Wall clock time and date at job start Fri Apr 10 2020 17:40:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 119.99974 * 2 1 4 4 H 1.48503 * 109.47074 * 270.00164 * 3 2 1 5 5 H 1.48507 * 109.47070 * 29.99921 * 3 2 1 6 6 H 1.48501 * 109.47094 * 149.99782 * 3 2 1 7 7 C 1.38819 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00083 * 0.02562 * 7 2 1 9 9 N 1.36936 * 119.99612 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99742 * 180.02562 * 9 7 2 11 11 C 1.53070 * 109.44278 * 84.79956 * 10 9 7 12 12 C 1.53195 * 109.29524 * 181.23594 * 11 10 9 13 13 N 1.46919 * 108.89273 * 305.57804 * 12 11 10 14 14 C 1.34783 * 120.63144 * 233.55709 * 13 12 11 15 15 O 1.21274 * 119.99655 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99922 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47009 * 180.02562 * 16 14 13 18 18 C 1.53185 * 109.54082 * 294.82074 * 17 16 14 19 19 C 1.53106 * 109.15795 * 183.24070 * 18 17 16 20 20 O 1.42903 * 109.48583 * 57.47645 * 19 18 17 21 21 C 1.42909 * 114.09538 * 298.88828 * 20 19 18 22 22 C 1.53088 * 109.41376 * 61.15950 * 21 20 19 23 23 C 1.46928 * 118.73982 * 53.53793 * 13 12 11 24 24 C 1.53039 * 109.46033 * 205.00442 * 10 9 7 25 25 H 0.96996 * 120.00214 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00238 * 0.02562 * 9 7 2 27 27 H 1.09007 * 109.45852 * 324.97183 * 10 9 7 28 28 H 1.08997 * 109.38860 * 61.35781 * 11 10 9 29 29 H 1.09003 * 109.62046 * 301.25123 * 11 10 9 30 30 H 1.09002 * 109.58720 * 185.71834 * 12 11 10 31 31 H 1.08996 * 109.58651 * 65.43731 * 12 11 10 32 32 H 1.09001 * 109.47385 * 300.00399 * 16 14 13 33 33 H 1.08997 * 109.47457 * 60.00250 * 16 14 13 34 34 H 1.08994 * 109.54776 * 54.99957 * 17 16 14 35 35 H 1.09003 * 109.52369 * 303.06102 * 18 17 16 36 36 H 1.09002 * 109.52252 * 63.24920 * 18 17 16 37 37 H 1.08999 * 109.40457 * 297.49856 * 19 18 17 38 38 H 1.08996 * 109.48400 * 177.50365 * 19 18 17 39 39 H 1.09000 * 109.48126 * 301.17114 * 21 20 19 40 40 H 1.09005 * 109.48392 * 181.14896 * 21 20 19 41 41 H 1.08999 * 109.52014 * 182.48310 * 22 21 20 42 42 H 1.08999 * 109.57594 * 62.32694 * 22 21 20 43 43 H 1.08998 * 109.58787 * 66.18123 * 23 13 12 44 44 H 1.09007 * 109.58600 * 186.46436 * 23 13 12 45 45 H 1.09002 * 109.49876 * 58.67575 * 24 10 9 46 46 H 1.09005 * 109.52615 * 298.59825 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3797 -1.2022 0.0000 10 6 4.1122 -2.4709 0.0000 11 6 4.2531 -2.9779 -1.4374 12 6 4.9923 -4.3196 -1.4307 13 7 6.2665 -4.1572 -0.7177 14 6 7.4287 -4.5179 -1.2973 15 8 7.4291 -4.9811 -2.4181 16 6 8.7275 -4.3445 -0.5530 17 6 9.8855 -4.8268 -1.4290 18 6 9.7567 -6.3351 -1.6639 19 6 10.9619 -6.8224 -2.4727 20 8 12.1664 -6.4978 -1.7756 21 6 12.3627 -5.0972 -1.5708 22 6 11.2150 -4.5410 -0.7240 23 6 6.2500 -3.5938 0.6392 24 6 5.4999 -2.2584 0.6093 25 1 -0.4850 0.8400 0.0004 26 1 3.8647 -0.3621 -0.0004 27 1 3.5651 -3.2060 0.5903 28 1 4.8193 -2.2534 -2.0227 29 1 3.2646 -3.1092 -1.8777 30 1 5.1850 -4.6358 -2.4560 31 1 4.3838 -5.0695 -0.9254 32 1 8.8698 -3.2913 -0.3108 33 1 8.6999 -4.9283 0.3670 34 1 9.8607 -4.3054 -2.3858 35 1 9.7301 -6.8521 -0.7047 36 1 8.8391 -6.5408 -2.2152 37 1 10.9641 -6.3360 -3.4481 38 1 10.8982 -7.9024 -2.6050 39 1 12.3833 -4.5883 -2.5345 40 1 13.3083 -4.9343 -1.0535 41 1 11.3395 -3.4648 -0.6037 42 1 11.2183 -5.0198 0.2552 43 1 5.7430 -4.2827 1.3148 44 1 7.2727 -3.4332 0.9807 45 1 5.3966 -1.8764 1.6250 46 1 6.0569 -1.5416 0.0059 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000990403804.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:54 Heat of formation + Delta-G solvation = -105.330197 kcal Electronic energy + Delta-G solvation = -24585.282902 eV Core-core repulsion = 21087.510613 eV Total energy + Delta-G solvation = -3497.772289 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.42775 -40.10913 -38.76126 -36.26458 -35.57445 -33.93679 -32.31905 -31.95955 -31.59444 -29.72535 -26.60235 -25.00498 -24.45206 -23.99329 -23.60763 -21.70690 -20.97211 -20.18472 -19.33318 -18.15675 -17.04099 -16.91787 -16.89600 -16.68684 -16.56918 -15.88131 -15.62907 -15.37700 -15.13004 -15.03232 -14.84725 -14.43427 -14.20116 -13.91876 -13.66080 -13.52921 -13.18908 -13.01925 -12.93208 -12.77331 -12.62590 -12.21726 -12.17743 -12.06626 -11.96581 -11.88688 -11.78883 -11.56935 -11.38505 -11.17476 -10.94888 -10.68335 -10.37681 -9.64335 -9.31696 -8.02400 -5.35884 1.36902 1.40839 1.48138 1.67119 2.04543 2.48344 2.99976 3.28848 3.47203 3.57872 3.71099 3.83829 3.86875 4.01699 4.12811 4.16032 4.19381 4.32065 4.34045 4.39893 4.46956 4.52385 4.59636 4.60696 4.70523 4.75242 4.81661 4.83774 4.84081 4.92594 4.94198 4.97008 5.03768 5.11503 5.19332 5.28821 5.29715 5.44602 5.45548 5.61801 5.77551 6.21840 6.29124 6.48848 7.08112 7.22113 7.84448 8.03067 9.19172 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.034995 B = 0.002845 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.932212 B = 9838.978241 C =10216.119718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.285 1.285 5 H -0.297 1.297 6 H -0.246 1.246 7 C -0.227 4.227 8 H 0.056 0.944 9 N -0.752 5.752 10 C 0.175 3.825 11 C -0.139 4.139 12 C 0.121 3.879 13 N -0.610 5.610 14 C 0.508 3.492 15 O -0.583 6.583 16 C -0.128 4.128 17 C -0.074 4.074 18 C -0.151 4.151 19 C 0.061 3.939 20 O -0.404 6.404 21 C 0.053 3.947 22 C -0.144 4.144 23 C 0.114 3.886 24 C -0.135 4.135 25 H 0.257 0.743 26 H 0.365 0.635 27 H 0.047 0.953 28 H 0.048 0.952 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.045 0.955 38 H 0.098 0.902 39 H 0.049 0.951 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.122 0.878 45 H 0.089 0.911 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.814 -10.229 1.900 28.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.259 4.259 3 Si 0.783 3.217 4 H -0.211 1.211 5 H -0.224 1.224 6 H -0.170 1.170 7 C -0.358 4.358 8 H 0.074 0.926 9 N -0.394 5.394 10 C 0.067 3.933 11 C -0.180 4.180 12 C -0.002 4.002 13 N -0.343 5.343 14 C 0.299 3.701 15 O -0.463 6.463 16 C -0.167 4.167 17 C -0.093 4.093 18 C -0.189 4.189 19 C -0.015 4.015 20 O -0.323 6.323 21 C -0.024 4.024 22 C -0.181 4.181 23 C -0.008 4.008 24 C -0.174 4.174 25 H 0.066 0.934 26 H 0.198 0.802 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.140 0.860 45 H 0.107 0.893 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 26.729 -10.694 1.411 28.823 hybrid contribution -0.962 1.372 -0.579 1.773 sum 25.766 -9.322 0.832 27.413 Atomic orbital electron populations 1.69889 1.07209 1.26611 1.59930 1.25527 0.96100 1.01331 1.02896 0.85399 0.78874 0.79621 0.77795 1.21117 1.22436 1.17014 1.19020 0.82707 0.93286 1.40792 0.92606 1.42817 1.02395 1.04008 1.90194 1.20418 0.92186 0.87131 0.93550 1.22420 0.99229 0.96452 0.99865 1.21412 0.84219 0.96668 0.97934 1.48303 1.06126 1.62373 1.17463 1.21362 0.86177 0.76366 0.86231 1.90630 1.87467 1.46937 1.21307 1.21818 0.89550 1.05393 0.99965 1.20928 0.93977 0.95789 0.98576 1.22283 0.99078 0.96148 1.01399 1.22589 0.83755 1.01140 0.94040 1.87890 1.41458 1.25032 1.77923 1.22761 0.99341 0.80965 0.99293 1.22221 0.93214 1.02848 0.99864 1.21940 1.03346 0.93666 0.81888 1.22155 0.94627 0.98277 1.02305 0.93447 0.80203 0.93513 0.93315 0.93141 0.90737 0.90889 0.86425 0.86388 0.92231 0.91147 0.91128 0.93679 0.88382 0.93301 0.87246 0.88901 0.90072 0.89739 0.85968 0.89298 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.95 13.97 21.65 0.30 -62.65 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 3 Si 0.96 44.77 27.73 68.60 1.90 46.67 16 4 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 6 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 7 C -0.23 -12.63 10.41 84.04 0.87 -11.75 16 8 H 0.06 3.42 8.06 -2.91 -0.02 3.40 16 9 N -0.75 -33.37 4.92 -322.76 -1.59 -34.96 16 10 C 0.18 6.03 2.73 45.03 0.12 6.15 16 11 C -0.14 -4.67 5.67 30.68 0.17 -4.50 16 12 C 0.12 3.38 6.43 86.36 0.56 3.94 16 13 N -0.61 -13.89 2.97 -818.91 -2.44 -16.33 16 14 C 0.51 11.70 7.44 87.66 0.65 12.35 16 15 O -0.58 -17.98 13.40 -3.01 -0.04 -18.02 16 16 C -0.13 -1.77 3.53 29.85 0.11 -1.67 16 17 C -0.07 -1.16 1.92 -10.67 -0.02 -1.18 16 18 C -0.15 -2.75 5.13 30.69 0.16 -2.60 16 19 C 0.06 1.09 6.84 72.02 0.49 1.58 16 20 O -0.40 -7.56 10.77 -148.98 -1.60 -9.17 16 21 C 0.05 0.70 6.84 72.01 0.49 1.19 16 22 C -0.14 -1.59 5.42 30.68 0.17 -1.42 16 23 C 0.11 1.94 6.34 86.36 0.55 2.49 16 24 C -0.13 -3.21 5.55 30.67 0.17 -3.04 16 25 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 26 H 0.36 15.52 5.66 -92.71 -0.52 15.00 16 27 H 0.05 1.70 8.08 -2.38 -0.02 1.68 16 28 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 2.27 7.00 -2.39 -0.02 2.25 16 31 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.12 1.14 7.69 -2.39 -0.02 1.13 16 33 H 0.12 1.11 7.94 -2.39 -0.02 1.09 16 34 H 0.06 1.19 7.96 -2.39 -0.02 1.17 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.64 6.05 -2.39 -0.01 1.63 16 37 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.12 1.17 5.93 -2.38 -0.01 1.16 16 45 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 46 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 Total: -1.00 -73.45 352.78 1.86 -71.59 By element: Atomic # 1 Polarization: 24.44 SS G_CDS: 0.37 Total: 24.81 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.96 Total: -1.93 kcal Atomic # 7 Polarization: -110.22 SS G_CDS: -3.72 Total: -113.94 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -1.64 Total: -27.19 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Total: -73.45 1.86 -71.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990403804.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.742 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds