 185.02292 * 8 7 6 35 35 H 1.08998 * 113.46730 * 321.93343 * 12 11 9 36 36 H 1.09001 * 113.46852 * 92.37142 * 12 11 9 37 37 H 0.96708 * 113.99373 * 86.38953 * 14 13 12 38 38 H 0.97002 * 120.00336 * 180.02562 * 18 17 15 39 39 H 1.08999 * 113.46553 * 267.62495 * 23 11 9 40 40 H 1.08996 * 113.46751 * 38.00153 * 23 11 9 41 41 H 1.09004 * 109.87531 * 300.21113 * 24 4 2 42 42 H 1.09000 * 109.87938 * 61.37366 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5730 -2.5102 0.0076 6 6 2.6543 -3.4381 -0.6004 7 6 3.9549 -2.8233 -0.0191 8 6 4.2127 -3.3415 1.3972 9 6 5.1297 -3.1144 -0.9169 10 8 4.9894 -3.8290 -1.8868 11 7 6.3364 -2.5806 -0.6422 12 6 6.8918 -1.6949 0.3923 13 6 7.9388 -1.2417 -0.6307 14 8 7.5192 -0.1455 -1.4458 15 6 9.3271 -1.0702 -0.0702 16 1 10.0361 -1.8831 -0.1256 17 6 9.6922 0.1244 0.5135 18 7 8.8290 1.1143 0.5806 19 14 11.4132 0.3373 1.2077 20 1 12.4110 0.1476 0.1243 21 1 11.5523 1.7021 1.7761 22 1 11.6443 -0.6689 2.2751 23 6 7.6755 -2.6217 -1.2487 24 6 3.6440 -1.3120 0.0011 25 1 -0.3633 -0.5138 0.8899 26 1 -0.3633 1.0277 -0.0005 27 1 -0.3633 -0.5137 -0.8901 28 1 1.3406 -2.8161 1.0276 29 1 0.6732 -2.5226 -0.6074 30 1 2.6488 -3.3835 -1.6889 31 1 2.5226 -4.4658 -0.2617 32 1 3.3387 -3.1486 2.0194 33 1 4.4043 -4.4140 1.3625 34 1 5.0786 -2.8312 1.8188 35 1 6.2101 -0.9000 0.6948 36 1 7.3172 -2.2315 1.2404 37 1 7.6865 0.7226 -1.0537 38 1 9.0859 1.9549 0.9908 39 1 8.3120 -3.4078 -0.8425 40 1 7.6588 -2.6142 -2.3385 41 1 4.0639 -0.8353 -0.8847 42 1 4.0609 -0.8595 0.9009 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000527010861.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:41:48 Heat of formation + Delta-G solvation = -79.944516 kcal Electronic energy + Delta-G solvation = -25277.517025 eV Core-core repulsion = 21645.012447 eV Total energy + Delta-G solvation = -3632.504578 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.63433 -39.37955 -38.02439 -36.73450 -34.05062 -33.04615 -32.18545 -29.99956 -29.90216 -28.36324 -26.49393 -25.42489 -25.12331 -23.62821 -21.67319 -19.61127 -19.38334 -18.16022 -17.45263 -16.88026 -16.40520 -16.04326 -15.43471 -15.32351 -14.99984 -14.65934 -14.24225 -14.06596 -13.66269 -13.52672 -13.01725 -12.77050 -12.68785 -12.59400 -12.46101 -12.36824 -12.26122 -11.94090 -11.89186 -11.56348 -11.47015 -11.10029 -11.04795 -10.91350 -10.77255 -10.49362 -10.26437 -9.89746 -9.60281 -9.18951 -8.77547 -8.66912 -8.40283 -7.89024 -6.39681 -4.51046 2.64531 2.87343 3.11629 3.15944 3.22641 3.24056 3.49043 4.17869 4.25557 4.40731 4.72539 4.78866 4.85162 5.01450 5.07083 5.10937 5.13998 5.22241 5.33519 5.56175 5.57927 5.69787 5.72376 5.76468 5.83865 5.92195 6.00730 6.06164 6.11319 6.19845 6.25601 6.40030 6.46752 6.60321 6.68454 7.09821 7.49337 7.62842 7.79877 8.16790 8.43993 8.52497 8.67764 9.20561 9.49872 10.66837 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.004645 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.944497 B = 6026.202494 C = 6896.568640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.521 3.479 3 O -0.540 6.540 4 N -0.619 5.619 5 C 0.100 3.900 6 C -0.109 4.109 7 C -0.087 4.087 8 C -0.135 4.135 9 C 0.551 3.449 10 O -0.560 6.560 11 N -0.629 5.629 12 C 0.070 3.930 13 C 0.241 3.759 14 O -0.571 6.571 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.909 3.091 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.274 1.274 23 C 0.106 3.894 24 C 0.124 3.876 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.395 0.605 38 H 0.275 0.725 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.747 -6.813 3.677 15.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.310 3.690 3 O -0.416 6.416 4 N -0.355 5.355 5 C -0.023 4.023 6 C -0.147 4.147 7 C -0.091 4.091 8 C -0.192 4.192 9 C 0.339 3.661 10 O -0.440 6.440 11 N -0.361 5.361 12 C -0.053 4.053 13 C 0.199 3.801 14 O -0.385 6.385 15 C -0.575 4.575 16 H 0.090 0.910 17 C -0.130 4.130 18 N -0.536 5.536 19 Si 0.736 3.264 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.016 4.016 24 C 0.001 3.999 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.086 0.914 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.948 -6.881 2.795 15.802 hybrid contribution 1.003 0.509 0.923 1.455 sum -12.945 -6.373 3.718 14.900 Atomic orbital electron populations 1.21884 0.91466 1.05316 1.03989 1.20503 0.90309 0.82061 0.76127 1.90775 1.70742 1.30567 1.49547 1.48559 1.07268 1.05945 1.73707 1.22414 0.96995 0.81934 1.00997 1.22740 0.91117 0.98711 1.02124 1.21738 0.94467 0.95954 0.96903 1.21812 1.02769 1.01574 0.93075 1.19471 0.82331 0.79182 0.85127 1.90635 1.84135 1.39377 1.29874 1.49682 1.07511 1.48057 1.30852 1.24236 0.96074 0.91109 0.93851 1.19468 0.90837 0.83771 0.86022 1.86050 1.85308 1.19050 1.48069 1.21375 0.97437 1.00032 1.38615 0.90992 1.25079 0.98143 0.95319 0.94430 1.69256 1.35129 1.04666 1.44553 0.86375 0.83287 0.77468 0.79311 1.19819 1.20962 1.19889 1.23352 0.80179 0.98844 0.99227 1.21933 0.80422 0.93966 1.03582 0.89568 0.88989 0.89529 0.91037 0.90222 0.89158 0.89253 0.91573 0.91743 0.91173 0.91571 0.90049 0.74862 0.91419 0.89642 0.91535 0.90486 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 9.32 36.01 0.34 -1.13 16 2 C 0.52 7.55 7.96 -10.98 -0.09 7.46 16 3 O -0.54 -10.61 17.41 5.56 0.10 -10.52 16 4 N -0.62 -8.48 3.33 -170.52 -0.57 -9.05 16 5 C 0.10 0.96 6.37 -2.53 -0.02 0.95 16 6 C -0.11 -1.31 5.63 -24.58 -0.14 -1.45 16 7 C -0.09 -1.30 0.65 -153.83 -0.10 -1.40 16 8 C -0.13 -1.67 8.32 37.16 0.31 -1.36 16 9 C 0.55 10.71 6.64 -10.99 -0.07 10.64 16 10 O -0.56 -12.35 16.54 5.55 0.09 -12.26 16 11 N -0.63 -12.89 3.63 -185.40 -0.67 -13.57 16 12 C 0.07 1.47 6.16 -8.64 -0.05 1.41 16 13 C 0.24 5.74 1.57 -91.40 -0.14 5.59 16 14 O -0.57 -14.94 13.53 -35.23 -0.48 -15.42 16 15 C -0.54 -13.30 8.70 -34.44 -0.30 -13.60 16 16 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 17 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 18 N -0.90 -22.88 11.01 55.43 0.61 -22.27 16 19 Si 0.91 19.35 29.54 -169.99 -5.02 14.33 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C 0.11 2.29 8.03 -8.52 -0.07 2.22 16 24 C 0.12 2.03 5.15 -3.07 -0.02 2.01 16 25 H 0.09 0.56 8.14 -51.94 -0.42 0.14 16 26 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 27 H 0.09 0.60 7.86 -51.93 -0.41 0.19 16 28 H 0.07 0.55 7.71 -51.93 -0.40 0.15 16 29 H 0.08 0.58 7.49 -51.93 -0.39 0.19 16 30 H 0.09 1.26 7.49 -51.93 -0.39 0.87 16 31 H 0.09 0.90 8.04 -51.93 -0.42 0.48 16 32 H 0.07 0.67 7.44 -51.93 -0.39 0.29 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 35 H 0.07 1.41 6.82 -51.93 -0.35 1.06 16 36 H 0.08 1.60 8.10 -51.93 -0.42 1.18 16 37 H 0.39 10.53 6.32 45.56 0.29 10.82 16 38 H 0.28 6.73 8.31 -40.82 -0.34 6.39 16 39 H 0.09 1.67 8.10 -51.93 -0.42 1.25 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.08 1.53 7.81 -51.93 -0.41 1.13 16 42 H 0.08 1.34 7.15 -51.93 -0.37 0.97 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -31.30 341.93 -6.89 -38.19 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -5.66 Total: 12.35 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: -0.45 Total: 13.06 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: -0.63 Total: -44.89 kcal Atomic # 8 Polarization: -37.91 SS G_CDS: -0.29 Total: -38.20 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.02 Total: 14.33 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.30 -6.89 -38.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000527010861.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.751 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds