Wall clock time and date at job start Fri Apr 10 2020 17:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00494 * 2 1 4 4 C 1.52998 * 109.47073 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47176 * 63.60627 * 4 3 2 6 6 C 1.37096 * 119.99570 * 266.31484 * 5 4 3 7 7 H 1.08006 * 119.99844 * 142.55118 * 6 5 4 8 8 C 1.38951 * 120.00313 * 322.54639 * 6 5 4 9 9 N 1.31412 * 120.00037 * 160.71511 * 8 6 5 10 10 Si 1.86799 * 119.99809 * 340.72227 * 8 6 5 11 11 H 1.48503 * 109.47067 * 95.24017 * 10 8 6 12 12 H 1.48508 * 109.46978 * 215.23640 * 10 8 6 13 13 H 1.48493 * 109.47276 * 335.23664 * 10 8 6 14 14 C 1.34772 * 120.00201 * 86.31817 * 5 4 3 15 15 O 1.21291 * 120.00030 * 359.97438 * 14 5 4 16 16 C 1.50700 * 120.00111 * 180.02562 * 14 5 4 17 17 H 1.09006 * 110.85997 * 59.29268 * 16 14 5 18 18 C 1.54627 * 110.96880 * 295.50799 * 16 14 5 19 19 C 1.51285 * 104.19487 * 266.64230 * 18 16 14 20 20 O 1.21276 * 124.94158 * 163.78232 * 19 18 16 21 21 N 1.34426 * 110.11468 * 343.74462 * 19 18 16 22 22 C 1.46499 * 124.34960 * 179.56895 * 21 19 18 23 23 C 1.52998 * 117.49849 * 8.77852 * 22 21 19 24 24 C 1.52995 * 117.49991 * 300.11470 * 22 21 19 25 25 C 1.46765 * 111.29634 * 359.59552 * 21 19 18 26 26 H 1.08998 * 109.46569 * 59.99936 * 1 2 3 27 27 H 1.08998 * 109.47265 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46950 * 300.00532 * 1 2 3 29 29 H 1.09001 * 109.47066 * 59.99889 * 3 2 1 30 30 H 1.09001 * 109.47107 * 299.99871 * 3 2 1 31 31 H 1.08996 * 109.47140 * 303.60158 * 4 3 2 32 32 H 1.09002 * 109.46751 * 183.59950 * 4 3 2 33 33 H 0.97000 * 120.00277 * 180.02562 * 9 8 6 34 34 H 1.09004 * 110.48855 * 25.31384 * 18 16 14 35 35 H 1.08999 * 110.49266 * 147.96300 * 18 16 14 36 36 H 1.09002 * 115.54504 * 154.43904 * 22 21 19 37 37 H 1.09006 * 117.49643 * 359.97438 * 23 22 21 38 38 H 1.08999 * 117.50207 * 145.01764 * 23 22 21 39 39 H 1.08998 * 117.49586 * 214.97563 * 24 22 21 40 40 H 1.08998 * 117.50010 * 0.02562 * 24 22 21 41 41 H 1.09001 * 110.24200 * 258.01406 * 25 21 19 42 42 H 1.08999 * 110.23993 * 136.02028 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9743 0.5335 -1.2363 6 6 4.1681 -0.8234 -1.2653 7 1 3.8980 -1.3887 -2.1450 8 6 4.7120 -1.4713 -0.1630 9 7 4.5567 -2.7684 -0.0205 10 14 5.6638 -0.4984 1.1164 11 1 4.7569 -0.1287 2.2328 12 1 6.7798 -1.3272 1.6390 13 1 6.2115 0.7339 0.4947 14 6 4.1875 1.2686 -2.3456 15 8 4.0157 2.4690 -2.3200 16 6 4.6383 0.5989 -3.6182 17 1 3.9136 -0.1485 -3.9412 18 6 6.0411 -0.0286 -3.4463 19 6 6.9900 1.0466 -3.9281 20 8 8.1819 1.0717 -3.7055 21 7 6.3200 1.9695 -4.6397 22 6 6.9353 3.1531 -5.2454 23 6 8.4626 3.2415 -5.2299 24 6 7.6340 4.1426 -4.3108 25 6 4.8929 1.6394 -4.7312 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6888 1.8463 -0.8900 31 1 3.8524 0.5890 0.8568 32 1 3.9787 2.1782 0.0652 33 1 4.9360 -3.2206 0.7492 34 1 6.2290 -0.2615 -2.3982 35 1 6.1362 -0.9243 -4.0601 36 1 6.4163 3.5606 -6.1130 37 1 9.0097 2.4192 -4.7686 38 1 8.9485 3.7077 -6.0870 39 1 7.5751 5.2012 -4.5638 40 1 7.6363 3.9128 -3.2453 41 1 4.6669 1.2104 -5.7074 42 1 4.2881 2.5300 -4.5606 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000569927097.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:42:08 Heat of formation + Delta-G solvation = -57.460956 kcal Electronic energy + Delta-G solvation = -25583.865276 eV Core-core repulsion = 21952.335659 eV Total energy + Delta-G solvation = -3631.529617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 296.157 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.52096 -38.83920 -37.17204 -36.30731 -35.56467 -34.82321 -32.01752 -31.00034 -29.14334 -27.19750 -25.91467 -24.96427 -23.45232 -22.53865 -22.19035 -21.53990 -18.98829 -18.76176 -17.30787 -16.74352 -16.52750 -15.83992 -15.73780 -15.28819 -15.00338 -14.71549 -14.54050 -14.08044 -13.83872 -13.71009 -13.36767 -12.91574 -12.83115 -12.72123 -12.53324 -11.99745 -11.75207 -11.71091 -11.43953 -11.26999 -11.06997 -10.93145 -10.91216 -10.84016 -10.66649 -10.26120 -10.12809 -9.91407 -9.25298 -9.12979 -9.06560 -8.61946 -8.17823 -7.86957 -6.45927 -4.05067 2.94412 3.04212 3.22040 3.22949 3.28114 3.57410 4.05778 4.09083 4.17671 4.39489 4.77747 4.92275 4.95219 5.01631 5.16721 5.25445 5.38638 5.50977 5.59109 5.64008 5.69109 5.75323 5.81360 5.84318 5.89178 5.91555 6.00432 6.03645 6.09880 6.19723 6.22640 6.35961 6.42452 6.47036 6.64880 6.99192 7.28144 7.46955 7.74746 8.04568 8.20432 8.58194 8.91418 9.29019 9.59596 10.64447 Molecular weight = 296.16amu Principal moments of inertia in cm(-1) A = 0.017418 B = 0.005838 C = 0.005097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.110751 B = 4794.875544 C = 5491.937543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.357 6.357 3 C 0.056 3.944 4 C 0.100 3.900 5 N -0.448 5.448 6 C -0.332 4.332 7 H 0.106 0.894 8 C 0.075 3.925 9 N -0.853 5.853 10 Si 0.868 3.132 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.262 1.262 14 C 0.481 3.519 15 O -0.597 6.597 16 C -0.097 4.097 17 H 0.115 0.885 18 C -0.137 4.137 19 C 0.519 3.481 20 O -0.539 6.539 21 N -0.589 5.589 22 C 0.086 3.914 23 C -0.194 4.194 24 C -0.190 4.190 25 C 0.118 3.882 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.030 0.970 29 H 0.042 0.958 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.274 0.726 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.481 7.113 -6.552 9.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.275 6.275 3 C -0.022 4.022 4 C -0.023 4.023 5 N -0.167 5.167 6 C -0.459 4.459 7 H 0.123 0.877 8 C -0.133 4.133 9 N -0.488 5.488 10 Si 0.697 3.303 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.187 1.187 14 C 0.270 3.730 15 O -0.482 6.482 16 C -0.118 4.118 17 H 0.133 0.867 18 C -0.177 4.177 19 C 0.309 3.691 20 O -0.417 6.417 21 N -0.321 5.321 22 C -0.018 4.018 23 C -0.232 4.232 24 C -0.229 4.229 25 C -0.005 4.005 26 H 0.051 0.949 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.125 0.875 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.792 7.384 -6.321 9.884 hybrid contribution -0.002 0.522 0.909 1.048 sum -1.793 7.907 -5.413 9.748 Atomic orbital electron populations 1.22661 0.82981 1.02116 0.98751 1.88213 1.17704 1.26592 1.95023 1.22845 0.94829 0.85223 0.99343 1.21753 0.92324 0.98580 0.89624 1.43592 1.57340 1.07865 1.07924 1.18946 1.42420 0.79650 1.04917 0.87659 1.25206 0.95766 0.95174 0.97140 1.69722 1.40776 1.08912 1.29361 0.87088 0.80144 0.81029 0.82084 1.20164 1.21370 1.18654 1.19936 0.80780 0.86284 0.85987 1.90541 1.57652 1.14641 1.85412 1.21886 0.98353 0.97619 0.93944 0.86700 1.22318 0.92015 0.96953 1.06463 1.21249 0.88022 0.83238 0.76625 1.90534 1.14937 1.77354 1.58915 1.47608 1.09400 1.22502 1.52541 1.21393 0.93441 0.88723 0.98215 1.23761 0.93128 1.04076 1.02193 1.23308 1.04882 0.96357 0.98368 1.22047 0.80875 0.99970 0.97625 0.94907 0.90047 0.95184 0.93959 0.93203 0.90677 0.89971 0.91526 0.85644 0.87523 0.85762 0.85127 0.88971 0.88619 0.88725 0.91105 0.88815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.36 -7.34 10.29 -35.23 -0.36 -7.70 16 3 C 0.06 1.06 6.27 37.16 0.23 1.29 16 4 C 0.10 2.17 4.43 -4.04 -0.02 2.15 16 5 N -0.45 -10.18 2.15 -114.81 -0.25 -10.43 16 6 C -0.33 -8.07 6.91 -14.93 -0.10 -8.18 16 7 H 0.11 2.64 7.23 -52.48 -0.38 2.26 16 8 C 0.08 1.92 5.34 -17.47 -0.09 1.83 16 9 N -0.85 -22.88 13.96 55.50 0.77 -22.10 16 10 Si 0.87 20.40 24.82 -169.99 -4.22 16.18 16 11 H -0.27 -6.25 6.70 56.52 0.38 -5.87 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.26 -6.30 7.10 56.52 0.40 -5.89 16 14 C 0.48 10.31 7.00 -10.99 -0.08 10.24 16 15 O -0.60 -13.71 15.16 5.55 0.08 -13.62 16 16 C -0.10 -1.70 2.64 -90.14 -0.24 -1.93 16 17 H 0.12 1.83 7.68 -51.93 -0.40 1.43 16 18 C -0.14 -2.52 5.83 -26.74 -0.16 -2.68 16 19 C 0.52 10.00 7.88 -10.86 -0.09 9.91 16 20 O -0.54 -11.68 14.69 5.56 0.08 -11.59 16 21 N -0.59 -9.82 3.27 -164.85 -0.54 -10.36 16 22 C 0.09 1.25 6.88 -67.93 -0.47 0.78 16 23 C -0.19 -2.77 9.78 -26.69 -0.26 -3.03 16 24 C -0.19 -2.79 10.35 -26.69 -0.28 -3.06 16 25 C 0.12 1.78 6.70 -3.13 -0.02 1.76 16 26 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.70 3.20 -51.93 -0.17 1.54 16 32 H 0.08 1.72 7.54 -51.93 -0.39 1.33 16 33 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 34 H 0.13 2.69 6.43 -51.93 -0.33 2.36 16 35 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 36 H 0.12 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.13 2.27 5.29 -51.93 -0.27 1.99 16 38 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.09 1.50 6.98 -51.93 -0.36 1.13 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -30.61 338.47 -5.89 -36.50 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.11 Total: 7.36 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -0.45 Total: 10.67 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.01 Total: -42.89 kcal Atomic # 8 Polarization: -32.72 SS G_CDS: -0.20 Total: -32.92 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.22 Total: 16.18 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.61 -5.89 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569927097.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.960 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds