Wall clock time and date at job start Fri Apr 10 2020 17:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00071 * 2 1 4 4 H 1.48497 * 109.47335 * 270.00644 * 3 2 1 5 5 H 1.48499 * 109.47299 * 30.00896 * 3 2 1 6 6 H 1.48501 * 109.46878 * 150.00406 * 3 2 1 7 7 C 1.38811 * 119.99906 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99850 * 359.97438 * 7 2 1 9 9 N 1.36935 * 120.00252 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00417 * 179.97438 * 9 7 2 11 11 C 1.53038 * 109.46180 * 155.00055 * 10 9 7 12 12 C 1.53191 * 109.31261 * 181.38737 * 11 10 9 13 13 N 1.46926 * 108.77451 * 305.36750 * 12 11 10 14 14 C 1.34780 * 120.62707 * 233.58792 * 13 12 11 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 12 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 13 18 18 C 1.52992 * 109.47482 * 179.97438 * 17 16 14 19 19 H 1.09005 * 110.43932 * 305.70172 * 18 17 16 20 20 C 1.54806 * 110.49244 * 183.15344 * 18 17 16 21 21 C 1.55222 * 101.99262 * 220.51859 * 20 18 17 22 22 O 1.44379 * 103.56402 * 36.88361 * 21 20 18 23 23 C 1.43742 * 106.97332 * 320.01051 * 22 21 20 24 24 C 1.46921 * 118.74177 * 53.86188 * 13 12 11 25 25 C 1.53041 * 109.45995 * 275.07404 * 10 9 7 26 26 H 0.97008 * 120.00047 * 359.97438 * 1 2 3 27 27 H 0.97008 * 119.99686 * 0.02562 * 9 7 2 28 28 H 1.08996 * 109.44479 * 35.03398 * 10 9 7 29 29 H 1.09002 * 109.49670 * 61.43682 * 11 10 9 30 30 H 1.09002 * 109.52529 * 301.35888 * 11 10 9 31 31 H 1.09003 * 109.58572 * 185.57865 * 12 11 10 32 32 H 1.08997 * 109.58641 * 65.15588 * 12 11 10 33 33 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 34 34 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 35 35 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 36 36 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 37 37 H 1.08999 * 110.90961 * 338.64307 * 20 18 17 38 38 H 1.09000 * 110.90701 * 102.24332 * 20 18 17 39 39 H 1.08997 * 110.52135 * 278.38716 * 21 20 18 40 40 H 1.09004 * 110.77955 * 155.50028 * 21 20 18 41 41 H 1.09004 * 109.88221 * 267.08729 * 23 22 21 42 42 H 1.08999 * 109.88153 * 145.93833 * 23 22 21 43 43 H 1.08998 * 109.58542 * 65.92391 * 24 13 12 44 44 H 1.08999 * 109.58977 * 186.35239 * 24 13 12 45 45 H 1.08999 * 109.49703 * 298.55965 * 25 10 9 46 46 H 1.08993 * 109.50252 * 58.62459 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4701 -2.1375 -0.0005 9 7 3.3795 -1.2022 -0.0011 10 6 4.1121 -2.4710 -0.0011 11 6 5.4993 -2.2588 -0.6115 12 6 6.2492 -3.5942 -0.6415 13 7 6.2667 -4.1575 0.7154 14 6 7.4291 -4.5189 1.2939 15 8 8.4739 -4.3809 0.6937 16 6 7.4304 -5.0957 2.6862 17 6 8.8666 -5.4195 3.1027 18 6 8.8681 -6.0044 4.5164 19 1 8.3557 -5.3339 5.2063 20 6 10.3174 -6.2675 4.9925 21 6 10.1752 -7.6309 5.7208 22 8 9.2118 -8.3453 4.9170 23 6 8.2061 -7.3960 4.5250 24 6 4.9924 -4.3248 1.4273 25 6 4.2570 -2.9760 1.4363 26 1 -0.4850 0.8401 0.0004 27 1 3.8646 -0.3621 -0.0007 28 1 3.5645 -3.2061 -0.5907 29 1 6.0565 -1.5421 -0.0081 30 1 5.3959 -1.8766 -1.6270 31 1 7.2716 -3.4316 -0.9829 32 1 5.7417 -4.2832 -1.3167 33 1 7.0052 -4.3707 3.3802 34 1 6.8335 -6.0076 2.7023 35 1 9.2915 -6.1446 2.4086 36 1 9.4639 -4.5079 3.0865 37 1 10.9969 -6.3491 4.1440 38 1 10.6482 -5.4894 5.6804 39 1 9.7982 -7.4858 6.7331 40 1 11.1277 -8.1606 5.7394 41 1 7.3836 -7.4108 5.2401 42 1 7.8374 -7.6372 3.5280 43 1 4.3844 -5.0721 0.9174 44 1 5.1851 -4.6443 2.4514 45 1 4.8260 -2.2526 2.0204 46 1 3.2690 -3.1040 1.8784 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000990904042.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:40:57 Heat of formation + Delta-G solvation = -82.327580 kcal Electronic energy + Delta-G solvation = -24207.096039 eV Core-core repulsion = 20710.321219 eV Total energy + Delta-G solvation = -3496.774820 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 296.189 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.33000 -39.62505 -37.55588 -34.78723 -34.65261 -32.21050 -31.45144 -30.67876 -29.84700 -28.72783 -25.52260 -24.38412 -23.08860 -22.76804 -21.98196 -20.68688 -20.20933 -18.89541 -17.62313 -17.24821 -16.95611 -16.23254 -15.72324 -15.63138 -15.22567 -14.86585 -14.30830 -14.14814 -13.85807 -13.69334 -13.55308 -13.33577 -13.12823 -12.82420 -12.46922 -12.29521 -12.15934 -11.93002 -11.89308 -11.68992 -11.30307 -11.08981 -11.07469 -11.01787 -10.93032 -10.86708 -10.60660 -10.28965 -9.97798 -9.93580 -9.73386 -9.63799 -8.97918 -8.57471 -7.33704 -5.82538 -3.18554 2.63085 3.02031 3.33683 3.37001 3.41915 3.61093 4.13114 4.24460 4.52369 4.54282 4.59038 4.77112 4.83059 4.89244 4.95108 5.03365 5.06175 5.19337 5.25763 5.27648 5.31036 5.37534 5.38659 5.44313 5.47651 5.54497 5.59253 5.60431 5.69342 5.81349 5.87106 5.89901 6.01198 6.05272 6.12335 6.24044 6.33681 6.50188 6.53125 6.75373 6.88715 7.45048 7.92817 8.18315 8.36532 9.14617 9.87499 10.07196 11.35596 Molecular weight = 296.19amu Principal moments of inertia in cm(-1) A = 0.027567 B = 0.002719 C = 0.002648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.445231 B =10296.741357 C =10570.940843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.749 5.749 10 C 0.183 3.817 11 C -0.142 4.142 12 C 0.116 3.884 13 N -0.608 5.608 14 C 0.513 3.487 15 O -0.551 6.551 16 C -0.143 4.143 17 C -0.093 4.093 18 C -0.125 4.125 19 H 0.085 0.915 20 C -0.151 4.151 21 C 0.045 3.955 22 O -0.380 6.380 23 C 0.048 3.952 24 C 0.106 3.894 25 C -0.151 4.151 26 H 0.260 0.740 27 H 0.361 0.639 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.091 0.909 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.058 0.942 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.552 -13.547 9.618 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.390 5.390 10 C 0.074 3.926 11 C -0.181 4.181 12 C -0.007 4.007 13 N -0.341 5.341 14 C 0.302 3.698 15 O -0.430 6.430 16 C -0.183 4.183 17 C -0.131 4.131 18 C -0.143 4.143 19 H 0.103 0.897 20 C -0.189 4.189 21 C -0.032 4.032 22 O -0.299 6.299 23 C -0.029 4.029 24 C -0.017 4.017 25 C -0.192 4.192 26 H 0.070 0.930 27 H 0.193 0.807 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.109 0.891 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 18.823 -13.744 9.221 25.065 hybrid contribution 0.247 1.627 0.191 1.656 sum 19.070 -12.118 9.412 24.476 Atomic orbital electron populations 1.69700 1.05104 1.25880 1.57364 1.24677 0.95229 0.97239 1.01949 0.86555 0.79167 0.84991 0.77815 1.21063 1.21760 1.20389 1.19059 0.80526 0.94681 1.43206 0.89169 1.42808 1.04026 1.01986 1.90220 1.20139 0.90223 0.89403 0.92872 1.22244 0.97183 0.96548 1.02165 1.21581 1.01894 0.94630 0.82590 1.48220 1.06765 1.62208 1.16941 1.20636 0.83152 0.77776 0.88246 1.90669 1.31292 1.55616 1.65385 1.21769 0.99615 1.02411 0.94479 1.21379 0.95299 1.02042 0.94410 1.22625 0.96290 0.97304 0.98110 0.89654 1.23240 0.96816 0.97730 1.01090 1.23592 0.93186 0.92012 0.94361 1.88878 1.37368 1.33597 1.70035 1.23346 0.91174 0.87618 1.00780 1.21970 0.84055 0.99060 0.96614 1.22716 1.00499 0.94722 1.01292 0.93024 0.80653 0.92493 0.92020 0.90498 0.89349 0.91444 0.88706 0.88920 0.90755 0.90759 0.90114 0.90104 0.92267 0.89057 0.92267 0.89570 0.91177 0.90280 0.92308 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.71 13.97 55.49 0.78 -27.93 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.88 21.76 27.74 -169.99 -4.71 17.04 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.46 6.52 56.52 0.37 -6.09 16 7 C -0.24 -6.64 10.41 -15.06 -0.16 -6.80 16 8 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 9 N -0.75 -16.93 4.92 -53.39 -0.26 -17.20 16 10 C 0.18 3.26 2.73 -67.89 -0.19 3.07 16 11 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 12 C 0.12 1.56 6.43 -3.71 -0.02 1.53 16 13 N -0.61 -7.80 2.97 -172.50 -0.51 -8.31 16 14 C 0.51 6.67 7.70 -10.98 -0.08 6.59 16 15 O -0.55 -8.99 15.40 5.56 0.09 -8.90 16 16 C -0.14 -1.29 3.89 -27.88 -0.11 -1.40 16 17 C -0.09 -0.83 3.70 -26.74 -0.10 -0.93 16 18 C -0.12 -0.90 3.06 -89.10 -0.27 -1.17 16 19 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 20 C -0.15 -1.01 6.73 -24.60 -0.17 -1.17 16 21 C 0.05 0.32 7.72 38.33 0.30 0.61 16 22 O -0.38 -3.78 11.52 -35.23 -0.41 -4.19 16 23 C 0.05 0.38 6.94 37.73 0.26 0.64 16 24 C 0.11 1.23 6.37 -3.49 -0.02 1.21 16 25 C -0.15 -2.32 5.67 -26.38 -0.15 -2.47 16 26 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 27 H 0.36 8.17 5.66 -40.82 -0.23 7.93 16 28 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 29 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.09 1.24 7.01 -51.93 -0.36 0.87 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.09 0.75 7.70 -51.93 -0.40 0.35 16 34 H 0.09 0.68 6.78 -51.93 -0.35 0.33 16 35 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 36 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 37 H 0.08 0.58 7.87 -51.93 -0.41 0.17 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 0.67 6.82 -51.93 -0.35 0.32 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 0.72 5.93 -51.93 -0.31 0.41 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -32.89 357.62 -8.52 -41.41 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -7.92 Total: 5.23 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -0.95 Total: -2.54 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.00 Total: -53.44 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: -0.32 Total: -13.09 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.71 Total: 17.04 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.89 -8.52 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000990904042.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.919 kcal (2) G-P(sol) polarization free energy of solvation -32.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds