Wall clock time and date at job start Fri Apr 10 2020 17:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99934 * 2 1 4 4 H 1.07995 * 119.99997 * 202.32627 * 3 2 1 5 5 C 1.38812 * 120.00006 * 22.32316 * 3 2 1 6 6 N 1.31624 * 119.99934 * 15.38811 * 5 3 2 7 7 Si 1.86796 * 120.00216 * 195.38251 * 5 3 2 8 8 H 1.48503 * 109.46892 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47519 * 120.00148 * 7 5 3 10 10 H 1.48496 * 109.47519 * 240.00507 * 7 5 3 11 11 C 1.46494 * 119.99978 * 179.97438 * 2 1 3 12 12 C 1.53045 * 109.46087 * 60.02781 * 11 2 1 13 13 C 1.53193 * 109.31483 * 178.59883 * 12 11 2 14 14 N 1.46926 * 108.76374 * 54.65537 * 13 12 11 15 15 C 1.34776 * 120.63229 * 126.36143 * 14 13 12 16 16 O 1.21283 * 120.00335 * 184.93573 * 15 14 13 17 17 C 1.50700 * 119.99627 * 4.93184 * 15 14 13 18 18 C 1.53005 * 110.45669 * 289.37773 * 17 15 14 19 19 C 1.54511 * 110.51277 * 166.63271 * 17 15 14 20 20 C 1.54474 * 104.06069 * 241.35690 * 19 17 15 21 21 O 1.44430 * 104.80657 * 336.01705 * 20 19 17 22 22 C 1.44425 * 105.27022 * 40.51072 * 21 20 19 23 23 C 1.46932 * 118.73984 * 306.38740 * 14 13 12 24 24 C 1.53044 * 109.46232 * 299.97328 * 11 2 1 25 25 H 1.08997 * 109.47106 * 273.24635 * 1 2 3 26 26 H 1.08996 * 109.47096 * 153.24189 * 1 2 3 27 27 H 1.09001 * 109.47001 * 33.24191 * 1 2 3 28 28 H 0.96996 * 119.99937 * 179.97438 * 6 5 3 29 29 H 1.09004 * 109.46050 * 179.97438 * 11 2 1 30 30 H 1.08994 * 109.49528 * 298.56715 * 12 11 2 31 31 H 1.09006 * 109.49375 * 58.65979 * 12 11 2 32 32 H 1.09000 * 109.59773 * 294.87193 * 13 12 11 33 33 H 1.08998 * 109.70353 * 174.50618 * 13 12 11 34 34 H 1.09002 * 109.46815 * 52.05431 * 18 17 15 35 35 H 1.09001 * 109.46730 * 172.04759 * 18 17 15 36 36 H 1.08999 * 109.47585 * 292.05454 * 18 17 15 37 37 H 1.09000 * 110.50540 * 359.97438 * 19 17 15 38 38 H 1.08991 * 110.51590 * 122.70568 * 19 17 15 39 39 H 1.09004 * 110.37436 * 217.18495 * 20 19 17 40 40 H 1.08997 * 110.47412 * 94.89713 * 20 19 17 41 41 H 1.09003 * 110.36847 * 200.66144 * 22 21 20 42 42 H 1.08999 * 110.37257 * 78.32757 * 22 21 20 43 43 H 1.08995 * 109.58197 * 293.81628 * 23 14 13 44 44 H 1.08995 * 109.70308 * 173.46845 * 23 14 13 45 45 H 1.08997 * 109.49834 * 301.33778 * 24 11 2 46 46 H 1.09005 * 109.49641 * 61.40202 * 24 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2210 -0.3553 5 6 1.5337 2.3430 0.4566 6 7 0.4250 2.2640 1.1616 7 14 2.2781 4.0122 0.0707 8 1 3.5147 3.8292 -0.7309 9 1 1.3029 4.8224 -0.7025 10 1 2.6083 4.7120 1.3381 11 6 2.1975 -1.2687 0.0006 12 6 1.8281 -2.0713 -1.2491 13 6 2.6220 -3.3814 -1.2629 14 7 2.3850 -4.0910 0.0016 15 6 1.9580 -5.3693 0.0020 16 8 1.6802 -5.9155 1.0487 17 6 1.8255 -6.1199 -1.2980 18 6 0.6505 -5.5752 -2.1126 19 6 1.6504 -7.6323 -1.0346 20 6 2.8758 -8.2769 -1.7196 21 8 3.2756 -7.3266 -2.7311 22 6 3.1359 -6.0297 -2.1111 23 6 2.6217 -3.3804 1.2656 24 6 1.8281 -2.0702 1.2509 25 1 -0.3633 0.0582 1.0260 26 1 -0.3633 -0.9176 -0.4627 27 1 -0.3633 0.8595 -0.5633 28 1 -0.0053 3.0725 1.4810 29 1 3.2692 -1.0693 0.0000 30 1 0.7609 -2.2924 -1.2371 31 1 2.0698 -1.4902 -2.1392 32 1 3.6851 -3.1636 -1.3659 33 1 2.2935 -4.0014 -2.0970 34 1 0.7447 -4.4935 -2.2076 35 1 0.6545 -6.0287 -3.1038 36 1 -0.2847 -5.8154 -1.6069 37 1 1.6601 -7.8370 0.0360 38 1 0.7265 -7.9941 -1.4856 39 1 2.5984 -9.2257 -2.1788 40 1 3.6806 -8.4256 -0.9997 41 1 3.0581 -5.2522 -2.8711 42 1 3.9797 -5.8323 -1.4500 43 1 3.6847 -3.1626 1.3688 44 1 2.2925 -3.9977 2.1015 45 1 2.0697 -1.4885 2.1405 46 1 0.7607 -2.2909 1.2394 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000985725844.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:45 Heat of formation + Delta-G solvation = -68.972209 kcal Electronic energy + Delta-G solvation = -25754.747585 eV Core-core repulsion = 22258.551897 eV Total energy + Delta-G solvation = -3496.195688 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.10755 -39.91820 -38.81325 -36.78769 -34.92108 -33.80790 -32.11505 -31.50263 -30.53271 -28.03741 -27.60460 -26.69053 -24.45141 -24.34944 -23.50548 -22.50506 -20.88958 -19.61598 -18.76518 -18.27872 -17.47184 -17.03601 -16.88034 -16.40938 -15.99924 -15.76790 -15.74542 -15.27406 -15.14199 -14.96000 -14.49457 -14.36235 -13.91678 -13.81095 -13.43638 -13.30983 -13.15757 -13.05335 -12.96079 -12.82501 -12.65265 -12.36609 -12.28552 -12.16868 -12.03457 -11.92969 -11.79822 -11.76818 -11.54207 -11.21476 -10.80054 -10.72148 -10.59289 -9.70939 -8.76780 -7.81643 -5.28188 1.46867 1.48623 1.49754 1.58740 1.90696 2.51999 2.93271 3.23940 3.32035 3.52950 3.61423 3.71570 3.84818 3.91722 4.07611 4.16768 4.18903 4.22439 4.30280 4.37630 4.52796 4.55417 4.60576 4.64271 4.72916 4.76036 4.80883 4.82704 4.88786 4.90938 4.96094 5.00953 5.06689 5.09479 5.20817 5.24335 5.35674 5.49128 5.59307 5.67581 5.70326 5.73703 6.34002 6.37318 7.05770 7.16353 7.89791 8.34392 9.22207 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.033131 B = 0.003559 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.929679 B = 7865.480696 C = 8076.363907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.183 3.817 2 N -0.610 5.610 3 C -0.258 4.258 4 H 0.076 0.924 5 C -0.056 4.056 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.173 3.827 12 C -0.136 4.136 13 C 0.098 3.902 14 N -0.601 5.601 15 C 0.524 3.476 16 O -0.581 6.581 17 C -0.112 4.112 18 C -0.141 4.141 19 C -0.141 4.141 20 C 0.044 3.956 21 O -0.382 6.382 22 C 0.056 3.944 23 C 0.123 3.877 24 C -0.132 4.132 25 H -0.007 1.007 26 H 0.027 0.973 27 H 0.014 0.986 28 H 0.246 0.754 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.114 0.886 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.059 -18.964 -9.088 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.332 5.332 3 C -0.389 4.389 4 H 0.094 0.906 5 C -0.251 4.251 6 N -0.587 5.587 7 Si 0.795 3.205 8 H -0.187 1.187 9 H -0.221 1.221 10 H -0.224 1.224 11 C 0.066 3.934 12 C -0.176 4.176 13 C -0.023 4.023 14 N -0.333 5.333 15 C 0.313 3.687 16 O -0.461 6.461 17 C -0.115 4.115 18 C -0.198 4.198 19 C -0.179 4.179 20 C -0.032 4.032 21 O -0.301 6.301 22 C -0.021 4.021 23 C -0.001 4.001 24 C -0.172 4.172 25 H 0.012 0.988 26 H 0.046 0.954 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.132 0.868 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.082 0.918 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.070 0.930 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.913 -19.144 -8.709 21.598 hybrid contribution -0.308 1.529 0.911 1.806 sum 4.605 -17.615 -7.799 19.807 Atomic orbital electron populations 1.20380 0.83401 0.95674 0.96806 1.44211 1.01729 1.01443 1.85798 1.19636 0.98294 0.86382 1.34546 0.90645 1.25759 0.98858 1.01809 0.98634 1.70263 1.22130 1.27273 1.39075 0.85220 0.78037 0.80257 0.77034 1.18656 1.22113 1.22389 1.20536 0.95592 0.84663 0.92582 1.22305 1.00106 0.95747 0.99442 1.22387 1.01497 0.92993 0.85466 1.48164 1.65332 1.11619 1.08177 1.20791 0.75283 0.81572 0.91066 1.90637 1.51620 1.68744 1.35132 1.22146 0.99720 0.96811 0.92822 1.22027 0.95321 1.02029 1.00432 1.23020 1.00660 0.91364 1.02859 1.23560 0.95048 0.93982 0.90614 1.89130 1.88293 1.16009 1.36619 1.23836 0.93855 0.87394 0.97009 1.21513 1.00191 0.92038 0.86315 1.22285 0.99225 0.95566 1.00134 0.98828 0.95428 0.96688 0.94512 0.91702 0.92754 0.90028 0.88997 0.86498 0.90833 0.88829 0.92203 0.90194 0.88637 0.86760 0.92151 0.85787 0.91831 0.89765 0.90661 0.93048 0.94133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.96 8.06 127.77 1.03 9.99 16 2 N -0.61 -29.23 2.81 -702.62 -1.97 -31.20 16 3 C -0.26 -13.70 9.58 84.03 0.80 -12.89 16 4 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 5 C -0.06 -3.08 5.03 84.86 0.43 -2.66 16 6 N -0.94 -55.78 10.82 21.65 0.23 -55.54 16 7 Si 0.97 44.43 29.58 68.60 2.03 46.46 16 8 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 9 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 11 C 0.17 6.37 2.55 45.02 0.11 6.49 16 12 C -0.14 -3.83 5.25 30.67 0.16 -3.67 16 13 C 0.10 2.02 4.62 86.36 0.40 2.42 16 14 N -0.60 -15.29 2.97 -818.91 -2.43 -17.71 16 15 C 0.52 13.95 6.38 87.66 0.56 14.51 16 16 O -0.58 -19.86 14.80 -3.04 -0.04 -19.90 16 17 C -0.11 -2.16 0.69 -51.91 -0.04 -2.20 16 18 C -0.14 -2.34 7.96 71.98 0.57 -1.77 16 19 C -0.14 -2.57 6.30 31.61 0.20 -2.37 16 20 C 0.04 0.70 7.63 72.48 0.55 1.25 16 21 O -0.38 -7.11 11.65 -148.98 -1.74 -8.85 16 22 C 0.06 0.93 5.12 72.48 0.37 1.30 16 23 C 0.12 3.55 6.44 86.36 0.56 4.11 16 24 C -0.13 -4.72 5.34 30.67 0.16 -4.55 16 25 H -0.01 -0.36 7.46 -2.39 -0.02 -0.38 16 26 H 0.03 1.16 6.46 -2.39 -0.02 1.14 16 27 H 0.01 0.78 7.23 -2.39 -0.02 0.76 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.06 2.36 7.86 -2.38 -0.02 2.35 16 30 H 0.05 1.64 6.72 -2.39 -0.02 1.62 16 31 H 0.08 2.25 8.14 -2.38 -0.02 2.24 16 32 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.12 1.82 2.51 -2.39 -0.01 1.81 16 34 H 0.07 1.23 5.57 -2.39 -0.01 1.21 16 35 H 0.09 1.21 8.13 -2.39 -0.02 1.19 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.80 6.60 -2.39 -0.02 1.79 16 38 H 0.10 1.46 7.74 -2.39 -0.02 1.44 16 39 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 1.54 6.23 -2.39 -0.01 1.52 16 42 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16 43 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.07 2.37 7.01 -2.39 -0.02 2.35 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.04 1.58 7.72 -2.38 -0.02 1.56 16 Total: -1.00 -68.35 343.11 2.92 -65.43 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.96 Total: 11.38 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: 5.88 Total: 9.94 kcal Atomic # 7 Polarization: -100.29 SS G_CDS: -4.17 Total: -104.46 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -1.78 Total: -28.75 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -68.35 2.92 -65.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000985725844.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.543 kcal (2) G-P(sol) polarization free energy of solvation -68.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds