Wall clock time and date at job start Fri Apr 10 2020 17:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99934 * 2 1 4 4 H 1.07995 * 119.99997 * 202.32627 * 3 2 1 5 5 C 1.38812 * 120.00006 * 22.32316 * 3 2 1 6 6 N 1.31624 * 119.99934 * 15.38811 * 5 3 2 7 7 Si 1.86796 * 120.00216 * 195.38251 * 5 3 2 8 8 H 1.48503 * 109.46892 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47519 * 120.00148 * 7 5 3 10 10 H 1.48496 * 109.47519 * 240.00507 * 7 5 3 11 11 C 1.46494 * 119.99978 * 179.97438 * 2 1 3 12 12 C 1.53045 * 109.46087 * 60.02781 * 11 2 1 13 13 C 1.53193 * 109.31483 * 178.59883 * 12 11 2 14 14 N 1.46926 * 108.76374 * 54.65537 * 13 12 11 15 15 C 1.34776 * 120.63229 * 126.36143 * 14 13 12 16 16 O 1.21283 * 120.00335 * 184.93573 * 15 14 13 17 17 C 1.50700 * 119.99627 * 4.93184 * 15 14 13 18 18 C 1.53005 * 110.45669 * 289.37773 * 17 15 14 19 19 C 1.54511 * 110.51277 * 166.63271 * 17 15 14 20 20 C 1.54474 * 104.06069 * 241.35690 * 19 17 15 21 21 O 1.44430 * 104.80657 * 336.01705 * 20 19 17 22 22 C 1.44425 * 105.27022 * 40.51072 * 21 20 19 23 23 C 1.46932 * 118.73984 * 306.38740 * 14 13 12 24 24 C 1.53044 * 109.46232 * 299.97328 * 11 2 1 25 25 H 1.08997 * 109.47106 * 273.24635 * 1 2 3 26 26 H 1.08996 * 109.47096 * 153.24189 * 1 2 3 27 27 H 1.09001 * 109.47001 * 33.24191 * 1 2 3 28 28 H 0.96996 * 119.99937 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.46050 * 179.97438 * 11 2 1 30 30 H 1.08994 * 109.49528 * 298.56715 * 12 11 2 31 31 H 1.09006 * 109.49375 * 58.65979 * 12 11 2 32 32 H 1.09000 * 109.59773 * 294.87193 * 13 12 11 33 33 H 1.08998 * 109.70353 * 174.50618 * 13 12 11 34 34 H 1.09002 * 109.46815 * 52.05431 * 18 17 15 35 35 H 1.09001 * 109.46730 * 172.04759 * 18 17 15 36 36 H 1.08999 * 109.47585 * 292.05454 * 18 17 15 37 37 H 1.09000 * 110.50540 * 359.97438 * 19 17 15 38 38 H 1.08991 * 110.51590 * 122.70568 * 19 17 15 39 39 H 1.09004 * 110.37436 * 217.18495 * 20 19 17 40 40 H 1.08997 * 110.47412 * 94.89713 * 20 19 17 41 41 H 1.09003 * 110.36847 * 200.66144 * 22 21 20 42 42 H 1.08999 * 110.37257 * 78.32757 * 22 21 20 43 43 H 1.08995 * 109.58197 * 293.81628 * 23 14 13 44 44 H 1.08995 * 109.70308 * 173.46845 * 23 14 13 45 45 H 1.08997 * 109.49834 * 301.33778 * 24 11 2 46 46 H 1.09005 * 109.49641 * 61.40202 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3553 5 6 1.5337 2.3430 0.4566 6 7 0.4250 2.2640 1.1616 7 14 2.2781 4.0122 0.0707 8 1 3.5147 3.8292 -0.7309 9 1 1.3029 4.8224 -0.7025 10 1 2.6083 4.7120 1.3381 11 6 2.1975 -1.2687 0.0006 12 6 1.8281 -2.0713 -1.2491 13 6 2.6220 -3.3814 -1.2629 14 7 2.3850 -4.0910 0.0016 15 6 1.9580 -5.3693 0.0020 16 8 1.6802 -5.9155 1.0487 17 6 1.8255 -6.1199 -1.2980 18 6 0.6505 -5.5752 -2.1126 19 6 1.6504 -7.6323 -1.0346 20 6 2.8758 -8.2769 -1.7196 21 8 3.2756 -7.3266 -2.7311 22 6 3.1359 -6.0297 -2.1111 23 6 2.6217 -3.3804 1.2656 24 6 1.8281 -2.0702 1.2509 25 1 -0.3633 0.0582 1.0260 26 1 -0.3633 -0.9176 -0.4627 27 1 -0.3633 0.8595 -0.5633 28 1 -0.0053 3.0725 1.4810 29 1 3.2692 -1.0693 0.0000 30 1 0.7609 -2.2924 -1.2371 31 1 2.0698 -1.4902 -2.1392 32 1 3.6851 -3.1636 -1.3659 33 1 2.2935 -4.0014 -2.0970 34 1 0.7447 -4.4935 -2.2076 35 1 0.6545 -6.0287 -3.1038 36 1 -0.2847 -5.8154 -1.6069 37 1 1.6601 -7.8370 0.0360 38 1 0.7265 -7.9941 -1.4856 39 1 2.5984 -9.2257 -2.1788 40 1 3.6806 -8.4256 -0.9997 41 1 3.0581 -5.2522 -2.8711 42 1 3.9797 -5.8323 -1.4500 43 1 3.6847 -3.1626 1.3688 44 1 2.2925 -3.9977 2.1015 45 1 2.0697 -1.4885 2.1405 46 1 0.7607 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000985725844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:46 Heat of formation + Delta-G solvation = -49.381756 kcal Electronic energy + Delta-G solvation = -25753.898079 eV Core-core repulsion = 22258.551897 eV Total energy + Delta-G solvation = -3495.346182 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.11002 -38.88690 -37.47798 -35.19452 -33.93507 -32.15898 -30.95729 -29.94358 -29.53368 -26.82190 -26.03077 -25.29343 -23.27707 -23.02750 -22.46220 -21.21803 -19.61701 -18.42680 -17.30412 -16.81015 -16.46345 -16.02516 -15.49698 -15.06618 -15.00513 -14.78665 -14.38424 -13.88793 -13.70711 -13.50982 -13.31180 -13.02410 -12.70263 -12.57420 -12.32766 -12.19552 -12.09314 -11.76424 -11.57332 -11.41692 -11.09098 -11.05450 -10.93950 -10.89263 -10.77605 -10.41839 -10.23342 -10.14040 -10.01301 -9.87566 -9.68223 -9.56104 -8.59905 -8.49364 -6.78117 -5.75244 -3.19946 2.58553 2.98665 3.35661 3.43347 3.45036 3.71062 4.09257 4.41350 4.45996 4.50528 4.69287 4.87671 4.94046 5.01975 5.19884 5.28992 5.32116 5.35055 5.35460 5.44821 5.45503 5.48903 5.58539 5.61623 5.70953 5.75390 5.83243 5.85764 5.91722 6.02913 6.11886 6.22924 6.33580 6.47455 6.49971 6.57933 6.75707 6.94413 6.97913 7.34431 7.46666 7.69574 7.78502 8.16488 8.37346 9.20952 9.85188 10.34519 11.29953 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.003559 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.929679 B = 7865.480696 C = 8076.363907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.595 5.595 3 C -0.256 4.256 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.291 1.291 11 C 0.180 3.820 12 C -0.148 4.148 13 C 0.092 3.908 14 N -0.601 5.601 15 C 0.527 3.473 16 O -0.544 6.544 17 C -0.114 4.114 18 C -0.143 4.143 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.372 6.372 22 C 0.055 3.945 23 C 0.113 3.887 24 C -0.144 4.144 25 H 0.026 0.974 26 H -0.002 1.002 27 H 0.041 0.959 28 H 0.252 0.748 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.066 0.934 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.060 0.940 41 H 0.105 0.895 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -17.638 -6.812 19.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.316 5.316 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.549 5.549 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.218 1.218 11 C 0.071 3.929 12 C -0.188 4.188 13 C -0.031 4.031 14 N -0.333 5.333 15 C 0.314 3.686 16 O -0.422 6.422 17 C -0.118 4.118 18 C -0.201 4.201 19 C -0.179 4.179 20 C -0.033 4.033 21 O -0.290 6.290 22 C -0.022 4.022 23 C -0.010 4.010 24 C -0.184 4.184 25 H 0.044 0.956 26 H 0.017 0.983 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.094 0.906 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.404 -17.785 -6.401 19.206 hybrid contribution 0.145 1.191 0.165 1.211 sum 3.548 -16.594 -6.236 18.079 Atomic orbital electron populations 1.20716 0.82838 0.95557 0.99003 1.43967 1.01731 1.00194 1.85753 1.19250 0.98036 0.85281 1.35999 0.91374 1.24994 0.98102 0.98443 0.98114 1.70095 1.20498 1.26987 1.37364 0.86225 0.78445 0.84481 0.77620 1.20324 1.21657 1.21799 1.20275 0.96014 0.86059 0.90545 1.22490 1.00112 0.94625 1.01579 1.22271 1.00653 0.94588 0.85538 1.48101 1.65562 1.11503 1.08143 1.20190 0.76421 0.81655 0.90309 1.90648 1.50176 1.67945 1.33433 1.22105 0.98459 0.96799 0.94392 1.22016 0.96251 1.02025 0.99764 1.23020 0.99395 0.91687 1.03809 1.23461 0.95583 0.93499 0.90736 1.89136 1.88218 1.15569 1.36088 1.23769 0.94753 0.86992 0.96698 1.21722 0.99810 0.93870 0.85565 1.22498 0.99986 0.94376 1.01585 0.95566 0.98349 0.94014 0.93821 0.91898 0.91870 0.90622 0.91250 0.89256 0.90774 0.90835 0.91535 0.88285 0.89967 0.88861 0.92172 0.87757 0.91680 0.91670 0.89658 0.90600 0.92247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.93 8.06 59.85 0.48 4.41 16 2 N -0.60 -14.23 2.81 -173.43 -0.49 -14.71 16 3 C -0.26 -6.81 9.58 -15.06 -0.14 -6.95 16 4 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 5 C 0.00 0.05 5.03 -17.43 -0.09 -0.03 16 6 N -0.90 -26.06 10.82 55.49 0.60 -25.46 16 7 Si 0.90 21.46 29.58 -169.99 -5.03 16.43 16 8 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 11 C 0.18 3.40 2.55 -67.89 -0.17 3.22 16 12 C -0.15 -2.26 5.25 -26.61 -0.14 -2.40 16 13 C 0.09 1.10 4.62 -3.71 -0.02 1.09 16 14 N -0.60 -8.24 2.97 -172.77 -0.51 -8.75 16 15 C 0.53 7.43 6.38 -10.99 -0.07 7.36 16 16 O -0.54 -9.39 14.80 5.55 0.08 -9.31 16 17 C -0.11 -1.25 0.69 -154.09 -0.11 -1.36 16 18 C -0.14 -1.41 7.96 37.16 0.30 -1.11 16 19 C -0.14 -1.43 6.30 -25.16 -0.16 -1.59 16 20 C 0.04 0.40 7.63 37.93 0.29 0.69 16 21 O -0.37 -4.09 11.65 -35.23 -0.41 -4.50 16 22 C 0.05 0.55 5.12 37.93 0.19 0.74 16 23 C 0.11 1.69 6.44 -3.71 -0.02 1.66 16 24 C -0.14 -2.57 5.34 -26.61 -0.14 -2.71 16 25 H 0.03 0.69 7.46 -51.93 -0.39 0.30 16 26 H 0.00 -0.04 6.46 -51.93 -0.34 -0.38 16 27 H 0.04 1.08 7.23 -51.93 -0.38 0.71 16 28 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.06 1.20 7.86 -51.93 -0.41 0.79 16 30 H 0.06 1.02 6.72 -51.93 -0.35 0.67 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.88 2.51 -51.93 -0.13 0.75 16 34 H 0.07 0.74 5.57 -51.93 -0.29 0.46 16 35 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.15 6.60 -51.93 -0.34 0.81 16 38 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 39 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.89 6.23 -51.93 -0.32 0.57 16 42 H 0.06 0.67 7.85 -51.93 -0.41 0.26 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.09 1.34 7.01 -51.93 -0.36 0.98 16 45 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 46 H 0.06 1.14 7.72 -51.93 -0.40 0.74 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -30.99 343.11 -7.83 -38.82 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -7.44 Total: -0.72 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: 0.20 Total: 3.03 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.40 Total: -48.93 kcal Atomic # 8 Polarization: -13.48 SS G_CDS: -0.33 Total: -13.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.99 -7.83 -38.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985725844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.564 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds